Roberto Danovaro

Exoenzymatic activities (aminopeptidase and b-glucosidase) and organic matter composition were investigated in June 1996 and February 1997 in the sediment of two areas of the Adriatic Sea differently influenced by the Po river. Protein, carbohydrate, and lipid concentrations were comparable to those reported in most productive systems. Sediment chlorophyll a and biopolymeric carbon concentrations in June were twice as high as in February, but highest exoenzymatic activities and organic matter turnover rates were observed in February (with aminopeptidase activities 10 times higher than in June). The accumulation of organic matter and lower protein and carbohydrate turnover rates observed in June were the result of a different biochemical composition of organic matter in the two sampling periods. In June, organic matter was characterized by a more refractory composition. The consequent reduction of available organic substrate was associated with a decrease in the exoenzymatic substrate affinity. Lower organic matter turnover rates were also observed in deeper sediment layers. In February, the freshwater plume was almost completely confined to the northern area, whereas in June it was extended to the southern area. The results suggest that river inputs influence the biochemical composition and distribution of the sediment organic matter and exoenzymatic activities in coastal marine sediments.

The interactions between viral abundance and bacterial density, biomass, and production were investigated along a longitudinal transect consisting of nine deep-sea stations encompassing the entire Mediterranean basin. The numbers of viruses were very low (range, 3.6 × 10 ⁷ to 12.0 × 10 ⁷ viruses g ⁻¹ ) and decreased eastward. The virus-to-bacterium ratio was always < 1.0, indicating that the deep-sea sediments of the Mediterranean Sea are the first example of a marine ecosystem not numerically dominated by viruses. The lowest virus numbers were found where the lowest bacterial metabolism and turnover rates and the largest cell size were observed, suggesting that bacterial doubling time might play an important role in benthic virus development.

In this study, we optimized procedures to enumerate viruses from marine sediments by epifluorescence microscopy using SYBR Green I as a stain. The highest virus yields from the bulk of the sediments were obtained by utilizing pyrophosphate and 3 min of sonication. The efficiency of extraction benthic viruses by pyrophosphate-ultrasound treatment was about 60% of the extractable virus particles. Samples treated with nucleases had increased virus counts, suggesting a masking effect of extracellular DNA. No significant differences were observed between virus counts obtained by epifluorescence microscopy and transmission electron microscopy. Both formaldehyde and glutaraldehyde gave significant reductions of virus counts after only 24 h of sediment storage, but no further loss occurred after 7 days.

To study the impact of organic enrichment and high biodeposition caused by intensive fish farming in coastal sediments, meiofaunal samples were colle