CSCourtney L. Scaife

Courtney L. Scaife

*This is an algorithmically generated author record based on publicly available information.

Current Organizations / Institutes

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Previous Organizations / Institutes

The organizations / institutes from the scholar's other articles in the past ten years


Courtney L. Scaife has a total of 229 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Open Access

    Gastrointestinal Cancer Surgery in Patients on Maintenance Hemodialysis: A Prisma Guided Systematic Review and Propensity Score Matched Cohort Analysis

    by Ali Abdelhady, Yara Sakr, Rayner P. Cardoso, Eman Zineldin, Courtney Scaife, Marshall Baker, Erin Ward, T. Clark Gamblin

    Background: Patients receiving maintenance hemodialysis (HD) have limited physiologic reserve and high competing cardiometabolic risk, yet surgery remains central to cure for many gastrointestinal (GI) malignancies. Evidence describing oncologic surgery in this population is fragmented across cancer sites and data sources. Methods: A PRISMA guided systematic review of adult patients on maintenance HD undergoing resection for GI malignancy was performed. The review searched PubMed, Embase, Web of Science, and CENTRAL through March 2026 and included comparative observational studies reporting perioperative or long‐term outcomes. In parallel, a propensity‐score matched TriNetX cohort of adults undergoing major GI cancer surgery between 2010 and 2025. HD was defined by preoperative ESRD and dialysis dependence codes. Patients were matched 1:1 on age, sex, race, and ethnicity. The primary outcome was 30‐day mortality; secondary outcomes were 30‐day sepsis, pneumonia, and acute myocardial infarction (AMI). Results: The review included 20 studies after screening 1,744 deduplicated records and 83 full texts. Colorectal surgery provided the most robust evidence: dialysis was associated with markedly higher mortality and serious morbidity, and a published meta‐analysis of colorectal surgery estimated a pooled mortality odds ratio (OR) of 4.12. Gastric, pancreatic, and hepatobiliary reports were smaller but showed the same direction of effect, with frequent infectious and cardiovascular complications and substantial competing non‐cancer mortality. In the current TriNetX analysis, 3,757 HD patients were matched to 3757 non‐HD controls. Thirty‐day mortality was 11.4% in HD patients versus 3.0% in controls (OR: 4.21, 95% CI: 3.40–5.22). HD patients also had higher rates of sepsis (14.1% vs. 3.9%; OR 4.06), pneumonia (8.1% vs. 2.2%; OR: 4.02), and AMI (4.3% vs. 0.9%; OR: 5.18). Conclusions: Across GI cancer operations, maintenance HD identifies a very high‐risk surgical phenotype. The dominant short‐term pattern is excess death, infection, and cardiopulmonary morbidity; the dominant long‐term pattern is competing non‐cancer mortality. Surgery remains appropriate for selected patients with resectable disease, but perioperative dialysis timing, multidisciplinary optimization, and treatment in experienced centers are critical.

  • Open Access

    Supplementary Data 1 from Comparative Genomic Analysis of Pancreatic Acinar Cell Carcinoma (PACC) and Pancreatic Ductal Adenocarcinoma (PDAC) Unveils New Actionable Genomic Aberrations in PACC

    by Vaia Florou, Andrew Elliott, Matthew H. Bailey, David Stone, Kajsa Affolter, Heloisa P. Soares, Chris Nevala-Plagemann, Courtney Scaife, Phillip Walker, W. Michael Korn, et al.

  • Open Access

    Supplementary Data 1 from Comparative Genomic Analysis of Pancreatic Acinar Cell Carcinoma (PACC) and Pancreatic Ductal Adenocarcinoma (PDAC)Unveils New Actionable Genomic Aberrations in PACC

    by Vaia Florou, Andrew Elliott, Matthew H. Bailey, David Stone, Kajsa Affolter, Heloisa P. Soares, Chris Nevala-Plagemann, Courtney Scaife, Phillip Walker, W. Michael Korn, et al.

  • Open Access

    Data from Comparative Genomic Analysis of Pancreatic Acinar Cell Carcinoma (PACC) and Pancreatic Ductal Adenocarcinoma (PDAC)Unveils New Actionable Genomic Aberrations in PACC

    by Vaia Florou, Andrew Elliott, Matthew H. Bailey, David Stone, Kajsa Affolter, Heloisa P. Soares, Chris Nevala-Plagemann, Courtney Scaife, Phillip Walker, W. Michael Korn, et al.

    Purpose: Pure pancreatic acinar cell carcinomas (PACC) are rare malignancies with no established treatment. PACC demonstrates significant genetic intertumoral heterogeneity with multiple pathways involved, suggesting using targeted cancer therapeutics to treat this disease. We aggregated one of the largest datasets of pure PACC to examine the genomic variability and explore patient-specific therapeutic targets. Experimental Design: PACC specimens (n=51) underwent next-generation sequencing (NGS) of DNA (n=29) or whole exome [n=22]) and RNA (whole transcriptome, n=29) at a commercial laboratory. We performed comparative analyses of a genomic cohort of pancreatic ductal adenocarcinomas (PDAC, n=4205). In parallel, we conducted a retrospective review patients with PACC treated at Huntsman Cancer Institute (HCI). Results: The real-world dataset included samples from 51 patients with PACC. We found key molecular differences between pure PACC and PDAC, highlighting the unique characteristics of pure PACC. Major differences in PACC include lower MAPK signaling and less stromal cell abundance compared to PDAC. Pure PACC showed genomic loss-of-heterozygosity to largely coincide with mutations in BRCA1, BRCA2, and PALB2. Of the seven patients treated at HCI, one had a tumor that harbored a BRAF-V600E mutation. Leveraging precision oncology, this patient is being treated with encorafenib plus binimetinib, achieving an exceptionally durable and ongoing complete response of more than three years. Conclusions: There are major differences between PACC and PDAC, including downregulation of the MAPK signaling pathway, and less stromal cell abundance. In addition, genomic characterization of pure PACC revealed frequent targetable alterations, which can guide patient treatment.

  • Open Access

    Supplementary Data 1 from Comparative Genomic Analysis of Pancreatic Acinar Cell Carcinoma (PACC) and Pancreatic Ductal Adenocarcinoma (PDAC)Unveils New Actionable Genomic Aberrations in PACC

    by Vaia Florou, Andrew Elliott, Matthew H. Bailey, David Stone, Kajsa Affolter, Heloisa P. Soares, Chris Nevala-Plagemann, Courtney Scaife, Phillip Walker, W. Michael Korn, et al.

  • Open Access

    Integrated Molecular Characterization of Intraductal Papillary Mucinous Neoplasms: An NCI Cancer Moonshot Precancer Atlas Pilot Project

    by Alexander Semaan, Vincent Bernard, Justin W Wong, Yuki Makino, Daniel B. Swartzlander, Kimal I. Rajapakshe, Jaewon J. Lee, Adam Officer, Christian Max Schmidt, Howard H. Wu, et al.

    Intraductal papillary mucinous neoplasms (IPMN) are cystic precursor lesions to pancreatic ductal adenocarcinoma (PDAC). IPMNs undergo multistep progression from low-grade (LG) to high-grade (HG) dysplasia, culminating in invasive neoplasia. While patterns of IPMN progression have been analyzed using multiregion sequencing for somatic mutations, there is no integrated assessment of molecular events, including copy-number alterations (CNA) and transcriptional changes that accompany IPMN progression. We performed laser capture microdissection on surgically resected IPMNs of varying grades of histologic dysplasia obtained from 23 patients, followed by whole-exome and whole-transcriptome sequencing. Overall, HG IPMNs displayed a significantly greater aneuploidy score than LG lesions, with chromosome 1q amplification being associated with HG progression and with cases that harbored co-occurring PDAC. Furthermore, the combined assessment of single-nucleotide variants (SNV) and CNAs identified both linear and branched evolutionary trajectories, underscoring the heterogeneity in the progression of LG lesions to HG and PDAC. At the transcriptome level, upregulation of MYC-regulated targets and downregulation of transcripts associated with the MHC class I antigen presentation machinery as well as pathways related to glycosylation were a common feature of progression to HG. In addition, the established PDAC transcriptional subtypes (basal-like and classical) were readily apparent within IPMNs. Taken together, this work emphasizes the role of 1q copy-number amplification as a putative biomarker of high-risk IPMNs, underscores the importance of immune evasion even in noninvasive precursor lesions, and reinforces that evolutionary pathways in IPMNs are heterogenous, comprised of both SNV and CNA-driven events. Significance: Integrated molecular analysis of genomic and transcriptomic alterations in the multistep progression of IPMNs, which are bona fide precursors of pancreatic cancer, identifies features associated with progression of low-risk lesions to high-risk lesions and cancer, which might enable patient stratification and cancer interception strategies.


  • Open Access

    Data from Comparative Genomic Analysis of Pancreatic Acinar Cell Carcinoma (PACC) and Pancreatic Ductal Adenocarcinoma (PDAC) Unveils New Actionable Genomic Aberrations in PACC

    by Vaia Florou, Andrew Elliott, Matthew H. Bailey, David Stone, Kajsa Affolter, Heloisa P. Soares, Chris Nevala-Plagemann, Courtney Scaife, Phillip Walker, W. Michael Korn, et al.

    Purpose:Pure pancreatic acinar cell carcinomas (PACC) are rare malignancies with no established treatment. PACC demonstrates significant genetic intertumoral heterogeneity with multiple pathways involved, suggesting using targeted cancer therapeutics to treat this disease. We aggregated one of the largest datasets of pure PACC to examine the genomic variability and explore patient-specific therapeutic targets.Experimental Design:PACC specimens (n = 51) underwent next-generation sequencing of DNA (n = 29) or whole exome (n = 22) and RNA (whole transcriptome, n = 29) at a commercial laboratory. We performed comparative analyses of a genomic cohort of pancreatic ductal adenocarcinomas (PDAC; n = 4,205). In parallel, we conducted a retrospective review of patients with PACC treated at Huntsman Cancer Institute (HCI).Results:The real-world dataset included samples from 51 patients with PACC. We found key molecular differences between pure PACC and PDAC, highlighting the unique characteristics of pure PACC. Major differences in PACC include lower MAPK signaling and less stromal cell abundance compared with PDAC. Pure PACC showed genomic loss-of-heterozygosity to largely coincide with mutations in BRCA1, BRCA2, and PALB2. Of the 7 patients treated at HCI, one had a tumor that harbored a BRAF-V600E mutation. Leveraging precision oncology, this patient is being treated with encorafenib plus binimetinib, achieving an exceptionally durable and ongoing complete response of more than 3 years.Conclusions:There are major differences between PACC and PDAC, including downregulation of the MAPK signaling pathway, and less stromal cell abundance. In addition, genomic characterization of pure PACC revealed frequent targetable alterations, which can guide patient treatment.

  • Open Access

    Data from Comparative Genomic Analysis of Pancreatic Acinar Cell Carcinoma (PACC) and Pancreatic Ductal Adenocarcinoma (PDAC) Unveils New Actionable Genomic Aberrations in PACC

    by Vaia Florou, Andrew Elliott, Matthew H. Bailey, David Stone, Kajsa Affolter, Heloisa P. Soares, Chris Nevala-Plagemann, Courtney Scaife, Phillip Walker, W. Michael Korn, et al.

    Purpose:Pure pancreatic acinar cell carcinomas (PACC) are rare malignancies with no established treatment. PACC demonstrates significant genetic intertumoral heterogeneity with multiple pathways involved, suggesting using targeted cancer therapeutics to treat this disease. We aggregated one of the largest datasets of pure PACC to examine the genomic variability and explore patient-specific therapeutic targets.Experimental Design:PACC specimens (n = 51) underwent next-generation sequencing of DNA (n = 29) or whole exome (n = 22) and RNA (whole transcriptome, n = 29) at a commercial laboratory. We performed comparative analyses of a genomic cohort of pancreatic ductal adenocarcinomas (PDAC; n = 4,205). In parallel, we conducted a retrospective review of patients with PACC treated at Huntsman Cancer Institute (HCI).Results:The real-world dataset included samples from 51 patients with PACC. We found key molecular differences between pure PACC and PDAC, highlighting the unique characteristics of pure PACC. Major differences in PACC include lower MAPK signaling and less stromal cell abundance compared with PDAC. Pure PACC showed genomic loss-of-heterozygosity to largely coincide with mutations in BRCA1, BRCA2, and PALB2. Of the 7 patients treated at HCI, one had a tumor that harbored a BRAF-V600E mutation. Leveraging precision oncology, this patient is being treated with encorafenib plus binimetinib, achieving an exceptionally durable and ongoing complete response of more than 3 years.Conclusions:There are major differences between PACC and PDAC, including downregulation of the MAPK signaling pathway, and less stromal cell abundance. In addition, genomic characterization of pure PACC revealed frequent targetable alterations, which can guide patient treatment.

  • Open Access

    Supplementary Data 1 from Comparative Genomic Analysis of Pancreatic Acinar Cell Carcinoma (PACC) and Pancreatic Ductal Adenocarcinoma (PDAC) Unveils New Actionable Genomic Aberrations in PACC

    by Vaia Florou, Andrew Elliott, Matthew H. Bailey, David Stone, Kajsa Affolter, Heloisa P. Soares, Chris Nevala-Plagemann, Courtney Scaife, Phillip Walker, W. Michael Korn, et al.

  • Open Access

    Data from Comparative Genomic Analysis of Pancreatic Acinar Cell Carcinoma (PACC) and Pancreatic Ductal Adenocarcinoma (PDAC) Unveils New Actionable Genomic Aberrations in PACC

    by Vaia Florou, Andrew Elliott, Matthew H. Bailey, David Stone, Kajsa Affolter, Heloisa P. Soares, Chris Nevala-Plagemann, Courtney Scaife, Phillip Walker, W. Michael Korn, et al.

    Background:Pure pancreatic acinar cell carcinomas (PACC) are rare malignancies with no established treatment. PACC demonstrates significant genetic intertumoral heterogeneity with multiple pathways involved, suggesting using targeted cancer therapeutics to treat this disease. We aggregated one of the largest datasets of pure PACC to examine the genomic variability and explore patient-specific therapeutic targets.Methods:PACC specimens (n = 51) underwent next-generation sequencing of DNA (n = 29) or whole exome (n = 22) and RNA (whole transcriptome, n = 29) at a commercial laboratory. We performed comparative analyses of a genomic cohort of pancreatic ductal adenocarcinomas (PDAC; n = 4,205). In parallel, we conducted a retrospective review of patients with PACC treated at Huntsman Cancer Institute (HCI).Results:The real-world dataset included samples from 51 patients with PACC. We found key molecular differences between pure PACC and PDAC, highlighting the unique characteristics of pure PACC. Major differences in PACC include lower MAPK signaling and less stromal cell abundance compared with PDAC. Pure PACC showed genomic loss-of-heterozygosity to largely coincide with mutations in BRCA1, BRCA2, and PALB2. Of the 7 patients treated at HCI, one had a tumor that harbored a BRAF-V600E mutation. Leveraging precision oncology, this patient is being treated with encorafenib plus binimetinib, achieving an exceptionally durable and ongoing complete response of more than 3 years.Conclusions:There are major differences between PACC and PDAC, including downregulation of the MAPK signaling pathway, and less stromal cell abundance. In addition, genomic characterization of pure PACC revealed frequent targetable alterations, which can guide patient treatment.