Deciphering the Role of Trehalose in Chroococcidiopsis sp. 029’s High-Desiccation Resistance: Sequence Determination, Structural Modelling and Simulative Analysis of the 30S Ribosomal Subunit
Open Access
Abstract
Desert strains of the genus Chroococcidiopsis are among the most desiccation-resistant cyanobacteria capable of anhydrobiosis. The accumulation of two sugars, sucrose and trehalose, facilitates the entrance of anhydrobiotes into a reversible state of dormancy by stabilizing cellular components upon water removal. This study aimed to evaluate, at the atomistic level, the role of trehalose in desiccation resistance by using as a model system the 30S ribosomal subunit of the desert cyanobacterium Chroococcidiopsis sp. 029. Molecular dynamic simulations provided atomistic evidence regarding its protective role on the 30S molecular structure. Trehalose forms an enveloping shell around the ribosomal subunit and stabilizes the structures through a network of direct interactions. The simulation confirmed that trehalose actively interacts with the 30S ribosomal subunit and that, by replacing water molecules, it ensures ribosomal structural integrity during desiccation, thus enabling protein synthesis to be carried out upon rehydration.Keywords
Funding Information
- the EU National Recovery and Resilience Plan
This publication has 37 references indexed in Scilit:
- Protein Structure Modeling with MODELLER2017
- Avoidance of protein oxidation correlates with the desiccation and radiation resistance of hot and cold desert strains of the cyanobacterium ChroococcidiopsisExtremophiles, 2017
- Adaption of Microbial Life to Environmental Extremes2017
- PACKMOL: A package for building initial configurations for molecular dynamics simulationsJournal of Computational Chemistry, 2009
- Subcellular integrities in Chroococcidiopsis sp. CCMEE 029 survivors after prolonged desiccation revealed by molecular probes and genome stability assaysExtremophiles, 2008
- GLYCAM06: A generalizable biomolecular force field. CarbohydratesJournal of Computational Chemistry, 2007
- The Amber biomolecular simulation programsJournal of Computational Chemistry, 2005
- UCSF Chimera—A visualization system for exploratory research and analysisJournal of Computational Chemistry, 2004
- Trehalose–protein interaction in aqueous solutionProteins: Structure, Function, and Bioinformatics, 2004
- Essential dynamics of proteinsProteins: Structure, Function, and Bioinformatics, 1993