Cheng-Han Huang
Research Subjects
Research Interests
Cheng-Han Huang has a total of 20 co-authors. Here are the top co-authors by number of shared publications:
J. Peng
2 shared publicationsJianbin Peng
Biochemistry and Molecular Genetics Laboratory, Lindsley F. Kimball Research Institute, New York Blood Center, 310 East, 67th St, New York, NY 10021, USA
2 shared publicationsM.E. Reid
2 shared publicationsY.X. Chen
2 shared publicationsYing Chen
Biochemistry and Molecular Genetics Laboratory, Lindsley F. Kimball Research Institute, New York Blood Center, 310 East, 67th St, New York, NY 10021, USA
2 shared publicationsChi-Chung Hui
Program in Developmental Biology, the Hospital for Sick Children and Department of Molecular and Medical Genetics, University of Toronto, Toronto, ON, Canada M5G 1X8
1 shared publication
Latest Publications
- 2 December 2009
- Published by Springer Nature in Cellular and Molecular Life Sciences
- Vol. 67 (8) , 1203-1218
The Rh protein family: gene evolution, membrane biology, and disease association
The Rh (Rhesus) genes encode a family of conserved proteins that share a structural fold of 12 transmembrane helices with members of the major facilitator superfamily. Interest in this family has arisen from the discovery of Rh factor’s involvement in hemolytic disease in the fetus and newborn, and of its homologs widely expressed in epithelial tissues. The Rh factor and Rh-associated glycoprotein (RhAG), with epithelial cousins RhBG and RhCG, form four subgroups conferring upon vertebrates a genealogical commonality. The past decade has heralded significant advances in understanding the phylogenetics, allelic diversity, crystal structure, and biological function of Rh proteins. This review describes recent progress on this family and the molecular insights gleaned from its gene evolution, membrane biology, and disease association. The focus is on its long evolutionary history and surprising structural conservation from prokaryotes to humans, pointing to the importance of its functional role, related to but distinct from ammonium transport proteins.
- 2 December 2009
- Published by Springer Nature in Cellular and Molecular Life Sciences
- Vol. 67 (8) , 1203-1218
The Rh protein family: gene evolution, membrane biology, and disease association
The Rh (Rhesus) genes encode a family of conserved proteins that share a structural fold of 12 transmembrane helices with members of the major facilitator superfamily. Interest in this family has arisen from the discovery of Rh factor’s involvement in hemolytic disease in the fetus and newborn, and of its homologs widely expressed in epithelial tissues. The Rh factor and Rh-associated glycoprotein (RhAG), with epithelial cousins RhBG and RhCG, form four subgroups conferring upon vertebrates a genealogical commonality. The past decade has heralded significant advances in understanding the phylogenetics, allelic diversity, crystal structure, and biological function of Rh proteins. This review describes recent progress on this family and the molecular insights gleaned from its gene evolution, membrane biology, and disease association. The focus is on its long evolutionary history and surprising structural conservation from prokaryotes to humans, pointing to the importance of its functional role, related to but distinct from ammonium transport proteins.
- 21 October 2006
- Published by Elsevier in Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression
- Vol. 1759 (11-12) , 562-572
Dusty protein kinases: Primary structure, gene evolution, tissue specific expression and unique features of the catalytic domain
- 21 October 2006
- Published by Elsevier in Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression
- Vol. 1759 (11-12) , 562-572
Dusty protein kinases: Primary structure, gene evolution, tissue specific expression and unique features of the catalytic domain
- Open Access
- 11 April 2006
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 103 (15) , 5881-5886
CeRh1 ( rhr-1 ) is a dominant Rhesus gene essential for embryonic development and hypodermal function in Caenorhabditis elegans
Rhesus (Rh) proteins share a conserved 12-transmembrane topology and specify a family of putative CO2 channels found in diverse species from microbes to human, but their functional essentiality and physiological importance in metazoans is unknown. To address this key issue and analyze Rh-engaged physiologic processes, we sought to explore model organisms with fewer Rh genes yet are tractable to genetic manipulations. In this article, we describe the identification in nematodes of two Rh homologues that are highly conserved and similar to human Rh glycoproteins, and we focus on their characterization in Caenorhabditis elegans. RNA analysis revealed that CeRh1 is abundantly expressed in all developmental stages, with highest levels in adults, whereas CeRh2 shows a differential and much lower expression pattern. In transient expression in human cells, both CeRh1 and CeRh2-GFP fusion proteins were routed to the plasma membrane. Transgenic analysis with GFP or LacZ-fusion reporters showed that CeRh1 is mainly expressed in hypodermal tissue, although it is also in other cell types. Mutagenesis analysis using deletion constructs mapped a minimal promoter region driving CeRh1 gene expression. Although CeRh2 was dispensable, RNA interference with CeRh1 caused a lethal phenotype mainly affecting late stages of C. elegans embryonic development, which could be rescued by the CbRh1 homologue from the worm Caenorhabditis briggsae. Taken together, our data provide direct evidence for the essentiality of the CeRh1 gene in C. elegans, establishing a useful animal model for investigating CO2 channel function by cross-species complementation.
- 11 April 2006
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 103 (15) , 5881-5886
Open AccessCeRh1 ( rhr-1 ) is a dominant Rhesus gene essential for embryonic development and hypodermal function in Caenorhabditis elegans
Rhesus (Rh) proteins share a conserved 12-transmembrane topology and specify a family of putative CO2 channels found in diverse species from microbes to human, but their functional essentiality and physiological importance in metazoans is unknown. To address this key issue and analyze Rh-engaged physiologic processes, we sought to explore model organisms with fewer Rh genes yet are tractable to genetic manipulations. In this article, we describe the identification in nematodes of two Rh homologues that are highly conserved and similar to human Rh glycoproteins, and we focus on their characterization in Caenorhabditis elegans. RNA analysis revealed that CeRh1 is abundantly expressed in all developmental stages, with highest levels in adults, whereas CeRh2 shows a differential and much lower expression pattern. In transient expression in human cells, both CeRh1 and CeRh2-GFP fusion proteins were routed to the plasma membrane. Transgenic analysis with GFP or LacZ-fusion reporters showed that CeRh1 is mainly expressed in hypodermal tissue, although it is also in other cell types. Mutagenesis analysis using deletion constructs mapped a minimal promoter region driving CeRh1 gene expression. Although CeRh2 was dispensable, RNA interference with CeRh1 caused a lethal phenotype mainly affecting late stages of C. elegans embryonic development, which could be rescued by the CbRh1 homologue from the worm Caenorhabditis briggsae. Taken together, our data provide direct evidence for the essentiality of the CeRh1 gene in C. elegans, establishing a useful animal model for investigating CO2 channel function by cross-species complementation.
- 14 October 2005
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 102 (43) , 15512-15517
Evolutionary conservation and diversification of Rh family genes and proteins
Rhesus (Rh) proteins were first identified in human erythroid cells and recently in other tissues. Like ammonia transporter (Amt) proteins, their only homologues, Rh proteins have the 12 transmembrane-spanning segments characteristic of transporters. Many think Rh and Amt proteins transport the same substrate, \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \setlength{\oddsidemargin}{-69pt} \begin{equation*}{\mathrm{NH}}_{3}/{\mathrm{NH}}_{4}^{+}\end{equation*} , whereas others think that Rh proteins transport CO 2 and Amt proteins NH 3 . In the latter view, Rh and Amt are different biological gas channels. To reconstruct the phylogeny of the Rh family and study its coexistence with and relationship to Amt in depth, we analyzed 111 Rh genes and 260 Amt genes. Although Rh and Amt are found together in organisms as diverse as unicellular eukaryotes and sea squirts, Rh genes apparently arose later, because they are rare in prokaryotes. However, Rh genes are prominent in vertebrates, in which Amt genes disappear. In organisms with both types of genes, Rh had apparently diverged away from Amt rapidly and then evolved slowly over a long period. Functionally divergent amino acid sites are clustered in transmembrane segments and around the gas-conducting lumen recently identified in Escherichia coli AmtB, in agreement with Rh proteins having new substrate specificity. Despite gene duplications and mutations, the Rh paralogous groups all have apparently been subject to strong purifying selection indicating functional conservation. Genes encoding the classical Rh proteins in mammalian red cells show higher nucleotide substitution rates at nonsynonymous codon positions than other Rh genes, a finding that suggests a possible role for these proteins in red cell morphogenetic evolution.- 14 October 2005
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 102 (43) , 15512-15517
Evolutionary conservation and diversification of Rh family genes and proteins
Rhesus (Rh) proteins were first identified in human erythroid cells and recently in other tissues. Like ammonia transporter (Amt) proteins, their only homologues, Rh proteins have the 12 transmembrane-spanning segments characteristic of transporters. Many think Rh and Amt proteins transport the same substrate, \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \setlength{\oddsidemargin}{-69pt} \begin{equation*}{\mathrm{NH}}_{3}/{\mathrm{NH}}_{4}^{+}\end{equation*} , whereas others think that Rh proteins transport CO 2 and Amt proteins NH 3 . In the latter view, Rh and Amt are different biological gas channels. To reconstruct the phylogeny of the Rh family and study its coexistence with and relationship to Amt in depth, we analyzed 111 Rh genes and 260 Amt genes. Although Rh and Amt are found together in organisms as diverse as unicellular eukaryotes and sea squirts, Rh genes apparently arose later, because they are rare in prokaryotes. However, Rh genes are prominent in vertebrates, in which Amt genes disappear. In organisms with both types of genes, Rh had apparently diverged away from Amt rapidly and then evolved slowly over a long period. Functionally divergent amino acid sites are clustered in transmembrane segments and around the gas-conducting lumen recently identified in Escherichia coli AmtB, in agreement with Rh proteins having new substrate specificity. Despite gene duplications and mutations, the Rh paralogous groups all have apparently been subject to strong purifying selection indicating functional conservation. Genes encoding the classical Rh proteins in mammalian red cells show higher nucleotide substitution rates at nonsynonymous codon positions than other Rh genes, a finding that suggests a possible role for these proteins in red cell morphogenetic evolution.- 24 May 2004
- Published by Wiley in Transfusion
- Vol. 44 (6) , 853-859
RH locus contraction in a novel Dc‐/D‐‐ genotype resulting from separate genetic recombination events
BACKGROUND: The rare phenotypes Dc‐ and D‐‐ lack the expression of E/e and CcEe antigens, respectively; their cotransmission in a single family has not been reported.STUDY DESIGN AND METHODS: Six members of a Chinese family with two exhibiting the Dc‐ phenotype were studied using standard serologic methods. Rh genotypes were analyzed by Southern blot, and RH loci, by exon PCR. Rh transcripts were characterized by gene‐specific RT‐PCR and sequencing.RESULTS: Although Rh typing detected two members as Dc‐ homozygotes, RFLP analysis and exon PCR showed them to be Dc‐ heterozygotes with a partial deletion of RHCE. cDNA sequencing showed the expression in the family of normal RHD and RHCe as well as hybrid transcripts, RHD(1‐9)/RHCE(10) and RHCE(1‐3)/RHD(4‐10). Thus, the Dc‐ members had the genotype of Dc‐/ D‐‐ and expressed both hybrid genes that were inherited from their parents, respectively.DISCUSSION: This is the first demonstration in a family that the Dc‐ and D‐‐ complexes neither are linked with a normal RHD or RHCE gene. The segregation of these two different hybrid genes with single break points sug‐gests their independent genetic origin and provides molecular insights into the dynamic nature of genomic rearrangements leading to RH locus contraction.
- 24 May 2004
- Published by Wiley in Transfusion
- Vol. 44 (6) , 853-859
RH locus contraction in a novel Dc‐/D‐‐ genotype resulting from separate genetic recombination events
BACKGROUND: The rare phenotypes Dc‐ and D‐‐ lack the expression of E/e and CcEe antigens, respectively; their cotransmission in a single family has not been reported.STUDY DESIGN AND METHODS: Six members of a Chinese family with two exhibiting the Dc‐ phenotype were studied using standard serologic methods. Rh genotypes were analyzed by Southern blot, and RH loci, by exon PCR. Rh transcripts were characterized by gene‐specific RT‐PCR and sequencing.RESULTS: Although Rh typing detected two members as Dc‐ homozygotes, RFLP analysis and exon PCR showed them to be Dc‐ heterozygotes with a partial deletion of RHCE. cDNA sequencing showed the expression in the family of normal RHD and RHCe as well as hybrid transcripts, RHD(1‐9)/RHCE(10) and RHCE(1‐3)/RHD(4‐10). Thus, the Dc‐ members had the genotype of Dc‐/ D‐‐ and expressed both hybrid genes that were inherited from their parents, respectively.DISCUSSION: This is the first demonstration in a family that the Dc‐ and D‐‐ complexes neither are linked with a normal RHD or RHCE gene. The segregation of these two different hybrid genes with single break points sug‐gests their independent genetic origin and provides molecular insights into the dynamic nature of genomic rearrangements leading to RH locus contraction.
- 11 March 2004
- Published by Wiley in Transfusion
- Vol. 44 (3) , 391-398
Deletion of arginine codon 229 in the Rhce gene alters e and f but not c antigen expression
BACKGROUND: Rh CcEe antigens occur as ce, Ce, cE, or CE alleles in the RBC membrane. Their epitope structures and the location of their cis interacting products remain to be defined.MATERIALS AND METHODS: A rare blood sample from a white male whose parents are first cousins was identified. Hemagglutination was performed using standard methods. RH structure and genotype was assessed by Southern blots. Rh transcripts were obtained by gene‐specific RT‐PCR and sequenced. The mutation was verified by genomic PCR assays.RESULTS: The donor's RBCs typed D+C–c+E–e–f(Rh6)– with a normal c dose, suggesting the Dc– phenotype. Further tests revealed a weak and qualitatively altered e expression. Southern blots indicated a genotype of Dce/dce without other gross changes. RT‐PCR detected a triplet deletion (Δ685AGA687) in the Rhce gene that specifies codon 229 for arginine (Arg229). Sequencing of the region around the mutated exon 5 confirmed the donor to be homozygous for the AGA deletion.DISCUSSION: Arg229 is invariant on external loop 4 and close to the Ala226Pro change specific for e/E polymorphism. The qualitative and quantitative alteration of e antigen defines Arg229 as a crucial component for e/E epitope presentation. Given a normal dose of c antigen, the disruption of f (Rh6) by Arg229 deletion suggests that external loop 4 is a major structural element contributing to the expression of RHCE cis interacting antigenic products.
- 11 March 2004
- Published by Wiley in Transfusion
- Vol. 44 (3) , 391-398
Deletion of arginine codon 229 in the Rhce gene alters e and f but not c antigen expression
BACKGROUND: Rh CcEe antigens occur as ce, Ce, cE, or CE alleles in the RBC membrane. Their epitope structures and the location of their cis interacting products remain to be defined.MATERIALS AND METHODS: A rare blood sample from a white male whose parents are first cousins was identified. Hemagglutination was performed using standard methods. RH structure and genotype was assessed by Southern blots. Rh transcripts were obtained by gene‐specific RT‐PCR and sequenced. The mutation was verified by genomic PCR assays.RESULTS: The donor's RBCs typed D+C–c+E–e–f(Rh6)– with a normal c dose, suggesting the Dc– phenotype. Further tests revealed a weak and qualitatively altered e expression. Southern blots indicated a genotype of Dce/dce without other gross changes. RT‐PCR detected a triplet deletion (Δ685AGA687) in the Rhce gene that specifies codon 229 for arginine (Arg229). Sequencing of the region around the mutated exon 5 confirmed the donor to be homozygous for the AGA deletion.DISCUSSION: Arg229 is invariant on external loop 4 and close to the Ala226Pro change specific for e/E polymorphism. The qualitative and quantitative alteration of e antigen defines Arg229 as a crucial component for e/E epitope presentation. Given a normal dose of c antigen, the disruption of f (Rh6) by Arg229 deletion suggests that external loop 4 is a major structural element contributing to the expression of RHCE cis interacting antigenic products.