Stress changes the material state of a bacterial biomolecular condensate and shifts its function from mRNA decay to storage
Open Access
- 14 November 2025
- journal article
- research article
- Published by Springer Nature in Nature Communications
- Vol. 16 (1) , 10019
Abstract
Bacterial ribonucleoprotein bodies (BR-bodies) are dynamic biomolecular condensates that play a pivotal role in RNA metabolism. We investigated how BR-bodies significantly influence mRNA fate by transitioning between liquid- and solid-like states in response to stress. With a combination of single-molecule and bulk fluorescence microscopy, biochemical assays, and quantitative analyses, we determine that BR-bodies promote efficient mRNA decay in a liquid-like condensate during exponential growth. On the other hand, BR-bodies are repurposed from sites of mRNA decay to reservoirs for mRNA storage under stress; a functional change that is enabled by their transition to a more rigid state, marked by reduced internal dynamics, increased molecular density, and prolonged residence time of Ribonuclease E. Furthermore, we manipulated ATP levels and translation rates, and we conclude that the accumulation of ribosome-depleted mRNA is a key factor driving BR-body rigification, and that condensate maturation further contributes to this process. Upon nutrient replenishment, stationary-phase BR-bodies disassemble, releasing stored mRNAs for rapid translation, demonstrating that BR-body function is governed by a reversible mechanism for resource management. These findings reveal adaptive strategies by which bacteria regulate RNA metabolism through condensate-mediated control of mRNA decay and storage.Keywords
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Funding Information
- U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (R01GM143182, R01GM144731, T32GM142519-03, R35GM124733)
This publication has 105 references indexed in Scilit:
- The emergence of phase separation as an organizing principle in bacteriaBiophysical Journal, 2021
- SMALL-LABS: Measuring Single-Molecule Intensity and Position in Obscuring BackgroundsBiophysical Journal, 2019
- A simple method to estimate the average localization precision of a single-molecule localization microscopy experimentHistochemistry and Cell Biology, 2014
- The Bacterial Cytoplasm Has Glass-like Properties and Is Fluidized by Metabolic ActivityCell, 2014
- Altered Ribostasis: RNA-Protein Granules in Degenerative DisordersCell, 2013
- The social fabric of the RNA degradosomeBiochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 2013
- Selective Ribosome Profiling Reveals the Cotranslational Chaperone Action of Trigger Factor In VivoCell, 2011
- Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAsMolecular Genetics and Genomics, 2003
- A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNAJournal of Molecular Biology, 1979
- A theoretical study on the amount of ATP required for synthesis of microbial cell materialAntonie van Leeuwenhoek, 1973