Intrathymic AAV delivery results in therapeutic site-specific integration at TCR loci
Open Access
- 15 February 2023
- journal article
- research article
- Published by American Society of Hematology in Blood
- Vol. 141 (19) , 2316-2329
Abstract
Adeno-associated Viral vectors (AAVs) have been successful exploited in gene therapy applications for the treatment of several genetic disorders. AAV is considered an episomal vector but it has been shown to integrate within the host-cell genome following generation of double-strand DNA breaks or nicks. While AAV integration raises some safety concerns, it can also provide therapeutic benefit; the direct intrathymic injection of an AAV harboring a therapeutic transgene results in integration in T cell progenitors and long-term T cell immunity. To assess the mechanisms of AAV integration, we retrieved and analyzed hundreds of AAV integration sites from lymph node-derived mature T-cells as compared to liver and brain tissue from treated mice. Notably, we found that while AAV integrations in the liver and brain were distributed across the entire mouse genome, >90% of the integrations in T-cells were clustered within the T cell receptor α, β and γ genes. More precisely, the insertion mapped to DNA breaks created by the enzymatic activity of recombination activating genes (RAG) during V(D)J recombination. Our data indicate that RAG activity during T-cell receptor maturation induces a site-specific integration of AAV genomes and opens new therapeutic avenues for achieving long-term AAV-mediated gene transfer in dividing cells.Keywords
This publication has 56 references indexed in Scilit:
- FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing PlatformsBiology, 2012
- Integration Frequency and Intermolecular Recombination of rAAV Vectors in Non-human Primate Skeletal Muscle and LiverMolecular Therapy, 2012
- RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomesNucleic Acids Research, 2010
- Adeno‐associated virus gene repair corrects a mouse model of hereditary tyrosinemia in vivo†‡Hepatology, 2010
- BEDTools: a flexible suite of utilities for comparing genomic featuresBioinformatics, 2010
- Fast and accurate short read alignment with Burrows–Wheeler transformBioinformatics, 2009
- Mechanics of T cell receptor gene rearrangementCurrent Opinion in Immunology, 2009
- Efficient Intrathymic Gene Transfer Following In Situ Administration of a rAAV Serotype 8 Vector in Mice and Nonhuman PrimatesMolecular Therapy, 2009
- DNA Palindromes with a Modest Arm Length of ≳20 Base Pairs Are a Significant Target for Recombinant Adeno-Associated Virus Vector Integration in the Liver, Muscles, and Heart in MiceJournal of Virology, 2007
- MEME: discovering and analyzing DNA and protein sequence motifsNucleic Acids Research, 2006