JHJonathan D. R. Houghton

Jonathan D. R. Houghton

*This is an algorithmically generated author record based on publicly available information.

Current Organizations / Institutes

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Previous Organizations / Institutes

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Jonathan D. R. Houghton has a total of 91 co-authors. Here are the top co-authors by number of shared publications:


Latest Publications

  • Open Access

    Chemical Defenses in Medusozoa

    by Oliver J. Lincoln, Jonathan D. R. Houghton, Muhammad Zakariya, Chiara Lauritano, Isabella D’ambra

    Cnidarian defensive strategies are commonly associated with the toxins they synthesize. Because toxins have negative, sometimes lethal, effects on humans, research has focused on them for medical and biotechnological applications. However, Cnidaria possess a variety of defensive systems complementing toxins. In recent decades, ecological and biotechnological studies have shed light on these systems, particularly in Anthozoa, while the knowledge of defensive systems different from toxins has remained limited in Medusozoa (Cubozoa, Hydrozoa, Scyphozoa and Staurozoa). In this review, we collected the scattered information available in the literature and organized it into four main topics: UV-light protection compounds, antioxidants, antimicrobial peptides, and endosymbionts. Within the topics, we found the largest amount of data refers to antimicrobial activities, which suggests this line of research as a potential exploitation of this group of organisms often appearing in large aggregates. We also found that some Medusozoa have been studied in detail as model organisms, although the close phylogenetic relationship among classes suggests that some defensive strategies may be common to other members of different classes. Indeed, an integrated understanding of defensive systems has the potential to inform not only ecological and evolutionary frameworks, but also biotechnological applications—from the identification of novel antioxidants or antimicrobial agents to the valorization of Medusozoan biomass.

  • Open Access

    Assessing the potential of acoustic telemetry to underpin the regional management of basking sharks (Cetorhinus maximus)

    by James Thorburn, Patrick C. Collins, Amy Garbett, Heather Vance, Natasha Phillips, Alan Drumm, Joseph Cooney, Catherine Waters, Niall Ó’maoiléidigh, Emmett Johnston, et al.

    Acoustic telemetry can provide valuable space-use data for a range of marine species. Yet the deployment of species-specific arrays over vast areas to gather data on highly migratory vertebrates poses formidable challenges, often rendering it impractical. To address this issue, we pioneered the use of acoustic telemetry on basking sharks (Cetorhinus maximus) to test the feasibility of using broadscale, multi-project acoustic receiver arrays to track the movements of this species of high conservation concern through the coastal waters of Ireland, Northern Ireland, and Scotland. Throughout 2021 and 2022, we tagged 35 basking sharks with acoustic transmitters off the west coast of Ireland; 27 of these were detected by 96 receiver stations throughout the study area (n = 9 arrays) with up to 216 detections of an individual shark (mean = 84, s.d. 65). On average, sharks spent ~ 1 day at each acoustic array, with discrete residency periods of up to nine days. Twenty-one sharks were detected at multiple arrays with evidence of inter-annual site fidelity, with the same individuals returning to the same locations in Ireland and Scotland over 2 years. Eight pairs of sharks were detected within 24 h of each other at consecutive arrays, suggesting some level of social coordination and synchronised movement. These findings demonstrate how multi-project acoustic telemetry can support international, cost-effective monitoring of basking sharks and other highly mobile species. Decision support tools such as these can consolidate cross-border management strategies, but to achieve this goal, collaborative efforts across jurisdictions are necessary to establish the required infrastructure and secure ongoing support.


  • Open Access

    Comparability of Outputs between Traditional and Simulation-Based Approaches to Collision Risk Modelling

    by Nicholas Horne, Pál Schmitt, Ross Culloch, Ben Wilson, Jonathan D. R. Houghton, Andrew Dale, Louise Kregting

    Tidal stream energy is a predictable renewable energy source; however, environmental consent of developments remains a key barrier to the expansion of this industry. Uncertainty around collision risk, i.e., the risk of animals colliding with a tidal device, remains a major barrier to consent. Collision risk models are used in environmental impact assessments. Common collision risk models, like the Encounter Rate and Band Models, have limitations in accommodating new device designs and flexibility. To address this, a simulation-based approach was developed. To provide confidence in its use, it is important that the simulation-based approach is compared against the Band model and the Encounter rate model, which have been regularly used in the UK. Here, we compared collision risk estimates from the three models under the same exact conditions and one alternative condition. The results of the main scenario (where all conditions were the same) showed that the three models produced comparable results with <6% difference across all models. However, for the alternative scenario, the simulation-based approach produced a result three times higher compared to other models, which could not account for a vertical approach angle. These findings provide confidence in the simulation-based approach whilst also outlining the importance of selecting an appropriate collision risk model, tailored to the specific assessment scenario. Improved understanding and application of such models hold the key to more accurate risk evaluations in environmental impact assessments, thus facilitating the sustainable development of the tidal energy industry.


  • Open Access

    Cool runnings: behavioural plasticity and the realised thermal niche of basking sharks

    by E. M. Johnston, J. D. R. Houghton, P. A. Mayo, G. K. F. Hatten, A. P. Klimley, P. J. Mensink

    Long-distance migrations by marine vertebrates are often triggered by pronounced environmental cues. For the endangered basking shark (Cetorhinus maximus), seasonal changes in water temperature are frequently proposed as a cue for aggregation within (and dispersal from) coastal hotspots. The inference is that such movements reflect year-round occupancy within a given thermal ‘envelope’. However, the marked variance in timing, direction and depth of dispersal movements hint at a more nuanced explanation for basking sharks. Here, using data from pop-off archival transmitters deployed on individuals in Irish waters, we explored whether autumnal decreases in water temperature triggered departure from coastal habitats and how depth and location shaped the sharks’ realised thermal environment over time. Temperature was not an apparent driver of dispersal from coastal seas, and variance in daily temperature ranges reflected occupancy of different habitats; coastal mixed/stratified and offshore subtropical/tropical waters. Furthermore, individuals that moved offshore and into more southern latitudes off Africa, exhibited a distinct daily cycle of deep dives (00:00–12:00, 200 m–700 m; 12:00–00:00, 0–300 m), experiencing a more extreme range of temperatures (6.8–27.4 °C), including cooler minimum temperatures, than those remaining in European coastal habitat (9.2–17.6 °C). Collectively, these findings challenge the supposition that temperature serves as a universal driver of seasonal dispersal from coastal seas and prompts further studies of deep-water forays in offshore areas.


  • Open Access

    The Use of Animal-Borne Biologging and Telemetry Data to Quantify Spatial Overlap of Wildlife with Marine Renewables

    by Natalie Isaksson, Ian R. Cleasby, Ellie Owen, Benjamin J. Williamson, Jonathan D. R. Houghton, Jared Wilson, Elizabeth A. Masden

    The growth of the marine renewable energy sector requires the potential effects on marine wildlife to be considered carefully. For this purpose, utilization distributions derived from animal-borne biologging and telemetry data provide accurate information on individual space use. The degree of spatial overlap between potentially vulnerable wildlife such as seabirds and development areas can subsequently be quantified and incorporated into impact assessments and siting decisions. While rich in information, processing and analyses of animal-borne tracking data are often not trivial. There is therefore a need for straightforward and reproducible workflows for this technique to be useful to marine renewables stakeholders. The aim of this study was to develop an analysis workflow to extract utilization distributions from animal-borne biologging and telemetry data explicitly for use in assessment of animal spatial overlap with marine renewable energy development areas. We applied the method to European shags (Phalacrocorax aristotelis) in relation to tidal stream turbines. While shag occurrence in the tidal development area was high (99.4%), there was no overlap (0.14%) with the smaller tidal lease sites within the development area. The method can be applied to any animal-borne bio-tracking datasets and is relevant to stakeholders aiming to quantify environmental effects of marine renewables.


  • Optimising the application of 5-methoxy-2-methyl-indole to induce strobilation in moon jellyfish polyps

    by Kylie A. Pitt, Emily F. Hourahane, Ashley Johnston, Kai I. Pacey, Jonathan D. R. Houghton


  • Open Access

    Serendipitous re‐sighting of a basking shark Cetorhinus maximus reveals inter‐annual connectivity between American and European coastal hotspots

    by Emmett M. Johnston, Paul A. Mayo, Paul J. Mensink, Eric Savetsky, Jonathan D. R. Houghton

    A female basking shark Cetorhinus maximus was tagged with a satellite transmitter at Malin head, Ireland and re‐sighted 993 days later at Cape Cod, USA, a distance of 4632 km. Transatlantic stock mixing in basking sharks is supported by low genetic diversity in populations throughout the Atlantic Ocean but this is the only record to date of transatlantic movement by basking shark despite significant focus on the species' movements; > 1500 individual sharks tagged conventionally and > 150 individuals with remote tracking tags.


  • Open Access

    Unravelling the macro-evolutionary ecology of fish–jellyfish associations: life in the ‘gingerbread house’

    by Donal C. Griffin, Chris Harrod, Jonathan D. R. Houghton, Isabella Capellini

    Fish–jellyfish interactions are important factors contributing to fish stock success. Jellyfish can compete with fish for food resources, or feed on fish eggs and larvae, which works to reduce survivorship and recruitment of fish species. However, jellyfish also provide habitat and space for developing larval and juvenile fish which use their hosts as means of protection from predators and feeding opportunities, helping to reduce fish mortality and increase recruitment. Yet, relatively little is known about the evolutionary dynamics and drivers of such associations which would allow for their more effective incorporation into ecosystem models. Here, we found that jellyfish association is a probable adaptive anti-predator strategy for juvenile fish, more likely to evolve in benthic (fish living on the sea floor), benthopelagic (fish living just above the bottom of the seafloor), and reef-associating species than those adapted to other marine habitats. We also found that jellyfish association likely preceded the evolution of a benthic, benthopelagic, and reef-associating lifestyle rather than its evolutionary consequence, as we originally hypothesized. Considering over two-thirds of the associating fish identified here are of economic importance, and the wide-scale occurrence and diversity of species involved, it is clear the formation of fish–jellyfish associations is an important but complex process in relation to the success of fish stocks globally.


  • Open Access

    Latent power of basking sharks revealed by exceptional breaching events

    by Emmett M. Johnston, Lewis G. Halsey, Nicholas L. Payne, Alison A. Kock, Gil Iosilevskii, Bren Whelan, Jonathan D. R. Houghton

    The fast swimming and associated breaching behaviour of endothermic mackerel sharks is well suited to the capture of agile prey. In contrast, the observed but rarely documented breaching capability of basking sharks is incongruous to their famously languid lifestyle as filter-feeding planktivores. Indeed, by analysing video footage and an animal-instrumented data logger, we found that basking sharks exhibit the same vertical velocity (approx. 5 m s−1) during breach events as the famously powerful predatory great white shark. We estimate that an 8-m, 2700-kg basking shark, recorded breaching at 5 m s−1and accelerating at 0.4 m s−2, expended mechanical energy at a rate of 5.5 W kg−1; a mass-specific energetic cost comparable to that of the great white shark. The energy cost of such a breach is equivalent to around 1/17th of the daily standard metabolic cost for a basking shark, while the ratio is about half this for a great white shark. While breaches by basking sharks must serve a different function to white shark breaches, their similar breaching speeds questions our perception of the physiology of large filter-feeding fish.