José Antonio Cruz-Barraza

The Gulf of California, one of the world’s most biodiverse marine ecosystems, is also heavily exploited by fisheries. Among its fish fauna are species that, although currently underappreciated, may become commercially important in the future. Enhancing our biological knowledge of these species is crucial for monitoring population dynamics and community changes. Fish parasites offer valuable insights into host ecology, including feeding habits and population structure. In this study, we document the metazoan parasite fauna of Trichiurus nitens (Trichiuridae) from four locations in the eastern Gulf of California, Mexico. A total of 165 fish specimens were examined, revealing five parasite species identified using both morphological characteristics and molecular markers: the monogenean Octoplectanocotyla travassosi, the trematode Lecithochirium sinaloense, and three nematodes – Anisakis typica A, Skrjabinisakis brevispiculata, and Spinitectus sp. Among these, L. sinaloense was the most prevalent. Although parasite species richness was similar between small and large fish, overall parasite abundance was higher in larger specimens. Moreover, parasite assemblages did not vary significantly across the study locations. These findings suggest that T. nitens exhibits a specialized feeding strategy, relying on a narrow range of prey throughout its life, and that the oceanographic variability does not limit fish movement in the region. Future studies encompassing a broader geographical scale, additional fish size classes, and different climatic seasons are needed to further elucidate the ecological role of this species. This work provides novel insights into the host-parasite dynamics of T. nitens and establishes a valuable baseline for ecosystem monitoring under global change scenarios.

Some parasitic nematodes from the Anisakidae family can cause stomach illnesses in humans. These parasites naturally inhabit fish and mollusks and can infect us if we consume raw or undercooked seafood. This condition, known as anisakidosis, is increasing globally. Despite its rise, awareness of anisakidosis remains low in many regions, both among the general public and medical professionals. This is partly because identifying these nematodes is a challenging task, and effective diagnostic tools are not widely accessible. To address this issue, it is essential for consumers, healthcare providers, policymakers, and seafood industry professionals to work together. By improving knowledge and implementing preventive measures, we can reduce the risk of anisakidosis and protect public health.

Alien species constitute one of the main threats to freshwater ecosystems, negatively impacting biodiversity, economy, and ecosystem services. Here, we use morphological and genetic data to show the presence of a new alien freshwater sponge in Europe, Rosulaspongilla rhadinaea, a Ponto-Caspian species which recently has been found in the fluvial port of Seville (Guadalquivir River, Spain). We also reviewed the mechanisms and adaptations of freshwater sponges for dispersal. The gemmule is the key structure for understanding their life history, evolution, and dispersal capacity, since their high salinity tolerance may have made possible the spreading of these sponges on the hulls of ocean-going ships that frequent freshwater ports. Once established, they are dispersed via river currents and intraregional boat traffic through the network of interconnected channels, which act as invasion corridors. Transport via phoresy attached to mobile animal vectors such as birds (especially migrating birds) has also been demonstrated in several sponge species. Gemmules may be attached on the feathers and scales, or even to be transported in the guts of these animals, followed by defecation of viable gemmules. Transport associated with other invasive freshwater species, such as mussels, cannot be ruled out. The scarcity of taxonomic studies of freshwater sponges in the Iberian Peninsula might explain why the species had not been recorded.

Identifying cryptic species is pivotal for understanding marine biodiversity and optimizing strategies for its conservation. A robust understanding of poriferan diversity is a complex endeavour. It has also been extremely hampered by the high phenotypic plasticity and the limited number of diagnostic characters. Mycale (Carmia) cecilia has different body colours, even among individuals living together. We tested whether the colour variation could be due to polymorphism, phenotypic plasticity or cryptic speciation. Phylogenetic reconstructions of nuclear and mitochondrial loci were congruent. Individuals of different body colour did not cluster together and had high levels of genetic divergence. Furthermore, the green morphotype clustered in almost all reconstructions with Mycale (C.) phyllophila, as both showed higher gene similarity at the transcriptomic level (public transcriptome). Morphologically, the green individuals consistently showed discrepancies from the red ones. These results suggest that all individuals with the same body colour, either red or green, correspond to the same species, while individuals with different body colours probably belong to different species. These results reveal high levels of morphologic and genetic diversity, which could have important implications for what is known as M. (C.) cecilia and the Mycalidae systematics.

Background: The Eastern Tropical Pacific (ETP) harbors a great diversity of Porifera. In particular, the Aplysina genus has acquired biotechnological and pharmacological importance. Nevertheless, the ecological aspects of their species and populations have been poorly studied. Aplysina gerardogreeni is the most conspicuous verongid sponge from the ETP, where it is usually found on rocky-coralline ecosystems. We evaluated the polymorphism levels of 18 microsatellites obtained from next-generation sequencing technologies. Furthermore, we tested the null hypothesis of panmixia in A. gerardogreeni population from two Mexican-Pacific localities. Methods and results: A total of 6,128,000 paired reads were processed of which primer sets of 18 microsatellites were designed. The loci were tested in 64 specimens from Mazatlan, Sinaloa (N = 32) and Isabel Island, Nayarit (N = 32). The microsatellites developed were moderately polymorphic with a range of alleles between 2 and 11, and Ho between 0.069 and 0.785. Fifteen loci displayed significant deviation from the Hardy–Weinberg equilibrium. No linkage disequilibrium was detected. A strong genetic structure was confirmed between localities using hierarchical Bayesian analyses, principal coordinates analyses, and fixation indices (F _ST = 0.108*). All the samples were assigned to their locality; however, there was a small sign of mixing between localities. Conclusions: Despite the moderate values of diversity in microsatellites, they showed a strong signal of genetic structure between populations. We suggest that these molecular markers can be a relevant tool to evaluate all populations across the ETP. In addition, 17 of these microsatellites were successfully amplified in the species A. fistularis and A. lacunosa, meaning they could also be applied in congeneric sponges from the Caribbean Sea. The use of these molecular markers in population genetic studies will allow assessment of the connectivity patterns in species of the Aplysina genus.

Background: Mycale cecilia is an abundant Eastern Tropical Pacific sponge living in a wide variety of habitats, including coral reefs where it may directly interact with corals. It is also known to possess secondary metabolites of pharmacological value. These aspects highlight the importance of having a better understanding of its biology, and genetic and population diversity. Methods and results: In the present study, we isolated and characterized twelve novel microsatellite loci by Illumina MiSeq sequencing. The loci were tested in 30 specimens collected from two coral reef localities (La Paz, Baja California Sur and Isabel Island, Nayarit) from the Mexican Pacific using M13(-21) labeling. All loci were polymorphic, with two to nine alleles per locus. Expected heterozygosities varied from 0.616 to 0.901. Eleven loci were tested and successfully amplified in M. microsigmatosa from the Gulf of Mexico. Conclusion: Here we report the first microsatellite loci developed for a sponge species from the Eastern Pacific coast. These molecular markers will be used for population genetic studies of M. cecilia, and potentially in other congeneric species; particularly in vulnerable marine areas that require protection, such as coral reefs.

At present, only 11 species of harpacticoid copepods have been described from the deep sea of the Gulf of California and the west coast of the Baja California Peninsula. These efforts had until recently been focused exclusively on the families Ameiridae Boeck, Argestidae Por, and Rhizothrichidae Por. Preliminary analyses revealed also an important contribution of the subfamily Stenheliinae Brady (Miraciidae Dana) to the overall species richness and diversity of deep-sea benthic copepods from the west coast of the Baja California Peninsula, and the central and southern Gulf of California. One new species of the genus Wellstenhelia Karanovic & Kim, 2014, We. euterpoides sp. nov., and one new genus and species, Wellstenvalia wellsi gen. et sp. nov., are herein described from sediment samples taken at eight sampling stations in the west coast of the Baja California Peninsula and in the central and southern Gulf of California. Wellstenhelia euterpoides sp. nov. seems to be closely related to We. euterpe Karanovic & Kim, 2014 with which it shares the reduced armature complement of the baseoendopod of the female fifth leg. The so far monotypic genus Wellstenvalia gen. nov. was found to be closely related to Muohuysia Özdikmen, 2009 and Wellstenhelia. Some comments on the relationships between the new genus proposed here and other stenheliin genera and species are provided as a contribution towards the monophyly of the subfamily.

Despite the ecological importance and the potential pharmacological application of the sponge Mycale (Carmia) cecilia, it is uncertain whether the body-color variation, even in individuals coexisting in the same area, is due to intraspecific phenotypic plasticity or corresponds to taxonomic divergence. This uncertainty is relatively common in several Porifera groups, which lack the resolution of morphological diagnostic characters and slow-evolving mitochondrial genomes as occurs in early splitting lineages. We sequenced the RNA of six individuals with two different body-color (green-morphotype and red-morphotype) collected at the same time side by side. High-throughput sequencing of cDNA libraries produced ~ 129 million reads with a length of 150 bp. Each morphotype was assembled separately owing to the low overlapping in the global assembly. Metatranscriptome de novo assembly of the trimmed and normalized reads produced 461 thousand transcripts for the green-morphotype and 342 thousand for the red-morphotype (respectively). Over 30% of the transcripts contained Open Reading Frames (ORFs) with functional significance. BUSCO analysis of the ORFs of putative poriferan origin (31.3% green or 30.4% red) indicated that our assemblies are 60% complete. This is the first attempt to evaluate the morphological diversity in the species M. (C.) cecilia and the phylum Porifera at the transcriptomic level. Due to the minimum overlap of the assembly and that, the red-morphotype diverged significantly from the green-morphotype (original color of M. (C.) cecilia). Therefore, we suggest that the red-morphotype should undergo a complete taxonomic investigation and its taxonomic status be reviewed. We expect that the transcriptome assembly metrics can be useful for comparing other transcriptome assemblies of non-model organisms.