Chin-Fu Chen
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Chin-Fu Chen has a total of 12 co-authors. Here are the top co-authors by number of shared publications:
- Adrienne Lewandowski
Peromyscus Genetic Stock Center, Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
1 shared publication Albert Y. Leung
Department of Genetics and Biochemistry, Jordan Hall 100, Clemson University, Clemson, SC 29634, USA
1 shared publicationChun-Huai Cheng
Department of Genetics and Biochemistry, 100 Jordan Hall, Clemson University, Clemson, SC 29634, USA
1 shared publication- Chun-Huai Cheng
Department of Genetics and Biochemistry, Clemson University, and Clemson University Genomics Institute, Clemson, SC 29634, USA
1 shared publication - Clifton M Ramsdell
Department of Genetics and the Carolina Center for Genome Sciences, University of North Carolina, Chapel Hill, North Carolina 27599, USA
1 shared publication Jack Szeto
Department of Electrical and Computer Engineering, Marquette University, Milwaukee, Wisconsin 53233, USA
1 shared publication
Latest Publications
- Open Access
- 1 January 2008
- Published by Springer Nature in BMC Genomics
- Vol. 9 (1) , 300
Expressed sequence tags from Peromyscus testis and placenta tissue: Analysis, annotation, and utility for mapping
Mice of the genus Peromyscus are found in nearly every habitat from Alaska to Central America and from the Atlantic to the Pacific. They provide an evolutionary outgroup to the Mus/Rattus lineage and serve as an intermediary between that lineage and humans. Although Peromyscus has been studied extensively under both field and laboratory conditions, research has been limited by the lack of molecular resources. Genes associated with reproduction typically evolve rapidly and thus are excellent sources of evolutionary information. In this study we describe the generation of two cDNA libraries, one from placenta and one from testis, characterize the resulting ESTs, and describe their utility for mapping the Peromyscus genome.
- 1 January 2008
- Published by Springer Nature in BMC Genomics
- Vol. 9 (1) , 300
Open AccessExpressed sequence tags from Peromyscus testis and placenta tissue: Analysis, annotation, and utility for mapping
Mice of the genus Peromyscus are found in nearly every habitat from Alaska to Central America and from the Atlantic to the Pacific. They provide an evolutionary outgroup to the Mus/Rattus lineage and serve as an intermediary between that lineage and humans. Although Peromyscus has been studied extensively under both field and laboratory conditions, research has been limited by the lack of molecular resources. Genes associated with reproduction typically evolve rapidly and thus are excellent sources of evolutionary information. In this study we describe the generation of two cDNA libraries, one from placenta and one from testis, characterize the resulting ESTs, and describe their utility for mapping the Peromyscus genome.
- 1 November 2007
- Published by Canadian Science Publishing in Canadian Journal of Physiology and Pharmacology
- Vol. 85 (11) , 1108-1115
Gene response of human monocytic cells for the detection of antimigraine activity of feverfew extractsThis article is one of a selection of papers published in this special issue (part 2 of 2) on the Safety and Efficacy of Natural Health Products.
The herb feverfew is a folk remedy for various conditions, including inflammation, fever, psoriasis, rheumatism, and asthma. Like many herbal medicines, feverfew's mechanisms of action in the human body are largely unknown and its active ingredients remain elusive. Very often, different extraction methods of herb material produce different physical and biochemical properties and variation in clinical efficacy. We identified 3 major methods of extraction for feverfew aerial parts and used microarray technology to test the hypothesis that extracts produced by different methods elicit different gene expression profiles. We have identified approximately 200 genes that are consistently regulated by the 2 presumptive active antimigraine feverfew extracts but not associated with the inactive extract. Our results suggest that the presumptive active feverfew extracts potently stimulate more genes in human cells than the inactive extracts. We also identified several genes as unique signatures for these active extracts. All 3 feverfew extracts exhibited similar blockades on lipopolysaccharide-mediated TNF-α (tumor necrosis factor alpha) release, implicating that TNF-α is not responsible for the differences in the effects of the 3 feverfew extracts in human cells. In contrast, the active extracts more effectively suppressed CCL2 (also known as monocyte chemoattractant protein 1, MCP-1) than the inactive extracts, suggesting that CCL2 is a potential cellular target for feverfew’s antimigraine effects.
- 1 November 2007
- Published by Canadian Science Publishing in Canadian Journal of Physiology and Pharmacology
- Vol. 85 (11) , 1108-1115
Gene response of human monocytic cells for the detection of antimigraine activity of feverfew extractsThis article is one of a selection of papers published in this special issue (part 2 of 2) on the Safety and Efficacy of Natural Health Products.
The herb feverfew is a folk remedy for various conditions, including inflammation, fever, psoriasis, rheumatism, and asthma. Like many herbal medicines, feverfew's mechanisms of action in the human body are largely unknown and its active ingredients remain elusive. Very often, different extraction methods of herb material produce different physical and biochemical properties and variation in clinical efficacy. We identified 3 major methods of extraction for feverfew aerial parts and used microarray technology to test the hypothesis that extracts produced by different methods elicit different gene expression profiles. We have identified approximately 200 genes that are consistently regulated by the 2 presumptive active antimigraine feverfew extracts but not associated with the inactive extract. Our results suggest that the presumptive active feverfew extracts potently stimulate more genes in human cells than the inactive extracts. We also identified several genes as unique signatures for these active extracts. All 3 feverfew extracts exhibited similar blockades on lipopolysaccharide-mediated TNF-α (tumor necrosis factor alpha) release, implicating that TNF-α is not responsible for the differences in the effects of the 3 feverfew extracts in human cells. In contrast, the active extracts more effectively suppressed CCL2 (also known as monocyte chemoattractant protein 1, MCP-1) than the inactive extracts, suggesting that CCL2 is a potential cellular target for feverfew’s antimigraine effects.
- Open Access
- 11 April 2007
- Published by Wiley in Evidence-Based Complementary and Alternative Medicine
- Vol. 6 (1) , 91-98
Regulation of Cellular Metabolism and Cytokines by the Medicinal Herb Feverfew in the Human Monocytic THP‐1 Cells
The herb feverfew is a folk remedy for various symptoms including inflammation. Inflammation has recently been implicated in the genesis of many diseases including cancers, atherosclerosis and rheumatoid arthritis. The mechanisms of action of feverfew in the human body are largely unknown. To determine the cellular targets of feverfew extracts, we have utilized oligo microarrays to study the gene expression profiles elicited by feverfew extracts in human monocytic THP‐1 cells. We have identified 400 genes that are consistently regulated by feverfew extracts. Most of the genes are involved in cellular metabolism. However, the genes undergoing the highest degree of change by feverfew treatment are involved in other pathways including chemokine function, water homeostasis and heme‐mediated signaling. Our results also suggest that feverfew extracts effectively reduce Lipopolysaccharides (LPS)‐mediated TNF‐α and CCL2 (MCP‐1) releases by THP‐1 cells. We hypothesize that feverfew components mediate metabolism, cell migration and cytokine production in human monocytes/macrophages.
- 11 April 2007
- Published by Wiley in Evidence-Based Complementary and Alternative Medicine
- Vol. 6 (1) , 91-98
Open AccessRegulation of Cellular Metabolism and Cytokines by the Medicinal Herb Feverfew in the Human Monocytic THP‐1 Cells
The herb feverfew is a folk remedy for various symptoms including inflammation. Inflammation has recently been implicated in the genesis of many diseases including cancers, atherosclerosis and rheumatoid arthritis. The mechanisms of action of feverfew in the human body are largely unknown. To determine the cellular targets of feverfew extracts, we have utilized oligo microarrays to study the gene expression profiles elicited by feverfew extracts in human monocytic THP‐1 cells. We have identified 400 genes that are consistently regulated by feverfew extracts. Most of the genes are involved in cellular metabolism. However, the genes undergoing the highest degree of change by feverfew treatment are involved in other pathways including chemokine function, water homeostasis and heme‐mediated signaling. Our results also suggest that feverfew extracts effectively reduce Lipopolysaccharides (LPS)‐mediated TNF‐α and CCL2 (MCP‐1) releases by THP‐1 cells. We hypothesize that feverfew components mediate metabolism, cell migration and cytokine production in human monocytes/macrophages.
- 1 October 2006
- Published by Elsevier in Computational Biology and Chemistry
- Vol. 30 (5) , 372-381
Identification of critical genes in microarray experiments by a Neuro-Fuzzy approach
- 1 October 2006
- Published by Elsevier in Computational Biology and Chemistry
- Vol. 30 (5) , 372-381
Identification of critical genes in microarray experiments by a Neuro-Fuzzy approach