Extinction of metastable stochastic populations
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- 9 February 2010
- journal article
- research article
- Published by American Physical Society (APS) in Physical Review E
- Vol. 81 (2) , 021116
Abstract
We investigate the phenomenon of extinction of a long-lived self-regulating stochastic population, caused by intrinsic (demographic) noise. Extinction typically occurs via one of two scenarios depending on whether the absorbing state n=0 is a repelling (scenario A) or attracting (scenario B) point of the deterministic rate equation. In scenario A the metastable stochastic population resides in the vicinity of an attracting fixed point next to the repelling point n=0. In scenario B there is an intermediate repelling point n=n1 between the attracting point n=0 and another attracting point n=n2 in the vicinity of which the metastable population resides. The crux of the theory is a dissipative variant of WKB (Wentzel-Kramers-Brillouin) approximation which assumes that the typical population size in the metastable state is large. Starting from the master equation, we calculate the quasistationary probability distribution of the population sizes and the (exponentially long) mean time to extinction for each of the two scenarios. When necessary, the WKB approximation is complemented (i) by a recursive solution of the quasistationary master equation at small n and (ii) by the van Kampen system-size expansion, valid near the fixed points of the deterministic rate equation. The theory yields both entropic barriers to extinction and pre-exponential factors, and holds for a general set of multistep processes when detailed balance is broken. The results simplify considerably for single-step processes and near the characteristic bifurcations of scenarios A and B.Keywords
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This publication has 25 references indexed in Scilit:
- Noise Enhanced Persistence in a Biochemical Regulatory Network with Feedback ControlPhysical Review Letters, 2008
- Spectral Theory of Metastability and Extinction in Birth-Death SystemsPhysical Review Letters, 2006
- Spectral formulation and WKB approximation for rare-event statistics in reaction systemsPhysical Review E, 2006
- Deviant effects in molecular reaction pathwaysNature Biotechnology, 2006
- Classification of phase transitions in reaction-diffusion modelsPhysical Review E, 2006
- Rare event statistics in reaction-diffusion systemsPhysical Review E, 2004
- Stochastic Epidemic Models and Their Statistical Analysis2000
- Large fluctuations and optimal paths in chemical kineticsThe Journal of Chemical Physics, 1994
- Stochastic Processes in Physics and ChemistryPhysics Today, 1983
- Fluctuation and relaxation of macrovariablesJournal of Statistical Physics, 1973