Chryseobacterium arachidiradicis sp. nov., isolated from the geocarposphere (soil around the peanut) of very immature peanuts (Arachis hypogaea)
Authors:
- 1 July 2015
- journal article
- Published by Microbiology Society in International Journal of Systematic and Evolutionary Microbiology
- Vol. 65 (Pt_7) , 2179-2186
Abstract
A yellow-pigmented bacterial strain, 91A-612T, isolated from the geocarposphere (soil around the peanut) of very immature peanuts (Arachis hypogaea) in Alabama, USA, was studied for its taxonomic position. Cells of the isolate were rod-shaped and stained Gram-negative. A comparison of the 16S rRNA gene sequence with the sequences of the type strains of the most closely related species showed that the strain belongs to the genus Chryseobacterium, showing the highest sequence similarities to the type strains of Chryseobacterium molle (98.4 %), C. pallidum (98.3 %) and C. hominis (97.8 %). The 16S rRNA gene sequence similarities to the type strains of all other species of the genus Chryseobacterium were below 97.0 %. The fatty acid profile of strain 91A-612T consisted of the major fatty acids iso-C15 : 0, summed feature 3 (iso-C15 : 0 2-OH/C16 : 1ω7c) and iso-C17 : 0 3-OH. Major compounds in the polar lipid profile were phosphatidylethanolamine and several unidentified lipids, including two lipids that did not contain a sugar moiety, an amino group or a phosphate group (L3, L8), and an aminolipid (AL1). The quinone system was composed mainly of MK-6. The polyamine pattern contained sym-homospermidine as the major compound and moderate amounts of spermidine and spermine. DNA–DNA hybridizations between strain 91A-612T and the type strains of C. molle, C. pallidum and C. hominis resulted in relatedness values well below 70 %. These data and the differentiating biochemical and chemotaxonomic properties showed that isolate 91A-612T represents a novel species of the genus Chryseobacterium, for which we propose the name Chryseobacterium arachidiradicis sp. nov. (type strain 91A-612T = LMG 27814T = CCM 8490T = CIP 110647T).Keywords
This publication has 60 references indexed in Scilit:
- SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genesBioinformatics, 2012
- Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured speciesInternational Journal of Systematic and Evolutionary Microbiology, 2012
- Chryseobacterium culicis sp. nov., isolated from the midgut of the mosquito Culex quinquefasciatusInternational Journal of Systematic and Evolutionary Microbiology, 2010
- Description of Chryseobacterium anthropi sp. nov. to accommodate clinical isolates biochemically similar to Kaistella koreensis and Chryseobacterium haifense, proposal to reclassify Kaistella koreensis as Chryseobacterium koreense comb. nov. and emended description of the genus ChryseobacteriumInternational Journal of Systematic and Evolutionary Microbiology, 2009
- Chryseobacterium luteum sp. nov., associated with the phyllosphere of grassesInternational Journal of Systematic and Evolutionary Microbiology, 2007
- Pseudomonas knackmussii sp. nov.International Journal of Systematic and Evolutionary Microbiology, 2007
- RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsBioinformatics, 2006
- Chryseobacterium joostei sp. nov., isolated from the dairy environmentInternational Journal of Systematic and Evolutionary Microbiology, 2003
- Chryseobacterium defluvii sp. nov., isolated from wastewaterInternational Journal of Systematic and Evolutionary Microbiology, 2003
- Evaluation of the Titertek-Enterobac-Automated System (TTE-AS) for Identification of Members of the Family EnterobacteriaceaeZentralblatt für Bakteriologie, 1990