Computational Approaches for RNA Structure Ensemble Deconvolution from Structure Probing Data
Open Access
- 17 May 2022
- journal article
- review article
- Published by Elsevier in Journal of Molecular Biology
- Vol. 434 (18) , 167635
Abstract
No abstract availableKeywords
Funding Information
- Rijksuniversiteit Groningen
- Nederlandse Organisatie voor Wetenschappelijk Onderzoek (OCENW.XS22.1.015)
This publication has 107 references indexed in Scilit:
- Evaluating the accuracy of SHAPE-directed RNA secondary structure predictionsNucleic Acids Research, 2013
- Sensitive measurement of single-nucleotide polymorphism-induced changes of RNA conformation: application to disease studiesNucleic Acids Research, 2012
- RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure predictionNucleic Acids Research, 2012
- Modeling and automation of sequencing-based characterization of RNA structureProceedings of the National Academy of Sciences, 2011
- Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)Proceedings of the National Academy of Sciences, 2011
- A stress-responsive RNA switch regulates VEGFA expressionNature, 2009
- Accurate SHAPE-directed RNA structure determinationProceedings of the National Academy of Sciences, 2009
- OligoWalk: an online siRNA design tool utilizing hybridization thermodynamicsNucleic Acids Research, 2008
- Using RNA secondary structures to guide sequence motif finding towards single-stranded regionsNucleic Acids Research, 2006
- The equilibrium partition function and base pair binding probabilities for RNA secondary structureBiopolymers, 1990