Comprehensive Genomic Dataset of Chinese Lizardtail Herb and Comparative Genomic Analysis Provide Insights Into Its Paleo‐Polyploidization Event
Open Access
- 30 March 2025
- journal article
- Published by Wiley in Ecology and Evolution
- Vol. 15 (4) , e70425
Abstract
The Chinese lizardtail herb, Saururus chinensis, holds a prominent position in traditional Chinese medicine. In this study, we present a comprehensive genomic dataset for S. chinensis. Furthermore, comparative genomic analysis indicates that the extant genome of S. chinensis retains extensive traces of a paleo‐tetraploidization event. These traces are observable at both the macroscopic level of chromosomes and the microscopic level within specific gene families, such as the PEL (pseudo‐etiolation in light) gene family. Additionally, our findings further suggest that this paleo‐tetraploidization event drives an expansion of the PEL gene family in the S. chinensis genome, potentially facilitating its neo‐ and sub‐functionalization, and thereby contributing to the evolutionary adaptability of this species.Keywords
Funding Information
- Natural Science Foundation of Jiangsu Province (BK20180332)
- National Natural Science Foundation of China (32000400)
This publication has 45 references indexed in Scilit:
- Developmental Genetics of the Perianthless Flowers and Bracts of a Paleoherb Species, Saururus chinensisPLOS ONE, 2013
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearityNucleic Acids Research, 2012
- Ancestral polyploidy in seed plants and angiospermsNature, 2011
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mersBioinformatics, 2011
- BLAST+: architecture and applicationsBMC Bioinformatics, 2009
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analysesBioinformatics, 2009
- Using native and syntenically mapped cDNA alignments to improve de novo gene findingBioinformatics, 2008
- Automated generation of heuristics for biological sequence comparisonBMC Bioinformatics, 2005
- MUSCLE: multiple sequence alignment with high accuracy and high throughputNucleic Acids Research, 2004
- Improving the Arabidopsis genome annotation using maximal transcript alignment assembliesNucleic Acids Research, 2003