Data publication with the structural biology data grid supports live analysis
Open Access
- 7 March 2016
- journal article
- research article
- Published by Springer Nature in Nature Communications
- Vol. 7 (1) , 10882
Abstract
Access to experimental X-ray diffraction image data is fundamental for validation and reproduction of macromolecular models and indispensable for development of structural biology processing methods. Here, we established a diffraction data publication and dissemination system, Structural Biology Data Grid (SBDG; data.sbgrid.org), to preserve primary experimental data sets that support scientific publications. Data sets are accessible to researchers through a community driven data grid, which facilitates global data access. Our analysis of a pilot collection of crystallographic data sets demonstrates that the information archived by SBDG is sufficient to reprocess data to statistics that meet or exceed the quality of the original published structures. SBDG has extended its services to the entire community and is used to develop support for other types of biomedical data sets. It is anticipated that access to the experimental data sets will enhance the paradigm shift in the community towards a much more dynamic body of continuously improving data analysis.Keywords
This publication has 62 references indexed in Scilit:
- Three-dimensional electron crystallography of protein microcrystalseLife, 2013
- Experiences with archived raw diffraction images data: capturing cisplatin after chemical conversion of carboplatin in high salt conditions for a protein crystalJournal of Synchrotron Radiation, 2013
- How good are my data and what is the resolution?Acta Crystallographica Section D Structural Biology, 2013
- iMOSFLM: a new graphical interface for diffraction-image processing withMOSFLMActa Crystallographica Section D Structural Biology, 2011
- Overview of theCCP4 suite and current developmentsActa Crystallographica Section D Structural Biology, 2011
- Crystal structure of the conserved herpesvirus fusion regulator complex gH–gLNature Structural & Molecular Biology, 2010
- XDSActa Crystallographica Section D Structural Biology, 2010
- PDB_REDO: automated re-refinement of X-ray structure models in the PDBJournal of Applied Crystallography, 2009
- Crystallographic evidence for deviating C3b structureNature, 2007
- Scaling and assessment of data qualityActa Crystallographica Section D Structural Biology, 2005