Genotype-by-environment interaction in coast redwood outside natural distribution - search for environmental cues
Open Access
- 10 February 2020
- journal article
- research article
- Published by Springer Nature in BMC Genetics
- Vol. 21 (1) , 1-14
Abstract
Background: Effective matching of genotypes and environments is required for the species to reach optimal productivity and act effectively for carbon sequestration. A common garden experiment across five different environments was undertaken to assess genotype x environment interaction (GxE) of coast redwood in order to understand the performance of genotypes across environments. Results: The quantitative genetic analysis discovered no GxE between investigated environments for diameter at breast height (DBH). However, no genetic component was detected at one environment possibly due to stressful conditions. The implementation of universal response function allowed for the identification of important environmental factors affecting species productivity. Additionally, this approach enabled us to predict the performance of species across the New Zealand environmental conditions. Conclusions: In combination with quantitative genetic analysis which identified genetically superior material, the URF model can directly identify the optimal geographical regions to maximize productivity. However, the finding of ideally uncorrelated climatic variables for species with narrow ecological amplitude is rather challenging, which complicates construction of informative URF model. This, along with a small number of tested environments, tended to overfit a prediction model which resulted in extreme predictions in untested environments.Keywords
Funding Information
- Ministry of Primary Industries (404886)
This publication has 56 references indexed in Scilit:
- Animal Models and Integrated Nested Laplace ApproximationsG3: Genes, Genomes, Genetics, 2013
- How to Find an Appropriate Clustering for Mixed-Type Variables with Application to Socio-Economic StratificationJournal of the Royal Statistical Society Series C: Applied Statistics, 2013
- Impacts of climate change on the future of biodiversityEcology Letters, 2012
- Strategies for Reforestation under Uncertain Future Climates: Guidelines for Alberta, CanadaPLOS ONE, 2011
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity SpeciesPLOS ONE, 2011
- Testing for Spatially Divergent Selection: Comparing QST to FSTGenetics, 2009
- Fog interception by Sequoia sempervirens (D. Don) crowns decouples physiology from soil water deficitPlant, Cell & Environment, 2009
- Clones identification of Sequoia sempervirens (D. Don) Endl. in Chile by using PCR-RAPDs techniqueJournal of Zhejiang University-SCIENCE B, 2009
- Adaptation, migration or extirpation: climate change outcomes for tree populationsEvolutionary Applications, 2008
- Fog in the California redwood forest: ecosystem inputs and use by plantsOecologia, 1998