Brent R. Johnson
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Brent R. Johnson has a total of 59 co-authors. Here are the top co-authors by number of shared publications:
- Ken M. Fritz
Office of Research and Development, United States Environmental Protection Agency, Cincinnati, USA
4 shared publications - Christopher T. Nietch
United States Environmental Protection Agency, Office of Research and Development, Cincinnati, OH, USA
3 shared publications - Betty J. Kreakie
Office of Research and Development, U.S. Environmental Protection Agency, Narragansett, US
2 shared publications - Blake A. Schaeffer
U.S. Environmental Protection Agency
2 shared publications - David M. Walters
Columbia Environmental Research Center
2 shared publications - Hannah Ferriby
Tetra Tech Inc., Durham, US
2 shared publications
Latest Publications
- 11 March 2026
- Published by Springer Nature in Hydrobiologia
- Vol. 853 (13) , 3715-3737
Evaluating satellite and modeled lake surface water temperature across the contiguous United States
- 11 March 2026
- Published by Springer Nature in Hydrobiologia
- Vol. 853 (13) , 3715-3737
Evaluating satellite and modeled lake surface water temperature across the contiguous United States
- Open Access
Evaluating satellite and modeled lake surface water temperature across the contiguous United States.
We developed a model to predict surface water temperature across U.S. lakes using satellite remote sensing and in situ observations to enhance cyanobacterial harmful algal bloom (cyanoHAB) forecasting. The study focused on Sentinel-3 Ocean and Land Colour Instrument (OLCI) sensor resolved lakes. We developed random forest models using both Landsat-derived and in-situ-measured surface water temperature. Landsat models offered broad spatial and temporal coverage of all OLCI resolved lakes, but they were sensitive to cloud cover and required filtering to minimize error. In contrast, the in situ model represented fewer OLCI resolved lakes, but yielded lower mean absolute error and bias. The models predicted lake surface temperature across the entire calendar year, with best performance (RMSEapplied=1.11; biasapplied=0.01; MAEapplied=0.77) from the in situ model. This approach allowed for the continuous prediction of lake surface temperatures from 1.1 to 31.6 °C for unfrozen, open‑water conditions critical for improving the accuracy of cyanoHAB forecasting. A key strength of this study was the use of an extensive dataset and model validation against in situ observations, which improved predictive accuracy throughout the year across all seasons. The predictive model offers a water resource tool for management, ecosystem protection, and public health.
Open AccessEvaluating satellite and modeled lake surface water temperature across the contiguous United States.
We developed a model to predict surface water temperature across U.S. lakes using satellite remote sensing and in situ observations to enhance cyanobacterial harmful algal bloom (cyanoHAB) forecasting. The study focused on Sentinel-3 Ocean and Land Colour Instrument (OLCI) sensor resolved lakes. We developed random forest models using both Landsat-derived and in-situ-measured surface water temperature. Landsat models offered broad spatial and temporal coverage of all OLCI resolved lakes, but they were sensitive to cloud cover and required filtering to minimize error. In contrast, the in situ model represented fewer OLCI resolved lakes, but yielded lower mean absolute error and bias. The models predicted lake surface temperature across the entire calendar year, with best performance (RMSEapplied=1.11; biasapplied=0.01; MAEapplied=0.77) from the in situ model. This approach allowed for the continuous prediction of lake surface temperatures from 1.1 to 31.6 °C for unfrozen, open‑water conditions critical for improving the accuracy of cyanoHAB forecasting. A key strength of this study was the use of an extensive dataset and model validation against in situ observations, which improved predictive accuracy throughout the year across all seasons. The predictive model offers a water resource tool for management, ecosystem protection, and public health.
- 1 September 2023
- Published by University of Chicago Press in Freshwater Science
- Vol. 42 (3) , 247-267
Identifying invertebrate indicators for streamflow duration assessments in forested headwater streams
Streamflow-duration assessment methods (SDAMs) are rapid, indicator-based tools for classifying streamflow duration (e.g., intermittent vs perennial flow) at the reach scale. Indicators are easily ...
- 1 September 2023
- Published by University of Chicago Press in Freshwater Science
- Vol. 42 (3) , 247-267
Identifying invertebrate indicators for streamflow duration assessments in forested headwater streams
Streamflow-duration assessment methods (SDAMs) are rapid, indicator-based tools for classifying streamflow duration (e.g., intermittent vs perennial flow) at the reach scale. Indicators are easily ...
- Open Access
Using Single-Species and Whole Community Stream Mesocosm Exposures for Identifying Major Ion Effects in Doses Mimicking Resource Extraction Wastewaters
Wastewaters and leachates from various inland resource extraction activities contain high ionic concentrations and differ in ionic composition, which complicates the understanding and effective management of their relative risks to stream ecosystems. To this end, we conducted a stream mesocosm dose–response experiment using two dosing recipes prepared from industrial salts. One recipe was designed to generally reflect the major ion composition of deep well brines (DWB) produced from gas wells (primarily Na+, Ca2+, and Cl−) and the other, the major ion composition of mountaintop mining (MTM) leachates from coal extraction operations (using salts dissociating to Ca2+, Mg2+, Na+, SO42− and HCO3−)—both sources being extensive in the Central Appalachians of the USA. The recipes were dosed at environmentally relevant nominal concentrations of total dissolved solids (TDS) spanning 100 to 2000 mg/L for 43 d under continuous flow-through conditions. The colonizing native algal periphyton and benthic invertebrates comprising the mesocosm ecology were assessed with response sensitivity distributions (RSDs) and hazard concentrations (HCs) at the taxa, community (as assemblages), and system (as primary and secondary production) levels. Single-species toxicity tests were run with the same recipes. Dosing the MTM recipe resulted in a significant loss of secondary production and invertebrate taxa assemblages that diverged from the control at all concentrations tested. Comparatively, intermediate doses of the DWB recipe had little consequence or increased secondary production (for emergence only) and had assemblages less different from the control. Only the highest dose of the DWB recipe had a negative impact on certain ecologies. The MTM recipe appeared more toxic, but overall, for both types of resource extraction wastewaters, the mesocosm responses suggested significant changes in stream ecology would not be expected for specific conductivity below 300 µS/cm, a published aquatic life benchmark suggested for the region.
Open AccessUsing Single-Species and Whole Community Stream Mesocosm Exposures for Identifying Major Ion Effects in Doses Mimicking Resource Extraction Wastewaters
Wastewaters and leachates from various inland resource extraction activities contain high ionic concentrations and differ in ionic composition, which complicates the understanding and effective management of their relative risks to stream ecosystems. To this end, we conducted a stream mesocosm dose–response experiment using two dosing recipes prepared from industrial salts. One recipe was designed to generally reflect the major ion composition of deep well brines (DWB) produced from gas wells (primarily Na+, Ca2+, and Cl−) and the other, the major ion composition of mountaintop mining (MTM) leachates from coal extraction operations (using salts dissociating to Ca2+, Mg2+, Na+, SO42− and HCO3−)—both sources being extensive in the Central Appalachians of the USA. The recipes were dosed at environmentally relevant nominal concentrations of total dissolved solids (TDS) spanning 100 to 2000 mg/L for 43 d under continuous flow-through conditions. The colonizing native algal periphyton and benthic invertebrates comprising the mesocosm ecology were assessed with response sensitivity distributions (RSDs) and hazard concentrations (HCs) at the taxa, community (as assemblages), and system (as primary and secondary production) levels. Single-species toxicity tests were run with the same recipes. Dosing the MTM recipe resulted in a significant loss of secondary production and invertebrate taxa assemblages that diverged from the control at all concentrations tested. Comparatively, intermediate doses of the DWB recipe had little consequence or increased secondary production (for emergence only) and had assemblages less different from the control. Only the highest dose of the DWB recipe had a negative impact on certain ecologies. The MTM recipe appeared more toxic, but overall, for both types of resource extraction wastewaters, the mesocosm responses suggested significant changes in stream ecology would not be expected for specific conductivity below 300 µS/cm, a published aquatic life benchmark suggested for the region.
- Open Access
Developing Indicators of Nutrient Pollution in Streams Using 16S rRNA Gene Metabarcoding of Periphyton-Associated Bacteria
Indicators based on nutrient-biota relationships in streams can inform water quality restoration and protection programs. Bacterial assemblages could be particularly useful indicators of nutrient effects because they are species-rich, important contributors to ecosystem processes in streams, and responsive to rapidly changing conditions. Here, we sampled 25 streams weekly (12–14 times each) and used 16S rRNA gene metabarcoding of periphyton-associated bacteria to quantify the effects of total phosphorus (TP) and total nitrogen (TN). Threshold indicator taxa analysis identified assemblage-level changes and amplicon sequence variants (ASVs) that increased or decreased with increasing TP and TN concentrations (i.e., low P, high P, low N, and high N ASVs). Boosted regression trees confirmed that relative abundances of gene sequence reads for these four indicator groups were associated with nutrient concentrations. Gradient forest analysis complemented these results by using multiple predictors and random forest models for each ASV to identify portions of TP and TN gradients at which the greatest changes in assemblage structure occurred. Synthesized statistical results showed bacterial assemblage structure began changing at 24 µg TP/L with the greatest changes occurring from 110 to 195 µg/L. Changes in the bacterial assemblages associated with TN gradually occurred from 275 to 855 µg/L. Taxonomic and phylogenetic analyses showed that low nutrient ASVs were commonly Firmicutes, Verrucomicrobiota, Flavobacteriales, and Caulobacterales, Pseudomonadales, and Rhodobacterales of Proteobacteria, whereas other groups, such as Chitinophagales of Bacteroidota, and Burkholderiales, Rhizobiales, Sphingomonadales, and Steroidobacterales of Proteobacteria comprised the high nutrient ASVs. Overall, the responses of bacterial ASV indicators in this study highlight the utility of metabarcoding periphyton-associated bacteria for quantifying biotic responses to nutrient inputs in streams.
Open AccessDeveloping Indicators of Nutrient Pollution in Streams Using 16S rRNA Gene Metabarcoding of Periphyton-Associated Bacteria
Indicators based on nutrient-biota relationships in streams can inform water quality restoration and protection programs. Bacterial assemblages could be particularly useful indicators of nutrient effects because they are species-rich, important contributors to ecosystem processes in streams, and responsive to rapidly changing conditions. Here, we sampled 25 streams weekly (12–14 times each) and used 16S rRNA gene metabarcoding of periphyton-associated bacteria to quantify the effects of total phosphorus (TP) and total nitrogen (TN). Threshold indicator taxa analysis identified assemblage-level changes and amplicon sequence variants (ASVs) that increased or decreased with increasing TP and TN concentrations (i.e., low P, high P, low N, and high N ASVs). Boosted regression trees confirmed that relative abundances of gene sequence reads for these four indicator groups were associated with nutrient concentrations. Gradient forest analysis complemented these results by using multiple predictors and random forest models for each ASV to identify portions of TP and TN gradients at which the greatest changes in assemblage structure occurred. Synthesized statistical results showed bacterial assemblage structure began changing at 24 µg TP/L with the greatest changes occurring from 110 to 195 µg/L. Changes in the bacterial assemblages associated with TN gradually occurred from 275 to 855 µg/L. Taxonomic and phylogenetic analyses showed that low nutrient ASVs were commonly Firmicutes, Verrucomicrobiota, Flavobacteriales, and Caulobacterales, Pseudomonadales, and Rhodobacterales of Proteobacteria, whereas other groups, such as Chitinophagales of Bacteroidota, and Burkholderiales, Rhizobiales, Sphingomonadales, and Steroidobacterales of Proteobacteria comprised the high nutrient ASVs. Overall, the responses of bacterial ASV indicators in this study highlight the utility of metabarcoding periphyton-associated bacteria for quantifying biotic responses to nutrient inputs in streams.
- 10 January 2019
- Published by Wiley in Jawra Journal of the American Water Resources Association
- Vol. 55 (1) , 247-258
Spatial Convergence in Major Dissolved Ion Concentrations and Implications of Headwater Mining for Downstream Water Quality
- 10 January 2019
- Published by Wiley in Jawra Journal of the American Water Resources Association
- Vol. 55 (1) , 247-258
Spatial Convergence in Major Dissolved Ion Concentrations and Implications of Headwater Mining for Downstream Water Quality
- 10 October 2014
- Published by Oxford University Press (OUP) in Environmental Toxicology and Chemistry
- Vol. 34 (1) , 167-172
Elevated major ion concentrations inhibit larval mayfly growth and development
Anthropogenic disturbances, including those from developing energy resources, can alter stream chemistry significantly by elevating total dissolved solids. Field studies have indicated that mayflies (Order Ephemeroptera) are particularly sensitive to high total dissolved solids. In the present study, the authors measured 20-d growth and survivorship of larval Neocloeon triangulifer exposed to a gradient of brine salt (mixed NaCl and CaCl2) concentrations. Daily growth rates were reduced significantly in all salt concentrations above the control (363 µS cm−1) and larvae in treatments with specific conductance >812 µS cm−1 were in comparatively earlier developmental stages (instars) at the end of the experiment. Survivorship declined significantly when specific conductance was >1513 µS cm−1 and the calculated 20-d 50% lethal concentration was 2866 µS cm−1. The present study's results provide strong experimental evidence that elevated ion concentrations similar to those observed in developing energy resources, such as oil and gas drilling or coal mining, can adversely affect sensitive aquatic insect species. Environ Toxicol Chem 2015;34:167–172. © 2014 SETAC
- 10 October 2014
- Published by Oxford University Press (OUP) in Environmental Toxicology and Chemistry
- Vol. 34 (1) , 167-172
Elevated major ion concentrations inhibit larval mayfly growth and development
Anthropogenic disturbances, including those from developing energy resources, can alter stream chemistry significantly by elevating total dissolved solids. Field studies have indicated that mayflies (Order Ephemeroptera) are particularly sensitive to high total dissolved solids. In the present study, the authors measured 20-d growth and survivorship of larval Neocloeon triangulifer exposed to a gradient of brine salt (mixed NaCl and CaCl2) concentrations. Daily growth rates were reduced significantly in all salt concentrations above the control (363 µS cm−1) and larvae in treatments with specific conductance >812 µS cm−1 were in comparatively earlier developmental stages (instars) at the end of the experiment. Survivorship declined significantly when specific conductance was >1513 µS cm−1 and the calculated 20-d 50% lethal concentration was 2866 µS cm−1. The present study's results provide strong experimental evidence that elevated ion concentrations similar to those observed in developing energy resources, such as oil and gas drilling or coal mining, can adversely affect sensitive aquatic insect species. Environ Toxicol Chem 2015;34:167–172. © 2014 SETAC
- 22 September 2010
- Published by American Geophysical Union (AGU) in Water Resources Research
- Vol. 46 (9)
Use of spatially explicit physicochemical data to measure downstream impacts of headwater stream disturbance
Regulatory agencies need methods to quantify the influence of headwater streams on downstream water quality as a result of litigation surrounding jurisdictional criteria and the influence of mountaintop removal coal mining activities. We collected comprehensive, spatially referenced physicochemical data (pH, dissolved oxygen, temperature, and specific conductance) from the partially mined Buckhorn Creek, KY, watershed in summer 2005 (n = 239 sites) and spring 2006 (n = 494 sites). We found conductivity was >10X higher in mined streams than in forested streams. Semivariograms, which quantify the degree of spatial dependence in chemistry values, indicated summer temperatures in both mined and unmined portions of the watershed had similar lag distances (approximately 5 km). Data for other parameters and seasons, however, violated model assumptions because of strong confluence effects in headwaters. We therefore developed a post hoc predictive model for water physicochemistry downstream of confluences using watershed areas as weighting factors. This weighted average model accurately predicted downstream conductivity (mean absolute error, MAE = 55.34 μS cm−1), pH (MAE = 0.16 units), and temperature (MAE = 0.41°C) for confluences in Buckhorn Creek and two additional watersheds with headwater disturbance in West Virginia and Ohio. Use of semivariograms or predictive confluence models can help regulatory agents identify downstream influence of headwater streams and presence of a “significant nexus” with downstream waters.
- 22 September 2010
- Published by American Geophysical Union (AGU) in Water Resources Research
- Vol. 46 (9)
Use of spatially explicit physicochemical data to measure downstream impacts of headwater stream disturbance
Regulatory agencies need methods to quantify the influence of headwater streams on downstream water quality as a result of litigation surrounding jurisdictional criteria and the influence of mountaintop removal coal mining activities. We collected comprehensive, spatially referenced physicochemical data (pH, dissolved oxygen, temperature, and specific conductance) from the partially mined Buckhorn Creek, KY, watershed in summer 2005 (n = 239 sites) and spring 2006 (n = 494 sites). We found conductivity was >10X higher in mined streams than in forested streams. Semivariograms, which quantify the degree of spatial dependence in chemistry values, indicated summer temperatures in both mined and unmined portions of the watershed had similar lag distances (approximately 5 km). Data for other parameters and seasons, however, violated model assumptions because of strong confluence effects in headwaters. We therefore developed a post hoc predictive model for water physicochemistry downstream of confluences using watershed areas as weighting factors. This weighted average model accurately predicted downstream conductivity (mean absolute error, MAE = 55.34 μS cm−1), pH (MAE = 0.16 units), and temperature (MAE = 0.41°C) for confluences in Buckhorn Creek and two additional watersheds with headwater disturbance in West Virginia and Ohio. Use of semivariograms or predictive confluence models can help regulatory agents identify downstream influence of headwater streams and presence of a “significant nexus” with downstream waters.
- 1 June 2010
- Published by University of Chicago Press in Journal of the North American Benthological Society
- Vol. 29 (2) , 673-689
Structural and functional characteristics of natural and constructed channels draining a reclaimed mountaintop removal and valley fill coal mine
Mountaintop removal and valley fill (MTR/VF) coal mining has altered the landscape of the Central Appalachian region in the USA. Among the changes are large-scale topographic recontouring, burial of headwater streams, and degradation of downstream water quality. The goals of our study were to: 1) compare the structure and function of natural and constructed stream channels in forested and MTR/VF catchments across ephemeral, intermittent, and perennial flow regimes and 2) assess the relationship between leaf litter breakdown and structural measures, such as the habitat assessments currently used by regulatory agencies. Specific conductance of stream water was, on average, 36 to 57× higher at perennial reaches below valley fills than at perennial reaches in forested catchments, whereas pH was circumneutral in both catchment types. Channel habitat and invertebrate assemblages in litter bags differed between forested streams and constructed channels in VF catchments. Invertebrate density, diversity, a...
- 1 June 2010
- Published by University of Chicago Press in Journal of the North American Benthological Society
- Vol. 29 (2) , 673-689
Structural and functional characteristics of natural and constructed channels draining a reclaimed mountaintop removal and valley fill coal mine
Mountaintop removal and valley fill (MTR/VF) coal mining has altered the landscape of the Central Appalachian region in the USA. Among the changes are large-scale topographic recontouring, burial of headwater streams, and degradation of downstream water quality. The goals of our study were to: 1) compare the structure and function of natural and constructed stream channels in forested and MTR/VF catchments across ephemeral, intermittent, and perennial flow regimes and 2) assess the relationship between leaf litter breakdown and structural measures, such as the habitat assessments currently used by regulatory agencies. Specific conductance of stream water was, on average, 36 to 57× higher at perennial reaches below valley fills than at perennial reaches in forested catchments, whereas pH was circumneutral in both catchment types. Channel habitat and invertebrate assemblages in litter bags differed between forested streams and constructed channels in VF catchments. Invertebrate density, diversity, a...