Proton-Shuffle Mechanism of O−O Activation for Formation of a High-Valent Oxo−Iron Species of Bleomycin
Authors:
- 18 November 2006
- journal article
- Published by American Chemical Society (ACS) in Journal of the American Chemical Society
- Vol. 128 (50) , 16148-16158
Abstract
Bleomycins (BLMs) can utilize H2O2 to cleave DNA in the presence of ferric ions. DFT calculations were used to study the mechanism of O−O bond cleavage in the low-spin FeIII−hydroperoxo complex of BLM. The following alternative hypotheses were investigated using realistic structural models: (a) heterolytic cleavage of the O−O bond, generating a Compound I (Cpd I) like intermediate, formally BLM−FeVO; (b) homolytic O−O cleavage, leading to a BLM−FeIVO species and an OH• radical; and (c) a direct O−O cleavage/H-abstraction mechanism by ABLM. The calculations showed that (a) is a facile and viable mechanism; it involves acid−base proton reshuffle mediated by the side-chain linkers of BLM, causing thereby heterolytic cleavage of the O−O bond and generation of Cpd I. Formation of Cpd I is found to involve a barrier of 13.3 kcal/mol, which is lower than the barriers in the alternative mechanisms (b and c) that possess respective barriers of 31 and 17 kcal/mol. The so-formed Cpd I species with a radical on the side-chain linker, methylvalerate (V), adjacent to the BLM−FeIVO complex, resembles the formation of the active species of cytochrome c peroxidase in the Poulos−Kraut proton-shuffle mechanism in heme peroxidases (Poulos, T. L.; Kraut, J. J. Biol. Chem.1980, 255, 8199−8205). Experimental data are discussed and shown to be in accord with this proposal. It suggests that the high-valence Cpd I species of BLM participates in the DNA cleavage. This is an alternative mechanistic hypothesis to the exclusive reactivity scenario based on ABLM (FeIII−OOH).Keywords
This publication has 44 references indexed in Scilit:
- The Poulos−Kraut Mechanism of Compound I Formation in Horseradish Peroxidase: A QM/MM StudyThe Journal of Physical Chemistry B, 2006
- The mechanism of Compound I formation revisitedJournal of Inorganic Biochemistry, 2005
- The metal bonding domain of the antitumor drug Fe(II)-bleomycin: a DFT investigationJBIC Journal of Biological Inorganic Chemistry, 2004
- One oxidant, many pathways: a theoretical perspective of monooxygenation mechanisms by cytochrome P450 enzymesJBIC Journal of Biological Inorganic Chemistry, 2004
- Bleomycins: new methods will allow reinvestigation of old issuesCurrent Opinion in Chemical Biology, 2004
- DFT Analysis of Fe(H2O)63+ and Fe(H2O)62+ Structure and Vibrations; Implications for Isotope FractionationThe Journal of Physical Chemistry A, 2004
- Does the Hydroperoxo Species of Cytochrome P450 Participate in Olefin Epoxidation with the Main Oxidant, Compound I? Criticism from Density Functional Theory CalculationsBulletin of the Chemical Society of Japan, 2003
- Electronic Structure of Activated Bleomycin: Oxygen Intermediates in Heme versus Non-Heme IronJournal of the American Chemical Society, 2000
- Density-functional thermochemistry. I. The effect of the exchange-only gradient correctionThe Journal of Chemical Physics, 1992
- Ferric bleomycin catalyzed reduction of 10-hydroperoxy-8,12-octadecadienoic acid: evidence for homolytic oxygen-oxygen bond scissionBiochemistry, 1988