Jörg Matysik

The photoreceptor phytochrome switches photochromically between two thermally stable states called Pr and Pfr. Here, we summarize recent solid‐state magic‐angle spinning (MAS) NMR work on this conversion process and interpret the functional mechanism in terms of a nano‐machine. The process is initiated by a double‐bond photoisomerization of the open‐chain tetrapyrrole chromophore at the methine bridge connecting pyrrole rings C and D. The Pr‐state chromophore and its surrounding pocket in canonical cyanobacterial and plant phytochromes has significantly less order, tends to form isoforms and is soft. Conversely, Pfr shows significantly harder chromophore–protein interactions, a well‐defined protonic and charge distribution with a clear classical counterion for the positively charged tetrapyrrole system. The soft‐to‐hard/disorder‐to‐order transition involves the chromophore and its protein surroundings within a sphere of at least 5.5 Å. The relevance of this collective event for signaling is discussed. Measurement of the intermediates during the Pfr → Pr back‐reaction provides insight into the well‐adjusted mechanics of a two‐step transformation. As both Pr → Pfr and Pfr → Pr reaction pathways are different in ground and excited states, a photochemically controlled hyper‐landscape is proposed allowing for ratchet‐type reaction dynamics regulating signaling activity.

Photochemically induced dynamic nuclear polarization (photo-CIDNP) is an effect that produces non-Boltzmann nuclear spin polarization which can be observed as modification of signal intensity in NMR spectroscopy. The effect is well known in liquid-state NMR where it is explained most generally by the classical radical pair mechanism (RPM). In the solid-state, other mechanisms are operative in the spin-dynamics of radical pairs such as three-spin mixing (TSM) and differential decay (DD). Initially the solid-state photo-CIDNP effect has been solely observed on natural photosynthetic reaction centers (RCs). Therefore the analytical capacity of the method has been explored in experiments on reaction centers (RCs) of the purple bacterium of Rhodobacter (R.) sphaeroides. Here we will provide an account on phenomenology, theory, and analytical capacity of the solid-state photo-CIDNP effect.

Applying photo-CIDNP (photochemically induced dynamic nuclear polarization) MAS (magic-angle spinning) nuclear magnetic resonance to whole cells of Heliobacillus (Hb.) mobilis, we demonstrate that heliobacterial reaction centers are operational in two different states as indicated by the occurrence of a light-induced spin-correlated radical pair. A culture maintained anaerobically is called “Braunstoff” (German for “brown substance”). After exposure to oxygen, Braunstoff is converted to “Grünstoff” (“green substance”) as indicated by a color change due to the conversion of BChl g to Chl a_F. It is shown that electron transfer occurs symmetrically via both branches of cofactors in both forms. The donor and acceptor cofactors remain identical and unchanged upon conversion, while the intermediate accessory cofactors are transformed from BChl g to Chl a_F. The donor triplet state in Braunstoff is localized on the special pair donor and lives for 100 μs, demonstrating the absence of nearby carotenoids. In Grünstoff, the donor triplet becomes mobile and appears to be formed on an accessory cofactor.

Several techniques rely on electron–nuclear interactions to boost the polarization of nuclear spins in the solid phase. Averaging out of anisotropic interactions as a result of molecular tumbling strongly reduces the applicability of such hyperpolarization approaches in liquids. Here we show for the first time that anisotropic electron–nuclear interactions in solution can survive sufficiently long to generate nuclear spin polarization by the solid-state photo-CIDNP mechanism. A 10 000-fold NMR signal increase in solution was observed for a giant biomolecular complex of a photosynthetic membrane protein with a tumbling correlation time in the submicrosecond regime, corresponding to a molecular weight close to 1 MDa.

To date, solid-state photo-CIDNP experiments have been performed only using magic angle spinning NMR in a high-field regime, which is not associated with physiologically relevant spin dynamics. Here, we predict that nuclear spin polarization up to 10%, almost 9 orders of magnitude larger than thermal equilibrium polarization, can arise in cyclic photoreactions at the earth field due to a coherent three-spin mixing mechanism in the S–T_– or S–T₊ manifold. The effect is maximal at a distance of about 30 Å between the two radicals, which nearly coincides with the separation between the donor and secondary acceptor in natural photosynthetic reaction centers. Analytical expressions are given for a simple limiting case. Numerical computations for photosynthetic reaction centers show that many nuclei in the chromophores and their vicinity are likely to become polarized. The theory predicts that only modest hyperfine couplings of a few hundred kilohertz are required to generate polarization of more than 1% for radical–radical distances between 20 and 50 Å, that is, for a large number of radical pairs in electron-transfer proteins.

Phytochrome photoreceptors mediate light responses in plants and in many microorganisms. Here we report studies using ¹ H– ¹³ C magic-angle spinning NMR spectroscopy of the sensor module of cyanobacterial phytochrome Cph1. Two isoforms of the red-light absorbing Pr ground state are identified. Conclusive evidence that photoisomerization occurs at the C15-methine bridge leading to a β -facial disposition of the ring D is presented. In the far-red-light absorbing Pfr state, strong hydrogen-bonding interactions of the D -ring carbonyl group to Tyr-263 and of N24 to Asp-207 hold the chromophore in a tensed conformation. Signaling is triggered when Asp-207 is released from its salt bridge to Arg-472, probably inducing conformational changes in the tongue region. A second signal route is initiated by partner swapping of the B -ring propionate between Arg-254 and Arg-222.

Difference patterns of ¹³C NMR chemicals shifts for the protonation of a free model compound in organic solution, as reported in the literature (M. Stanek, K. Grubmayr [1998] Chem. Eur. J.4, 1653–1659), were compared with changes in the protonation state occurring during holophytochrome assembly from phycocyanobilin (PCB) and the apoprotein. Both processes induce identical changes in the NMR signals, indicating that the assembly process is linked to protonation of the chromophore, yielding a cationic cofactor in a heterogeneous, quasi‐liquid protein environment. The identity of both difference patterns implies that the protonation of a model compound in solution causes a partial stretching of the geometry of the macrocycle as found in the protein. In fact, the similarity of the difference pattern within the bilin family for identical chemical transformations represents a basis for future theoretical analysis. On the other hand, the change of the ¹³C NMR chemical shift pattern upon the Pr → Pfr photoisomerization is very different to that of the free model compound upon ZZZ → ZZE photoisomerization. Hence, the character of the double‐bond isomerization in phytochrome is essentially different from that of a classical photoinduced double‐bond isomerization, emphasizing the role of the protein environment in the modulation of this light‐induced process.

The cyanobacterial phytochrome Cph1 can be photoconverted between two thermally stable states, Pr and Pfr. The photochemically induced Pfr → Pr back-reaction has been followed at low temperature by magic-angle spinning (MAS) NMR spectroscopy, allowing two intermediates, Lumi-F and Meta-F, to be trapped. Employing uniformly ¹³C- and ¹⁵N-labeled open-chain tetrapyrrole chromophores, all four states—Pfr, Lumi-F, Meta-F, and Pr—have been structurally characterized. In the first step, the double bond photoisomerization forming Lumi-F occurs. The second step, the transformation to Meta-F, is driven by the release of the mechanical tension. This process leads to the break of the hydrogen bond of the ring D nitrogen to Asp-207 and triggers signaling. The third step is protonically driven allowing the hydrogen-bonding interaction of the ring D nitrogen to be restored. Compared to the forward reaction, the order of events is changed, probably caused by the different properties of the hydrogen bonding partners of N24, leading to the directionality of the photocycle.

Composed of the two bacteriochlorophyll cofactors, P(L) and P(M), the special pair functions as the primary electron donor in bacterial reaction centers of purple bacteria of Rhodobacter sphaeroides. Under light absorption, an electron is transferred to a bacteriopheophytin and a radical pair is produced. The occurrence of the radical pair is linked to the production of enhanced nuclear polarization called photochemically induced dynamic nuclear polarization (photo-CIDNP). This effect can be used to study the electronic structure of the special pair at atomic resolution by detection of the strongly enhanced nuclear polarization with laser-flash photo-CIDNP magic-angle spinning NMR on the carotenoid-less mutant R26. In the electronic ground state, P(L) is strongly disturbed, carrying a slightly negative charge. In the radical cation state, the ratio of total electron spin densities between P(L) and P(M) is 2:1, although it is 2.5:1 for the pyrrole carbons, 2.2:1 for all porphyrinic carbons, and 4:1 for the pyrrole nitrogen. It is shown that the symmetry break between the electronic structures in the electronic ground state and in the radical cation state is an intrinsic property of the special pair supermolecule, which is particularly attributable to a modification of the structure of P(L). The significant difference in electron density distribution between the ground and radical cation states is explained by an electric polarization effect of the nearby histidine.