Eukaryotic Ribosome Biogenesis: The 40S Subunit
Open Access
- 10 May 2022
- journal article
- review article
- Published by Acta Naturae Ltd in Acta Naturae
- Vol. 14 (1) , 14-30
Abstract
The formation of eukaryotic ribosomes is a sequential process of ribosomal precursors maturation in the nucleolus, nucleoplasm, and cytoplasm. Hundreds of ribosomal biogenesis factors ensure the accurate processing and formation of the ribosomal RNAs tertiary structure, and they interact with ribosomal proteins. Most of what we know about the ribosome assembly has been derived from yeast cell studies, and the mechanisms of ribosome biogenesis in eukaryotes are considered quite conservative. Although the main stages of ribosome biogenesis are similar across different groups of eukaryotes, this process in humans is much more complicated owing to the larger size of the ribosomes and pre-ribosomes and the emergence of regulatory pathways that affect their assembly and function. Many of the factors involved in the biogenesis of human ribosomes have been identified using genome-wide screening based on RNA interference. This review addresses the key aspects of yeast and human ribosome biogenesis, using the 40S subunit as an example. The mechanisms underlying these differences are still not well understood, because, unlike yeast, there are no effective methods for characterizing pre-ribosomal complexes in humans. Understanding the mechanisms of human ribosome assembly would have an incidence on a growing number of genetic diseases (ribosomopathies) caused by mutations in the genes encoding ribosomal proteins and ribosome biogenesis factors. In addition, there is evidence that ribosome assembly is regulated by oncogenic signaling pathways, and that defects in the ribosome biogenesis are linked to the activation of tumor suppressors.Keywords
This publication has 140 references indexed in Scilit:
- Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processingBiology Direct, 2013
- Invasive cells in animals and plants: searching for LECA machineries in later eukaryotic lifeBiology Direct, 2013
- Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunitsNature Structural & Molecular Biology, 2012
- RNA unwinding by the Trf4/Air2/Mtr4 polyadenylation (TRAMP) complexProceedings of the National Academy of Sciences, 2012
- The power of AAA-ATPases on the road of pre-60S ribosome maturation — Molecular machines that strip pre-ribosomal particlesBiochimica et Biophysica Acta (BBA) - Molecular Cell Research, 2012
- A cluster of ribosome synthesis factors regulate pre‐rRNA folding and 5.8S rRNA maturation by the Rat1 exonucleaseThe EMBO Journal, 2011
- Yeast Pre-rRNA Processing and Modification Occur CotranscriptionallyMolecular Cell, 2010
- Structure and function of the 5′→3′ exoribonuclease Rat1 and its activating partner Rai1Nature, 2009
- The PINc domain protein Utp24, a putative nuclease, is required for the early cleavage steps in 18S rRNA maturationProceedings of the National Academy of Sciences, 2006
- Nucleolar proteome dynamicsNature, 2005