Improving 3-D Zebrafish Tracking With Multiview Data Fusion and Global Association
- 27 June 2023
- journal article
- research article
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Sensors Journal
- Vol. 23 (15) , 17245-17259
Abstract
Zebrafish behavioral patterns reveal valuable insights for biomedical research. To accurately identify these patterns, visual tracking systems need to reconstruct 3D trajectories from multi-view video sequences. However, 3D zebrafish tracking faces challenges such as the dynamics in movements, the similarity in appearances, and the distortion caused by different viewpoints. In this paper, we propose a new method for robust 3D zebrafish trajectory reconstruction based on multi-view data fusion and global association. Our method generates reliable segments of 2D/3D trajectories, called tracklets , where we considering short-term cues of appearance similarity and motion consistency and proposing corresponding scoring metrics. Moreover, we use a lazy-reconstruction strategy to enhance the overall accuracy of 3D trajectories by taking into account the global context. Extensive experiments on the public 3D-ZeF20 dataset demonstrate the effectiveness of the proposed method, achieving 67.9% MOTA, 64.3% IDF1, and 55.0 MTBFm.Keywords
Funding Information
- National Key Research and Development Program of China (2022YFB3306500)
- National Natural Science Foundation of China (61872025)
- Department of Faculty of Applied Sciences, Macao Polytechnic University, Macau, China (RP/ESCA-03/2020)
- HAWKEYE Group
This publication has 57 references indexed in Scilit:
- Assessing tracking performance in complex scenarios using mean time between failures2016
- Multiple Hypothesis Tracking Revisited2015
- A novel 3D method of locomotor analysis in adult zebrafish: Implications for automated detection of CNS drug-evoked phenotypesJournal of Neuroscience Methods, 2015
- FaceNet: A unified embedding for face recognition and clustering2015
- Rapid reverse genetic screening using CRISPR in zebrafishNature Methods, 2015
- Automatically Detect and Track Multiple Fish Swimming in Shallow Water with Frequent OcclusionPLOS ONE, 2014
- idTracker: tracking individuals in a group by automatic identification of unmarked animalsNature Methods, 2014
- Automated quantification of Zebrafish tail deformation for high-throughput drug screening2013
- Evaluating Multiple Object Tracking Performance: The CLEAR MOT MetricsEURASIP Journal on Image and Video Processing, 2008
- Individual behavior and emergent properties of fish schools: a comparison of observation and theoryMarine Ecology Progress Series, 2004