Production and diversity of microorganisms associated with sinking particles in the subtropical North Pacific Ocean
Open Access
- 2 July 2021
- journal article
- research article
- Published by Wiley in Limnology and Oceanography
- Vol. 66 (9) , 3255-3270
Abstract
Sinking particulate organic matter controls the flux of carbon (C) from the surface ocean to the deep sea. Microorganisms actively colonize particles, but the extent to which microbial metabolism influences particle export remains uncertain. We conducted experiments to quantify rates of bacterial production (derived based on 3H‐leucine incorporation) and dark C‐fixation (based on 14C‐bicarbonate assimilation) associated with sinking particles collected from the base of the euphotic zone (175 m) in the subtropical North Pacific Ocean. Seawater was amended with sinking particles and rates of filter size‐fractionated (0.2, 2, and 20 μm) bacterial production and dark C‐fixation were measured. Sequencing of 16S ribosomal RNA (rRNA) gene amplicons revealed that microorganisms in the particle‐amended treatments differed from those in the unamended seawater controls, with the particle treatments enriched in putative copiotrophic bacteria. The addition of sinking particles increased rates of bacterial production (by 6‐ to 9‐fold), and to a lesser extent dark C‐fixation (by 1.7‐ to 4.6‐fold), relative to unamended controls, with most of the production associated with filter pore sizes < 20 μm. Normalizing production to concentrations of particulate C yielded rates that were statistically indistinguishable between particle‐amended treatments and unamended controls. We then examined possible relationships between sinking particulate C flux attenuation and its supply to the mesopelagic waters, revealing that flux attenuation was positively related to increases in particulate C supply. Together with results from our experiments, we suggest processes that contribute to sinking particle disaggregation both increase flux attenuation and favor microbial mineralization of particle‐derived organic matter.Keywords
Funding Information
- Simons Foundation (awards # 329108, 721252, 721221)
This publication has 81 references indexed in Scilit:
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census DataPLOS ONE, 2013
- The SILVA ribosomal RNA gene database project: improved data processing and web-based toolsNucleic Acids Research, 2012
- Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotrophScientific Reports, 2012
- Predictable and efficient carbon sequestration in the North Pacific Ocean supported by symbiotic nitrogen fixationProceedings of the National Academy of Sciences, 2012
- The role of terrestrially derived organic carbon in the coastal ocean: A changing paradigm and the priming effectProceedings of the National Academy of Sciences, 2011
- The dynamic ocean biological pump: Insights from a global compilation of particulate organic carbon, CaCO3, and opal concentration profiles from the mesopelagicGlobal Biogeochemical Cycles, 2011
- phangorn: phylogenetic analysis in RBioinformatics, 2010
- In situ measurement of mesopelagic particle sinking rates and the control of carbon transfer to the ocean interior during the Vertical Flux in the Global Ocean (VERTIGO) voyages in the North PacificDeep Sea Research Part II: Topical Studies in Oceanography, 2008
- UniFrac: a New Phylogenetic Method for Comparing Microbial CommunitiesApplied and Environmental Microbiology, 2005
- Seasonal and interannual variability in primary production and particle flux at Station ALOHADeep Sea Research Part II: Topical Studies in Oceanography, 1996