RVE1, DBB1b, and COL2 Transcription Factors Are Responsive to Combined Stress by UV-B Radiation and Cold in Bell Pepper (Capsicum annuum)
Authors:
- Brandon Estefano Morales-MeridaBrandon Estefano Morales-Merida
- Jesús Christian Grimaldi-OlivasJesús Christian Grimaldi-Olivas
- Abraham Cruz-MendívilAbraham Cruz-Mendívil
- Claudia VillicañaClaudia Villicaña
- José Benigno Valdez-TorresJosé Benigno Valdez-Torres
- José Basilio HerediaJosé Basilio Heredia
- Rubén León-ChanRubén León-Chan
- Luis Alberto Lightbourn-RojasLuis Alberto Lightbourn-Rojas
- Josefina León-FélixJosefina León-Félix
Open Access
- 14 June 2023
- journal article
- research article
- Published by MDPI AG in Horticulturae
- Vol. 9 (6) , 699
Abstract
Ultraviolet-B radiation (UV-B) and cold limit the growth and development of plants, which generates changes in gene expression. This allows plants to respond to stress through regulatory proteins, such as transcription factors, that activate or repress the expression of stress-response genes. RNA-Seq data and WGCNA analyses were utilized to identify the hub genes. Our study found a total of 25, 24, and 29 transcription factors at different time points T1, T2, and T3, respectively, under combined stress (ultraviolet-B radiation and cold). RVE1 (MYB-related), COL2 (CO-like), and DBB1b (DBB) were identified as candidate hub genes. Moreover, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment showed that RVE1, DBB1b, and COL2 were mostly involved in energy production, the antioxidant system (enzymatic and non-enzymatic), signaling through abscisic acid and CA2+, response to light stimulus, and cellular homeostasis. These findings provide the basis for further investigation related to UV-B radiation and cold stress response mechanisms in plants.Keywords
Funding Information
- FOSEC SEP-INVESTIGACION BASICA (2017–2018 A1-S-8466, 784, 589683)
- Cátedras CONACYT (2017–2018 A1-S-8466, 784, 589683)
- Lightbourn Research (2017–2018 A1-S-8466, 784, 589683)
This publication has 98 references indexed in Scilit:
- Cold Signaling and Cold Response in PlantsInternational Journal of Molecular Sciences, 2013
- Mapping quantitative trait loci for freezing tolerance in a recombinant inbred line population of Arabidopsis thaliana accessions Tenela and C24 reveals REVEILLE1 as negative regulator of cold acclimationPlant, Cell & Environment, 2012
- TheArabidopsisB-Box Zinc Finger FamilyThe Plant Cell, 2009
- REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathwaysProceedings of the National Academy of Sciences, 2009
- WGCNA: an R package for weighted correlation network analysisBMC Bioinformatics, 2008
- A Global Survey of Gene Regulation during Cold Acclimation in Arabidopsis thalianaPLOS Genetics, 2005
- Photoreceptor Regulation of CONSTANS Protein in Photoperiodic FloweringScience, 2004
- Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction NetworksGenome Research, 2003
- LHY and CCA1 Are Partially Redundant Genes Required to Maintain Circadian Rhythms in ArabidopsisDevelopmental Cell, 2002
- Oxidative stress during phosphate deficiency in roots of bean plants (Phaseolus vulgaris L.)Journal of Plant Physiology, 2001