Rephael Wenger
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Research Interests
Rephael Wenger has a total of 31 co-authors. Here are the top co-authors by number of shared publications:
- Jacob E. Goodman
City University of New York
3 shared publications - Richard Pollack
New York University
3 shared publications - Boris Aronov
Department of Computer Science and Engineering, Tandon School of Engineering, New York University, Brooklyn, USA
2 shared publications - Tudor Zamfirescu
University of Dortmund
2 shared publications - Boris Krichel
Department of Cell and Regenerative Biology, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI 53705, USA
1 shared publication - Bridget Ann Knight
University of Exeter
1 shared publication
Latest Publications
- Open Access
- 1 June 2023
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 39 (6)
MASH Native: a unified solution for native top-down proteomics data processing
Motivation: Native top-down proteomics (nTDP) integrates native mass spectrometry (nMS) with top-down proteomics (TDP) to provide comprehensive analysis of protein complexes together with proteoform identification and characterization. Despite significant advances in nMS and TDP software developments, a unified and user-friendly software package for analysis of nTDP data remains lacking. Results: We have developed MASH Native to provide a unified solution for nTDP to process complex datasets with database searching capabilities in a user-friendly interface. MASH Native supports various data formats and incorporates multiple options for deconvolution, database searching, and spectral summing to provide a “one-stop shop” for characterizing both native protein complexes and proteoforms. Availability and implementation: The MASH Native app, video tutorials, written tutorials, and additional documentation are freely available for download at https://labs.wisc.edu/gelab/MASH_Explorer/MASHSoftware.php. All data files shown in user tutorials are included with the MASH Native software in the download .zip file.
- 1 June 2023
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 39 (6)
Open AccessMASH Native: a unified solution for native top-down proteomics data processing
Motivation: Native top-down proteomics (nTDP) integrates native mass spectrometry (nMS) with top-down proteomics (TDP) to provide comprehensive analysis of protein complexes together with proteoform identification and characterization. Despite significant advances in nMS and TDP software developments, a unified and user-friendly software package for analysis of nTDP data remains lacking. Results: We have developed MASH Native to provide a unified solution for nTDP to process complex datasets with database searching capabilities in a user-friendly interface. MASH Native supports various data formats and incorporates multiple options for deconvolution, database searching, and spectral summing to provide a “one-stop shop” for characterizing both native protein complexes and proteoforms. Availability and implementation: The MASH Native app, video tutorials, written tutorials, and additional documentation are freely available for download at https://labs.wisc.edu/gelab/MASH_Explorer/MASHSoftware.php. All data files shown in user tutorials are included with the MASH Native software in the download .zip file.
- 1 December 2001
- Published by Springer Nature in Graphs and Combinatorics
- Vol. 17 (4) , 717-728
Embedding Planar Graphs at Fixed Vertex Locations
- 1 December 2001
- Published by Springer Nature in Graphs and Combinatorics
- Vol. 17 (4) , 717-728
Embedding Planar Graphs at Fixed Vertex Locations
- 4 April 2001
- Published by Springer Nature in Discrete & Computational Geometry
- Vol. 25 (4) , 507-517
A Helly-Type Theorem for Hyperplane Transversals to Well-Separated Convex Sets
- 4 April 2001
- Published by Springer Nature in Discrete & Computational Geometry
- Vol. 25 (4) , 507-517
A Helly-Type Theorem for Hyperplane Transversals to Well-Separated Convex Sets
- 1 September 2000
- Published by Springer Nature in Discrete & Computational Geometry
- Vol. 24 (2) , 171-176
On the Helly Number for Hyperplane Transversals to Unit Balls
- 1 September 2000
- Published by Springer Nature in Discrete & Computational Geometry
- Vol. 24 (2) , 171-176
On the Helly Number for Hyperplane Transversals to Unit Balls
- 1 January 1997
- Published by Springer Nature
- p. 315-329
Optimal reordering and mapping of a class of nested-loops for parallel execution
- 1 January 1997
- Published by Springer Nature
- p. 315-329
Optimal reordering and mapping of a class of nested-loops for parallel execution
- 1 November 1994
- Published by Taylor & Francis in The American Mathematical Monthly
- Vol. 101 (9) , 866
Arrangements and Topological Planes
- 1 November 1994
- Published by Taylor & Francis in The American Mathematical Monthly
- Vol. 101 (9) , 866
Arrangements and Topological Planes
- 1 November 1994
- Published by Taylor & Francis in The American Mathematical Monthly
- Vol. 101 (9) , 866-878
Arrangements and Topological Planes
(1994). Arrangements and Topological Planes. The American Mathematical Monthly: Vol. 101, No. 9, pp. 866-878.
- 1 November 1994
- Published by Taylor & Francis in The American Mathematical Monthly
- Vol. 101 (9) , 866-878
Arrangements and Topological Planes
(1994). Arrangements and Topological Planes. The American Mathematical Monthly: Vol. 101, No. 9, pp. 866-878.
- 1 September 1994
- Published by Springer Nature in Combinatorica
- Vol. 14 (3) , 301-306
Every arrangement extends to a spread
- 1 September 1994
- Published by Springer Nature in Combinatorica
- Vol. 14 (3) , 301-306
Every arrangement extends to a spread