Xiao‐Yang Zhu
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Research Interests
Xiao‐Yang Zhu has a total of 37 co-authors. Here are the top co-authors by number of shared publications:
Athena Guo
MicroSurfaces, Minneapolis, MN, USA
4 shared publications- Gregory Dutton
National Institute of Standards and Technology, 100 Bureau Dr., Gaithersburg, Maryland 20899, United States
3 shared publications C. D. Lindstrom
Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA
2 shared publications- Donald G. Truhlar
Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota
2 shared publications T. Vondrak
Department of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA
2 shared publicationsTaeWoon Cha
Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA
2 shared publications
Latest Publications
- 11 April 2008
- Published by Springer Nature in Tribology Letters
- Vol. 30 (3) , 205-213
Friction, Wear, and Aging of an Alkoxy-monolayer Boundary Lubricant on Silicon
- 11 April 2008
- Published by Springer Nature in Tribology Letters
- Vol. 30 (3) , 205-213
Friction, Wear, and Aging of an Alkoxy-monolayer Boundary Lubricant on Silicon
- 14 June 2007
- Published by American Physical Society (APS) in Physical Review Letters
- Vol. 98 (24) , 246801
Formation of Two-Dimensional Polarons that are Absent in Three-Dimensional Crystals
We report the direct time domain observation of a many-body process in a two-dimensional system: small polaron formation from the localization of a conduction band electron in NaCl thin films of unit cell thickness. Contrary to theoretical prediction for bulk NaCl crystal where an electron polaron does not exist, time-resolved two-photon photoemission reveals small polaron formation from delocalized conduction band electrons in crystalline NaCl thin films. The increased deformability and the reduced electronic bandwidth of a crystalline lattice in the thin film format are both responsible for the formation of small polarons that are absent in bulk solids.
- 14 June 2007
- Published by American Physical Society (APS) in Physical Review Letters
- Vol. 98 (24) , 246801
Formation of Two-Dimensional Polarons that are Absent in Three-Dimensional Crystals
We report the direct time domain observation of a many-body process in a two-dimensional system: small polaron formation from the localization of a conduction band electron in NaCl thin films of unit cell thickness. Contrary to theoretical prediction for bulk NaCl crystal where an electron polaron does not exist, time-resolved two-photon photoemission reveals small polaron formation from delocalized conduction band electrons in crystalline NaCl thin films. The increased deformability and the reduced electronic bandwidth of a crystalline lattice in the thin film format are both responsible for the formation of small polarons that are absent in bulk solids.
- 22 May 2007
- Published by Wiley in Proteomics
- Vol. 7 (11) , 1771-1774
Denaturing and refolding of protein molecules on surfaces
Keeping protein molecules in the active state on a solid surface is essential to protein microarrays and other protein‐based biosensors. Here, we show that the 2‐D chemical environment controls the refolding of the denatured green fluorescent proteins tethered to solid surfaces. Refolding occurs readily on the repulsive PEG functionalized surface but is inhibited on the attractive –NH2 functionalized surface. This result shows the critical importance of the 2‐D chemical environment in the maintenance and revival of protein activity on surfaces and opens the door to designing 2‐D molecular chaperones for protein folding.
- 22 May 2007
- Published by Wiley in Proteomics
- Vol. 7 (11) , 1771-1774
Denaturing and refolding of protein molecules on surfaces
Keeping protein molecules in the active state on a solid surface is essential to protein microarrays and other protein‐based biosensors. Here, we show that the 2‐D chemical environment controls the refolding of the denatured green fluorescent proteins tethered to solid surfaces. Refolding occurs readily on the repulsive PEG functionalized surface but is inhibited on the attractive –NH2 functionalized surface. This result shows the critical importance of the 2‐D chemical environment in the maintenance and revival of protein activity on surfaces and opens the door to designing 2‐D molecular chaperones for protein folding.
- 11 December 2006
- Published by American Physical Society (APS) in Physical Review B
- Vol. 74 (24) , 241401
Molecular quantum well at theinterfaceA molecular quantum well is observed in epitaxial thin films of on Au(111). This quantum well is characterized by nearly free-electron-like dispersion in the surface plane and splitting of the electronic band with increasing number of overlayers. The experimental quantum well structure can be well described by tight binding theory with an intermolecular charge transfer integral of , corresponding to a full bandwidth of . Quantum mechanical calculation based on time-dependent density functional theory provides excellent agreement with this value. The molecular quantum well is populated by photoinduced electron transfer from the Au substrate and has a transient lifetime of .- 11 December 2006
- Published by American Physical Society (APS) in Physical Review B
- Vol. 74 (24) , 241401
Molecular quantum well at theinterfaceA molecular quantum well is observed in epitaxial thin films of on Au(111). This quantum well is characterized by nearly free-electron-like dispersion in the surface plane and splitting of the electronic band with increasing number of overlayers. The experimental quantum well structure can be well described by tight binding theory with an intermolecular charge transfer integral of , corresponding to a full bandwidth of . Quantum mechanical calculation based on time-dependent density functional theory provides excellent agreement with this value. The molecular quantum well is populated by photoinduced electron transfer from the Au substrate and has a transient lifetime of .- 1 February 2006
- Published by Elsevier in Biophysical Journal
- Vol. 90 (4) , 1270-1274
Formation of Supported Phospholipid Bilayers on Molecular Surfaces: Role of Surface Charge Density and Electrostatic Interaction
- 1 February 2006
- Published by Elsevier in Biophysical Journal
- Vol. 90 (4) , 1270-1274
Formation of Supported Phospholipid Bilayers on Molecular Surfaces: Role of Surface Charge Density and Electrostatic Interaction
- 18 July 2005
- Published by American Physical Society (APS) in Physical Review B
- Vol. 72 (4) , 045441
Exciton dynamics at molecule-metal interfaces:Time-resolved two-photon photoemission spectroscopy is used to probe the energetics and dynamics of electronically excited states in epitaxial films on a single-crystal Au(111) surface. These measurements reveal a rich variety of excited states corresponding to excitons in , charge transfer resonances at the metal-molecule interface, and image resonances on the surface. The lifetimes of excitons depend on the thickness of the film over a broad range; for the Frenkel exciton involving , the transient lifetime decreases from for film monolayers to at 2 monolayers. The long distance dependence is interpreted as due to the direct coupling between the electronic exciton band in and substrate metal bands.- 18 July 2005
- Published by American Physical Society (APS) in Physical Review B
- Vol. 72 (4) , 045441
Exciton dynamics at molecule-metal interfaces:Time-resolved two-photon photoemission spectroscopy is used to probe the energetics and dynamics of electronically excited states in epitaxial films on a single-crystal Au(111) surface. These measurements reveal a rich variety of excited states corresponding to excitons in , charge transfer resonances at the metal-molecule interface, and image resonances on the surface. The lifetimes of excitons depend on the thickness of the film over a broad range; for the Frenkel exciton involving , the transient lifetime decreases from for film monolayers to at 2 monolayers. The long distance dependence is interpreted as due to the direct coupling between the electronic exciton band in and substrate metal bands.- 8 February 2005
- Published by Wiley in Proteomics
- Vol. 5 (2) , 416-419
Enzymatic activity on a chip: The critical role of protein orientation
We compare the catalytic activities of enzymes immobilized on silicon surfaces with and without orientation. While oriented sulfotransferases selectively immobilized on an otherwise zero‐background surface via 6×His tags faithfully reflect activities of solution phase enzymes, those with random orientation on the surface do not. This finding demonstrates that controlling the orientation of immobilized protein molecules and designing an ideal local chemical environment on the solid surface are both essential if protein microarrays are to be used as quantitative tools in biomedical research.
- 8 February 2005
- Published by Wiley in Proteomics
- Vol. 5 (2) , 416-419
Enzymatic activity on a chip: The critical role of protein orientation
We compare the catalytic activities of enzymes immobilized on silicon surfaces with and without orientation. While oriented sulfotransferases selectively immobilized on an otherwise zero‐background surface via 6×His tags faithfully reflect activities of solution phase enzymes, those with random orientation on the surface do not. This finding demonstrates that controlling the orientation of immobilized protein molecules and designing an ideal local chemical environment on the solid surface are both essential if protein microarrays are to be used as quantitative tools in biomedical research.
- Open Access
- 24 August 2004
- Published by Wiley in Proteomics
- Vol. 4 (9) , 2823
Immobilization of oriented protein molecules on poly(ethylene glycol)-coated Si(111) (vol. 4, Issue 7, pp. 1965-1976)
- 24 August 2004
- Published by Wiley in Proteomics
- Vol. 4 (9) , 2823
Open AccessImmobilization of oriented protein molecules on poly(ethylene glycol)-coated Si(111) (vol. 4, Issue 7, pp. 1965-1976)
- 22 June 2004
- Published by Wiley in Proteomics
- Vol. 4 (7) , 1965-1976
Immobilization of oriented protein molecules on poly(ethylene glycol)‐coated Si(111)
A high‐density poly(ethylene glycol) (PEG)‐coated Si(111) surface is used for the immobilization of polyhistidine‐tagged protein molecules. This process features a number of properties that are highly desirable for protein microarray technology: (i) minimal nonspecific protein adsorption; (ii) highly uniform surface functionality; (iii) controlled protein orientation; and (iv) highly specific immobilization reaction without the need of protein purification. The high‐density PEG‐coated silicon surface is obtained from the reaction of a multi‐arm PEG (mPEG) molecule with a chlorine terminated Si(111) surface to give a mPEG film with thickness of 5.2 nm. Four out of the eight arms on each immobilized mPEG molecule are accessible for linking to the chelating iminodiacetic acid (IDA) groups for the binding of Cu 2+ ions. The resulting Cu 2+ ‐IDA‐mPEG‐Si(111) surface is shown to specifically bind 6x histidine‐tagged protein molecules, including green fluorescent protein (GFP) and sulfotransferase (ST), but otherwise retains its inertness towards nonspecific protein adsorption. We demonstrate a particular advantage of this strategy: the possibility of protein immobilization without the need of prepurification. Surface concentrations of relevant chemical species are quantitatively characterized at each reaction step by X‐ray photoelectron spectroscopy (XPS). This kind of quantitative analysis is essential in tuning surface concentration and chemical environment for optimal sensitivity in probe‐target interaction.
- 22 June 2004
- Published by Wiley in Proteomics
- Vol. 4 (7) , 1965-1976
Immobilization of oriented protein molecules on poly(ethylene glycol)‐coated Si(111)
A high‐density poly(ethylene glycol) (PEG)‐coated Si(111) surface is used for the immobilization of polyhistidine‐tagged protein molecules. This process features a number of properties that are highly desirable for protein microarray technology: (i) minimal nonspecific protein adsorption; (ii) highly uniform surface functionality; (iii) controlled protein orientation; and (iv) highly specific immobilization reaction without the need of protein purification. The high‐density PEG‐coated silicon surface is obtained from the reaction of a multi‐arm PEG (mPEG) molecule with a chlorine terminated Si(111) surface to give a mPEG film with thickness of 5.2 nm. Four out of the eight arms on each immobilized mPEG molecule are accessible for linking to the chelating iminodiacetic acid (IDA) groups for the binding of Cu 2+ ions. The resulting Cu 2+ ‐IDA‐mPEG‐Si(111) surface is shown to specifically bind 6x histidine‐tagged protein molecules, including green fluorescent protein (GFP) and sulfotransferase (ST), but otherwise retains its inertness towards nonspecific protein adsorption. We demonstrate a particular advantage of this strategy: the possibility of protein immobilization without the need of prepurification. Surface concentrations of relevant chemical species are quantitatively characterized at each reaction step by X‐ray photoelectron spectroscopy (XPS). This kind of quantitative analysis is essential in tuning surface concentration and chemical environment for optimal sensitivity in probe‐target interaction.
- 1 May 2003
- Published by Springer Nature in Tribology Letters
- Vol. 14 (4) , 237-244
Tribological Properties of Alkoxyl Monolayers on Oxide Terminated Silicon
- 1 May 2003
- Published by Springer Nature in Tribology Letters
- Vol. 14 (4) , 237-244
Tribological Properties of Alkoxyl Monolayers on Oxide Terminated Silicon