Spatially and cell-type resolved quantitative proteomic atlas of healthy human skin
Authors:
- Beatrice Dyring-AndersenBDBeatrice Dyring-Andersen
- Marianne Bengtson LoevendorfMLMarianne Bengtson Loevendorf
- Fabian CosciaFCFabian Coscia
- Alberto SantosASAlberto Santos
- Ana Rita ColacoACAna Rita Colaco
- Lili NiuLNLili Niu
- Michael BzorekMBMichael Bzorek
- Sophia DollSDSophia Doll
- Joergen Lock AndersenJAJoergen Lock Andersen
- Rachael A. ClarkRCRachael A. Clark
- Lone SkovLSLone Skov
Preprint
Abstract
Human skin provides both physical integrity and immunological protection from the external environment using functionally distinct layers, cell types and extracellular matrix. Despite its central role in human health and disease, the constituent proteins of skin have not been systematically characterized. Here, we combined advanced tissue dissection methods, flow cytometry and state-of-the-art proteomics to describe a spatially-resolved quantitative proteomic atlas of human skin. We quantified 10,701 proteins as a function of their spatial location and cellular origin. The resulting protein atlas and our initial data analyses demonstrate the value of proteomics for understanding cell-type diversity within the skin. We describe the quantitative distribution of structural proteins, known and novel proteins specific to cellular subsets and those with specialized immunological functions such as cytokines and chemokines. We anticipate that this proteomic atlas of human skin will become an essential community resource for basic and translational research ( www.skin.science ).Keywords
All Related Versions
- Published version: Nature Communications, 11 (1), 1.
This publication has 58 references indexed in Scilit:
- The Molecular Anatomy of Mouse Skin during Hair Growth and RestCell Stem Cell, 2020
- Review—Current Concepts in Inflammatory Skin Diseases Evolved by Transcriptome Analysis: In-Depth Analysis of Atopic Dermatitis and PsoriasisInternational Journal of Molecular Sciences, 2020
- Differential proteomic analysis of actinic keratosis, Bowen’s disease and cutaneous squamous cell carcinoma by label-free LC–MS/MSJournal of Dermatological Science, 2018
- The hand eczema proteome: imbalance of epidermal barrier proteinsBritish Journal of Dermatology, 2015
- Expression of Human Skin-Specific Genes Defined by Transcriptomics and Antibody-Based ProfilingJournal of Histochemistry & Cytochemistry, 2014
- A Three-Dimensional Atlas of Human Dermal Leukocytes, Lymphatics, and Blood VesselsJournal of Investigative Dermatology, 2014
- The skin-resident and migratory immune system in steady state and memory: innate lymphocytes, dendritic cells and T cellsNature Immunology, 2013
- Proteomic anatomy of human skinJournal of Proteomics, 2013
- The Vast Majority of CLA+ T Cells Are Resident in Normal SkinThe Journal of Immunology, 2006
- The Skin Immune System (SIS): Distribution and Immunophenotype of Lymphocyte Subpopulations in Normal Human SkinJournal of Investigative Dermatology, 1987