Tomato Phenotypic Diversity Determined by Combined Approaches of Conventional and High-Throughput Tomato Analyzer Phenotyping
Open Access
Abstract
Morphological variation in vegetative and fruit traits is a key determinant in unraveling phenotypic diversity. This study was designed to assess phenotypic diversity in tomatoes and examine intra- and intervarietal groups’ variability using 28 conventional descriptors (CDs) and 47 Tomato Analyzer (TA) descriptors related to plant and fruit morphometry. Comprehensive phenotyping of 150 accessions representing 21 countries discerned noticeable variability for CD vegetative traits and TA quantified fruit features, such as shape, size, and color. Hierarchical cluster analysis divided the accessions into 10 distinct classes based on fruit shape and size. Multivariate analysis was used to assess divergence in variable traits among populations. Eight principal components with an eigenvalue >1 were identified by factor analysis, which contributed 87.5% variation to the total cumulative variance with the first two components contributing 32.0% and 18.1% variance, respectively. The relationship between vegetative and fruit descriptors was explained by respective CD and TA correlation networks. There was a strong positive correlation between fruit shape and size whereas negative correlations were between fruit shape index, internal eccentricity, and proximal end shape. The combined approach of CD and TA phenotyping allowed us to unravel the phenotypic diversity of vegetative and reproductive trait variation evaluated at pre- and post-harvest stages.Keywords
Funding Information
- Horizon 2020 Framework Programme (739582, 677279)
This publication has 40 references indexed in Scilit:
- Where Have All the Crop Phenotypes Gone?PLOS Biology, 2013
- Distribution ofSUN, OVATE, LC, andFASin the Tomato Germplasm and the Relationship to Fruit Shape DiversityPlant Physiology, 2011
- Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breedingBMC Genomics, 2009
- Evaluation of amplified fragment length polymorphism and simple sequence repeats for tomato germplasm fingerprinting: utility for grouping closely related traditional cultivarsGenome, 2006
- Development of a Controlled Vocabulary and Software Application to Analyze Fruit Shape Variation in Tomato and Other Plant SpeciesPlant Physiology, 2006
- Natural genetic variation for improving crop qualityCurrent Opinion in Plant Biology, 2006
- (GATA)4 DNA fingerprinting identifies morphologically characterized ‘San Marzano’ tomato plantsPlant Breeding, 2006
- Unused Natural Variation Can Lift Yield Barriers in Plant BreedingPLOS Biology, 2004
- DNA Fingerprinting and Quality Traits of Corbarino Cherry-like Tomato LandracesJournal of Agricultural and Food Chemistry, 2004
- The Genetic, Developmental, and Molecular Bases of Fruit Size and Shape Variation in TomatoThe Plant Cell, 2004