Lipid level alteration in human and cellular models of alpha synuclein mutations
Open Access
- 25 April 2022
- journal article
- research article
- Published by Springer Nature in npj Parkinson's Disease
- Vol. 8 (1) , 1-10
Abstract
Lipid profiles in biological fluids from patients with Parkinson’s disease (PD) are increasingly investigated in search of biomarkers. However, the lipid profiles in genetic PD remain to be determined, a gap of knowledge of particular interest in PD associated with mutant α-synuclein (SNCA), given the known relationship between this protein and lipids. The objective of this research is to identify serum lipid composition fromSNCAA53T mutation carriers and to compare these alterations to those found in cells and transgenic mice carrying the same genetic mutation. We conducted an unbiased lipidomic analysis of 530 lipid species from 34 lipid classes in serum of 30 participants withSNCAmutation with and without PD and 30 healthy controls. The primary analysis was done between 22 PD patients withSNCA+ (SNCA+/PD+) and 30 controls using machine-learning algorithms and traditional statistics. We also analyzed the lipid composition of human clonal-cell lines and tissue from transgenic mice overexpressing the sameSNCAmutation. We identified specific lipid classes that best discriminate betweenSNCA+/PD+ patients and healthy controls and found certain lipid species, mainly from the glycerophosphatidylcholine and triradylglycerol classes, that are most contributory to this discrimination. Most of these alterations were also present in human derived cells and transgenic mice carrying the same mutation. Our combination of lipidomic and machine learning analyses revealed alterations in glycerophosphatidylcholine and triradylglycerol in sera from PD patients as well as cells and tissues expressing mutant α-Syn. Further investigations are needed to establish the pathogenic significance of these α-Syn-associated lipid changes.Keywords
Funding Information
- Parkinson's Foundation (Stanley Fahn Junior Faculty Award)
- U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (K02NS080915, AG056387)
- U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke
This publication has 65 references indexed in Scilit:
- Genetics of Parkinson's DiseaseCold Spring Harbor Perspectives in Medicine, 2012
- Comparative Lipidomic Analysis of Mouse and Human Brain with Alzheimer DiseaseJournal of Biological Chemistry, 2012
- Impact of omega-3 fatty acids in Parkinson's diseaseAgeing Research Reviews, 2011
- Lipidomics reveals a remarkable diversity of lipids in human plasmaJournal of Lipid Research, 2010
- Variable selection using random forestsPattern Recognition Letters, 2010
- Letter to the Editor: Stability of Random Forest importance measuresBriefings in Bioinformatics, 2010
- α-Synuclein overexpression increases dopamine toxicity in BE(2)-M17 cellsBMC Neuroscience, 2010
- Conditional variable importance for random forestsBMC Bioinformatics, 2008
- Normalization method for metabolomics data using optimal selection of multiple internal standardsBMC Bioinformatics, 2007
- Acquired Obesity Is Associated with Changes in the Serum Lipidomic Profile Independent of Genetic Effects – A Monozygotic Twin StudyPLOS ONE, 2007