Predicting stable cage structures by enumerating stoichiometry and topology
Preprint
- 23 October 2025
- preprint
- Published by American Chemical Society (ACS) in ChemRxiv
Abstract
Current methods for predicting molecular porous materials typically exploit prior knowledge of similar systems, which biases the final outcome to a limited exploration space. To design novel structures and materials, the community must be able to evaluate and model all candidates without any bias. In this paper, we introduce blind structure prediction workflows into our software cgx, taking advantage of (but not limited to) low-cost models. We developed exploration algorithms that learn on-the-fly to not naively evaluate every structure and avoid wasted computational cost. With a direct comparison to experiments, we show that our approach predicts existing cage structures starting only from the experimental inputs (building blocks and their stoichiometry). We demonstrate how using this method prior to any costly experimental commitment would be useful, providing an efficient automated approach that is open source and applicable to any model resolution.Keywords
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Funding Information
- European Research Council (818776)
This publication has 53 references indexed in Scilit:
- Length Ratio‐Driven Configurational Modulation of Heteroleptic Pd 6 L 6 L’ 6 CagesAngewandte Chemie International Edition, 2025
- Development of an Automated Workflow for Screening the Assembly and Host–Guest Behavior of Metal‐Organic Cages Towards Accelerated DiscoveryAngewandte Chemie International Edition, 2025
- A Combined Experimental and Computational Exploration of Heteroleptic cis ‐Pd 2 L 2 L’ 2 Coordination Cages through Geometric ComplementarityChemistry – A European Journal, 2024
- Ring‐Size Control and Guest‐Induced Circularly Polarized Luminescence in Heteroleptic Pd3A3B3 and Pd4A4B4 AssembliesAngewandte Chemie International Edition, 2024
- Diastereoselective Self‐Assembly of Low‐Symmetry PdnL2n Nanocages through Coordination‐Sphere Engineering**Angewandte Chemie, 2023
- Tetramine Aspect Ratio and Flexibility Determine Framework Symmetry for Zn8L6Self‐Assembled StructuresAngewandte Chemie International Edition, 2023
- Martini 3 Coarse‐Grained Force Field: Small MoleculesAdvanced Theory and Simulations, 2021
- High‐Throughput Computational Evaluation of Low Symmetry Pd2L4Cages to Aid in System Design**Angewandte Chemie International Edition, 2021
- Supramolecular Coordination Complexes as Optical BiosensorsChempluschem, 2021
- Metal–Organic Hendecahedra Assembled from Dinuclear Paddlewheel Nodes and Mixtures of Ditopic Linkers with 120 and 90° Bend AnglesAngewandte Chemie International Edition, 2009