John A. West
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
John A. West has a total of 74 co-authors. Here are the top co-authors by number of shared publications:
- Giuseppe C. Zuccarello
Victoria University of Wellington
20 shared publications Ulf Karsten
Institute of Biological Sciences, Applied Ecology & Phycology, University of Rostock, D-18059, Rostock, Germany
7 shared publications- Mitsunobu Kamiya
Graduate School of Marine Science and Technology Tokyo University of Marine Science and Technology Tokyo Japan
6 shared publications Susan Loiseaux de Goer
5 shared publicationsJoseph L. Scott
4 shared publicationsKathryn A. West
4 shared publications
Latest Publications
- Open Access
- 31 May 2021
- Published by MDPI AG in Marine Drugs
- Vol. 19 (6) , 321
Analysis of the Mycosporine-Like Amino Acid (MAA) Pattern of the Salt Marsh Red Alga Bostrychia scorpioides
This study presents the validation of a high-performance liquid chromatography diode array detector (HPLC-DAD) method for the determination of different mycosporine-like amino acids (MAAs) in the red alga Bostrychia scorpioides. The investigated MAAs, named bostrychines, have only been found in this specific species so far. The developed HPLC-DAD method was successfully applied for the quantification of the major MAAs in Bostrychia scorpioides extracts, collected from four different countries in Europe showing only minor differences between the investigated samples. In the past, several Bostrychia spp. have been reported to include cryptic species, and in some cases such as B. calliptera, B. simpliciuscula, and B. moritziana, the polyphyly was supported by differences in their MAA composition. The uniformity in the MAA composition of the investigated B. scorpioides samples is in agreement with the reported monophyly of this Bostrychia sp.
- 31 May 2021
- Published by MDPI AG in Marine Drugs
- Vol. 19 (6) , 321
Open AccessAnalysis of the Mycosporine-Like Amino Acid (MAA) Pattern of the Salt Marsh Red Alga Bostrychia scorpioides
This study presents the validation of a high-performance liquid chromatography diode array detector (HPLC-DAD) method for the determination of different mycosporine-like amino acids (MAAs) in the red alga Bostrychia scorpioides. The investigated MAAs, named bostrychines, have only been found in this specific species so far. The developed HPLC-DAD method was successfully applied for the quantification of the major MAAs in Bostrychia scorpioides extracts, collected from four different countries in Europe showing only minor differences between the investigated samples. In the past, several Bostrychia spp. have been reported to include cryptic species, and in some cases such as B. calliptera, B. simpliciuscula, and B. moritziana, the polyphyly was supported by differences in their MAA composition. The uniformity in the MAA composition of the investigated B. scorpioides samples is in agreement with the reported monophyly of this Bostrychia sp.
- Open Access
Chemotaxonomic Study of Bostrychia spp. (Ceramiales, Rhodophyta) Based on Their Mycosporine-Like Amino Acid Content
This study presents a chemotaxonomic investigation of the genus Bostrychia through the quantitation of the major mycosporine-like amino acids (MAAs). The presence of some cryptic species had been suggested in the B. moritziana/B. radicans complex and MAA-profiling in respective samples revealed different chemotypes within this species complex. Another possibly polyphyletic species is Bostrychia simpliciuscula; previous molecular phylogenetic analyses showed four genetic lineages within this species, one of which was recently distinguished as a new species. Phytochemical profiling of those samples used for DNA analyses revealed four different chemotypes, corresponding to the above four lineages and it supports the re-circumscription of the other three B. simpliciuscula lineages. Therefore, mycosporine-like amino acids are considered as suitable chemotaxonomic markers for the reassessment of the classification of B. simpliciuscula. The determination of the MAA patterns in these algae was possible after developing and validating a suitable high-performance liquid chromatography–diode array detector (HPLC-DAD) method.
Open AccessChemotaxonomic Study of Bostrychia spp. (Ceramiales, Rhodophyta) Based on Their Mycosporine-Like Amino Acid Content
This study presents a chemotaxonomic investigation of the genus Bostrychia through the quantitation of the major mycosporine-like amino acids (MAAs). The presence of some cryptic species had been suggested in the B. moritziana/B. radicans complex and MAA-profiling in respective samples revealed different chemotypes within this species complex. Another possibly polyphyletic species is Bostrychia simpliciuscula; previous molecular phylogenetic analyses showed four genetic lineages within this species, one of which was recently distinguished as a new species. Phytochemical profiling of those samples used for DNA analyses revealed four different chemotypes, corresponding to the above four lineages and it supports the re-circumscription of the other three B. simpliciuscula lineages. Therefore, mycosporine-like amino acids are considered as suitable chemotaxonomic markers for the reassessment of the classification of B. simpliciuscula. The determination of the MAA patterns in these algae was possible after developing and validating a suitable high-performance liquid chromatography–diode array detector (HPLC-DAD) method.
- Open Access
- 30 October 2019
- Published by Cold Spring Harbor Laboratory in bioRxiv
- p. 821579
Revisiting australianectocarpus subulatus(phaeophyceae) from the hopkins river: distribution, abiotic environment, and associated microbiota
Ectocarpusis a genus of common marine brown algae. In 1995 a strain ofEctocarpuswas isolated from Hopkins River Falls, Victoria, Australia, constituting one of few available freshwater or nearly freshwater brown algae, and the only one belonging toEctocarpus. It has since been used as a model to study acclimation and adaptation to low salinities and the role of its microbiota in these processes. However, little is known about the distribution of this strain or whether it represents a stable population. Furthermore, its microbiota may have been impacted by the long period of cultivation.Twenty-two years after the original finding we searched forEctocarpusin the Hopkins River and surrounding areas. We found individuals with ITS andcox1 sequences identical to the original isolate at three sites upstream of Hopkins River Falls, but none at the original isolation site. The osmolarity of the water at these sites ranged from 74-170 mOsmol, and it was rich in sulfate. The diversity of bacteria associated with the algaein situwas approximately one order of magnitude higher than in previous studies of the original laboratory culture, and 95 alga-associated bacterial strains were isolated fromE. subulatusfilaments on site. In particular,Planctomyceteswere abundantin situbut rare in the laboratory-cultured strain.Our results confirm thatE. subulatushas stably colonized the Hopkins River, and the newly isolated algal and bacterial strains offer new possibilities to study the adaptation ofEctocarpusto low salinity and its interactions with its microbiome.
- 30 October 2019
- Published by Cold Spring Harbor Laboratory in bioRxiv
- p. 821579
Open AccessRevisiting australianectocarpus subulatus(phaeophyceae) from the hopkins river: distribution, abiotic environment, and associated microbiota
Ectocarpusis a genus of common marine brown algae. In 1995 a strain ofEctocarpuswas isolated from Hopkins River Falls, Victoria, Australia, constituting one of few available freshwater or nearly freshwater brown algae, and the only one belonging toEctocarpus. It has since been used as a model to study acclimation and adaptation to low salinities and the role of its microbiota in these processes. However, little is known about the distribution of this strain or whether it represents a stable population. Furthermore, its microbiota may have been impacted by the long period of cultivation.Twenty-two years after the original finding we searched forEctocarpusin the Hopkins River and surrounding areas. We found individuals with ITS andcox1 sequences identical to the original isolate at three sites upstream of Hopkins River Falls, but none at the original isolation site. The osmolarity of the water at these sites ranged from 74-170 mOsmol, and it was rich in sulfate. The diversity of bacteria associated with the algaein situwas approximately one order of magnitude higher than in previous studies of the original laboratory culture, and 95 alga-associated bacterial strains were isolated fromE. subulatusfilaments on site. In particular,Planctomyceteswere abundantin situbut rare in the laboratory-cultured strain.Our results confirm thatE. subulatushas stably colonized the Hopkins River, and the newly isolated algal and bacterial strains offer new possibilities to study the adaptation ofEctocarpusto low salinity and its interactions with its microbiome.
- 12 March 2017
- Published by Wiley in Journal of Phycology
- Vol. 53 (3) , 522-540
Molecular phylogeny and taxonomic revision of the genus Wittrockiella (Pithophoraceae, Cladophorales), including the descriptions of W. australis sp. nov. and W. zosterae sp. nov.
Wittrockiella is a small genus of filamentous green algae that occurs in habitats with reduced or fluctuating salinities. Many aspects of the basic biology of these algae are still unknown and the phylogenetic relationships within the genus have not been fully explored. We provide a phylogeny based on three ribosomal markers (ITS, LSU, and SSU rDNA) of the genus, including broad intraspecific sampling for W. lyallii and W. salina, recommendations for the use of existing names are made, and highlight aspects of their physiology and life cycle. Molecular data indicate that there are five species of Wittrockiella. Two new species, W. australis and W. zosterae, are described, both are endophytes. Although W. lyallii and W. salina can be identified morphologically, there are no diagnostic morphological characters to distinguish between W. amphibia, W. australis, and W. zosterae. A range of low molecular weight carbohydrates were analyzed but proved to not be taxonomically informative. The distribution range of W. salina is extended to the Northern Hemisphere as this species has been found in brackish lakes in Japan. Furthermore, it is shown that there are no grounds to recognize W. salina var. kraftii, which was described as an endemic variety from a freshwater habitat on Lord Howe Island, Australia. Culture experiments indicate that W. australis has a preference for growth in lower salinities over full seawater. For W. amphibia and W. zosterae, sexual reproduction is documented, and the split of these species is possibly attributable to polyploidization.
- 12 March 2017
- Published by Wiley in Journal of Phycology
- Vol. 53 (3) , 522-540
Molecular phylogeny and taxonomic revision of the genus Wittrockiella (Pithophoraceae, Cladophorales), including the descriptions of W. australis sp. nov. and W. zosterae sp. nov.
Wittrockiella is a small genus of filamentous green algae that occurs in habitats with reduced or fluctuating salinities. Many aspects of the basic biology of these algae are still unknown and the phylogenetic relationships within the genus have not been fully explored. We provide a phylogeny based on three ribosomal markers (ITS, LSU, and SSU rDNA) of the genus, including broad intraspecific sampling for W. lyallii and W. salina, recommendations for the use of existing names are made, and highlight aspects of their physiology and life cycle. Molecular data indicate that there are five species of Wittrockiella. Two new species, W. australis and W. zosterae, are described, both are endophytes. Although W. lyallii and W. salina can be identified morphologically, there are no diagnostic morphological characters to distinguish between W. amphibia, W. australis, and W. zosterae. A range of low molecular weight carbohydrates were analyzed but proved to not be taxonomically informative. The distribution range of W. salina is extended to the Northern Hemisphere as this species has been found in brackish lakes in Japan. Furthermore, it is shown that there are no grounds to recognize W. salina var. kraftii, which was described as an endemic variety from a freshwater habitat on Lord Howe Island, Australia. Culture experiments indicate that W. australis has a preference for growth in lower salinities over full seawater. For W. amphibia and W. zosterae, sexual reproduction is documented, and the split of these species is possibly attributable to polyploidization.
- Open Access
- 15 December 2016
- Published by The Korean Society of Phycology in ALGAE
- Vol. 31 (4) , 289-301
Flora of drift plastics: a new red algal genus, Tsunamia transpacifica (Stylonematophyceae) from Japanese tsunami debris in the northeast Pacific Ocean
- 15 December 2016
- Published by The Korean Society of Phycology in ALGAE
- Vol. 31 (4) , 289-301
Open AccessFlora of drift plastics: a new red algal genus, Tsunamia transpacifica (Stylonematophyceae) from Japanese tsunami debris in the northeast Pacific Ocean
- 14 April 2016
- Published by Wiley in Journal of Phycology
- Vol. 52 (3) , 397-403
Rhodenigma contortum, an obscure new genus and species of Rhodogorgonales (Rhodophyta) from Western Australia
An unknown microscopic, branched filamentous red alga was isolated into culture from coral fragments collected in Coral Bay, Western Australia. It grew well unattached or attached to glass with no reproduction other than fragmentation of filaments. Cells of some branch tips became slightly contorted and digitated, possibly as a substrate‐contact‐response seen at filament tips of various algae. Attached multicellular compact disks on glass had a very different cellular configuration and size than the free filaments. In culture the filaments did not grow on or in coral fragments. Molecular phylogenies based on four markers (rbcL,cox1, 18S, 28S) clearly showed it belongs to the order Rhodogorgonales, as a sister clade ofRenouxia. Based on these results, the alga is described as the new genus and speciesRhodenigma contortumin the Rhodogorgonaceae. It had no morphological similarity to either of the other genera in Rhodogorgonaceae and illustrates the unknown diversity in cryptic habitats such as tropical coral rubble.
- 14 April 2016
- Published by Wiley in Journal of Phycology
- Vol. 52 (3) , 397-403
Rhodenigma contortum, an obscure new genus and species of Rhodogorgonales (Rhodophyta) from Western Australia
An unknown microscopic, branched filamentous red alga was isolated into culture from coral fragments collected in Coral Bay, Western Australia. It grew well unattached or attached to glass with no reproduction other than fragmentation of filaments. Cells of some branch tips became slightly contorted and digitated, possibly as a substrate‐contact‐response seen at filament tips of various algae. Attached multicellular compact disks on glass had a very different cellular configuration and size than the free filaments. In culture the filaments did not grow on or in coral fragments. Molecular phylogenies based on four markers (rbcL,cox1, 18S, 28S) clearly showed it belongs to the order Rhodogorgonales, as a sister clade ofRenouxia. Based on these results, the alga is described as the new genus and speciesRhodenigma contortumin the Rhodogorgonaceae. It had no morphological similarity to either of the other genera in Rhodogorgonaceae and illustrates the unknown diversity in cryptic habitats such as tropical coral rubble.
- 15 September 2015
- Published by The Korean Society of Phycology in ALGAE
- Vol. 30 (3) , 207-216
Caloglossa beccarii (Delesseriaceae, Rhodophyta) from freshwater rivers in Kerala, India, a critical new record
- 15 September 2015
- Published by The Korean Society of Phycology in ALGAE
- Vol. 30 (3) , 207-216
Caloglossa beccarii (Delesseriaceae, Rhodophyta) from freshwater rivers in Kerala, India, a critical new record
- Open Access
- 15 March 2015
- Published by The Korean Society of Phycology in ALGAE
- Vol. 30 (1) , 1-13
Lemanea manipurensis sp. nov. (Batrachospermales), a freshwater red algal species from North-East India
A new macroscopic riverine red algal species, Lemanea manipurensis sp. nov. (Batrachospermales) is described from Manipur in northeast India. It has a sparsely branched, pseudoparenchymatous thallus with a single, central axial filament that lacks cortical filaments. Spermatangia occur generally in isolated, low and indistinct patches or form an almost continuous ring around the axis. Carposporophytes project into the hollow thallus cavity without an ostiole. The most striking morphological feature is the carposporophyte with very short gonimoblast filaments having cylindrical, narrow and sparsely branched sterile filaments, the terminal cell of each branch with a single, large, elongate carpospore. The widely distributed L. fluviatilis has spherical carpospores in long branched chains. Phylogenetic analysis of rbcL sequence data and comparison with other Batrachospermales clearly show that our specimens do not align with other species of Lemanea and Paralemanea investigated thus far. Five specific names attributed in previous literature (1973-2014) to Lemanea from Manipur, L. australis, L. catenata, L. fluviatilis, L. mamillosa, and L. torulosa are rejected until critical anatomical and molecular evidence is available for specimens from the Manipur river systems. Taxa referable to Paralemanea were not confirmed for India in this study. In view of the high demand for food and medical uses of L. manipurensis in northeast India, conservation measures are needed for its long term survival. The present paper constitutes the first combined morphological / molecular study on a freshwater red alga from India.
- 15 March 2015
- Published by The Korean Society of Phycology in ALGAE
- Vol. 30 (1) , 1-13
Open AccessLemanea manipurensis sp. nov. (Batrachospermales), a freshwater red algal species from North-East India
A new macroscopic riverine red algal species, Lemanea manipurensis sp. nov. (Batrachospermales) is described from Manipur in northeast India. It has a sparsely branched, pseudoparenchymatous thallus with a single, central axial filament that lacks cortical filaments. Spermatangia occur generally in isolated, low and indistinct patches or form an almost continuous ring around the axis. Carposporophytes project into the hollow thallus cavity without an ostiole. The most striking morphological feature is the carposporophyte with very short gonimoblast filaments having cylindrical, narrow and sparsely branched sterile filaments, the terminal cell of each branch with a single, large, elongate carpospore. The widely distributed L. fluviatilis has spherical carpospores in long branched chains. Phylogenetic analysis of rbcL sequence data and comparison with other Batrachospermales clearly show that our specimens do not align with other species of Lemanea and Paralemanea investigated thus far. Five specific names attributed in previous literature (1973-2014) to Lemanea from Manipur, L. australis, L. catenata, L. fluviatilis, L. mamillosa, and L. torulosa are rejected until critical anatomical and molecular evidence is available for specimens from the Manipur river systems. Taxa referable to Paralemanea were not confirmed for India in this study. In view of the high demand for food and medical uses of L. manipurensis in northeast India, conservation measures are needed for its long term survival. The present paper constitutes the first combined morphological / molecular study on a freshwater red alga from India.
- 15 June 2014
- Published by The Korean Society of Phycology in ALGAE
- Vol. 29 (2) , 101-109
A new species of Bangiopsis: B. franklynottii sp. nov. (Stylonematophyceae, Rhodophyta) from Australia and India and comments on the genus
- 15 June 2014
- Published by The Korean Society of Phycology in ALGAE
- Vol. 29 (2) , 101-109
A new species of Bangiopsis: B. franklynottii sp. nov. (Stylonematophyceae, Rhodophyta) from Australia and India and comments on the genus
- 15 September 2013
- Published by The Korean Society of Phycology in ALGAE
- Vol. 28 (3) , 241-266
Observations on some mangrove-associated algae from the western Pacific (Guam, Chuuk, Kosrae, and Pohnpei)
- 15 September 2013
- Published by The Korean Society of Phycology in ALGAE
- Vol. 28 (3) , 241-266
Observations on some mangrove-associated algae from the western Pacific (Guam, Chuuk, Kosrae, and Pohnpei)