Proteogenomic Analysis of Polymorphisms and Gene Annotation Divergences in Prokaryotes using a Clustered Mass Spectrometry-Friendly Database

This publication has 37 references indexed in Scilit:

• Using a Label-free Proteomics Method to Identify Differentially Abundant Proteins in Closely Related Hypo- and Hypervirulent Clinical Mycobacterium tuberculosis Beijing Isolates
  Molecular & Cellular Proteomics, 2010
• MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes
  Bioinformatics, 2010
• A Comprehensive Survey of Single Nucleotide Polymorphisms (SNPs) across Mycobacterium bovis Strains and M. bovis BCG Vaccine Strains Refines the Genealogy and Defines a Minimal Set of SNPs That Separate Virulent M. bovis Strains and M. bovis BCG Strains
  Infection and Immunity, 2009
• Evidence for a rapid rate of molecular evolution at the hypervariable and immunogenic Mycobacterium tuberculosis PPE38 gene region
  BMC Ecology and Evolution, 2009
• MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
  Nature Biotechnology, 2008
• High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example
  BMC Genomics, 2008
• The International Protein Index: An integrated database for proteomics experiments
  Proteomics, 2004
• The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
  Nucleic Acids Research, 2003
• Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
  Nature, 1998
• Basic Local Alignment Search Tool
  Journal of Molecular Biology, 1990