Coraliomargarita algicola sp. nov., isolated from a marine green alga
Open Access
- 8 May 2024
- journal article
- research article
- Published by Microbiology Society in International Journal of Systematic and Evolutionary Microbiology
- Vol. 74 (5) , 006367
Abstract
A Gram-stain-negative, facultative aerobic, catalase- and oxidase-positive, non-motile, non-flagellated, and coccus-shaped bacterium, strain J2-16T, isolated from a marine green alga, was characterized taxonomically. Strain J2-16T grew at 20–40 °C (optimum, 30 °C), pH 6.0–10.0 (optimum, pH 7.0), and 1.0–4.0 % (w/v) NaCl (optimum, 3.0 %). Menaquinone-7 was identified as the sole respiratory quinone, and major fatty acids (>5 %) were C18 : 1 ω9c, iso-C14 : 0, C14 : 0, anteiso-C15 : 0, C18 : 0, C16 : 0, and C17 : 1 ω8c. The polar lipids of strain J2-16T consisted of phosphatidylglycerol, phosphatidylethanolamine, two unidentified phospholipids, and three unidentified lipids. The genome size of strain J2-16T was 5384 kb with a G+C content of 52.0 mol%. Phylogenetic analyses based on 16S rRNA gene and 120 protein marker sequences revealed that strain J2-16T formed a distinct phyletic lineage within the genus Coraliomargarita, closely related to Coraliomargarita sinensis WN38T and Coraliomargarita akajimensis DSM 45221T with 16S rRNA gene sequence similarities of 95.7 and 94.4 %, respectively. Average nucleotide identity and digital DNA–DNA hybridization values between strain J2-16T and Coraliomargarita species were lower than 71.2 and 20.0 %, respectively. The phenotypic, chemotaxonomic, and molecular features support that strain J2-16T represents a novel species of the genus Coraliomargarita, for which the name Coraliomargarita algicola sp. nov. is proposed. The type strain is J2-16T (=KACC 22590T=JCM 35407T).Keywords
Funding Information
- National Institute of Biological Resources (NIBR No. 2023-02-001)
This publication has 26 references indexed in Scilit:
- CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learningNature Methods, 2023
- dbCAN3: automated carbohydrate-active enzyme and substrate annotationNucleic Acids Research, 2023
- MEGA11: Molecular Evolutionary Genetics Analysis Version 11Molecular Biology and Evolution, 2021
- GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy DatabaseBioinformatics, 2019
- Ubiquitous marine bacterium inhibits diatom cell divisionThe ISME Journal, 2016
- NCBI prokaryotic genome annotation pipelineNucleic Acids Research, 2016
- Infernal 1.1: 100-fold faster RNA homology searchesBioinformatics, 2013
- An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipidsJournal of Microbiological Methods, 1984
- Polar Lipid Composition in the Classification of Nocardia and Related BacteriaInternational Journal of Systematic and Evolutionary Microbiology, 1977
- [16] Preparation of buffers for use in enzyme studies1955