Pietro Larizza
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Pietro Larizza has a total of 21 co-authors. Here are the top co-authors by number of shared publications:
- Angelo Sparaneo
Laboratory of Oncology, Fondazione IRCCS Casa Sollievo della Sofferenza, 71013 San Giovanni Rotondo, Italy
1 shared publication - Anna Maria Lucia Lanzolla
Department of Electrical and Information Engineering, Polytechnic University of Bari, Via E. Orabona 4, 70125 Bari, Italy
1 shared publication - Antonio Bonfitto
Unit of Pathology, Fondazione IRCCS Casa Sollievo della Sofferenza, San Giovanni Rotondo, 71013 Foggia, Italy
1 shared publication - Daniel Filippini
Department of Physics, Chemistry and Biology (IFM), Linköping University, Linköping 58435 (Sweden)
1 shared publication - Daniela Pranzo
Masmec Biomed, Masmec S.p.A. Division, 70026 Modugno (Bari), Italy
1 shared publication - Domenico Trombetta
Laboratory of Oncology, Fondazione IRCCS Casa Sollievo della Sofferenza, 71013 San Giovanni Rotondo, FG, Italy
1 shared publication
Latest Publications
- Open Access
Automated Workflow for Somatic and Germline Next Generation Sequencing Analysis in Routine Clinical Cancer Diagnostics
Thanks to personalized medicine trends and collaborations between industry, clinical research groups and regulatory agencies, next generation sequencing (NGS) is turning into a common practice faster than one could have originally expected. When considering clinical applications of NGS in oncology, a rapid workflow for DNA extraction from formalin-fixed paraffin-embedded (FFPE) tissue samples, as well as producing high quality library preparation, can be real challenges. Here we consider these targets and how applying effective automation technology to NGS workflows may help improve yield, timing and quality-control. We firstly evaluated DNA recovery from archived FFPE blocks from three different manual extraction methods and two automated extraction workstations. The workflow was then implemented to somatic (lung/colon panel) and germline (BRCA1/2) library preparation for NGS analysis exploiting two automated workstations. All commercial kits gave good results in terms of DNA yield and quality. On the other hand, the automated workstation workflow has been proven to be a valid automatic extraction system to obtain high quality DNA suitable for NGS analysis (lung/colon Ampli-seq panel). Moreover, it can be efficiently integrated with an open liquid handling platform to provide high-quality libraries from germline DNA with more reproducibility and high coverage for targeted sequences in less time (BRCA1/2). The introduction of automation in routine workflow leads to an improvement of NGS standardization and increased scale up of sample preparations, reducing labor and timing, with optimization of reagents and management.
Open AccessAutomated Workflow for Somatic and Germline Next Generation Sequencing Analysis in Routine Clinical Cancer Diagnostics
Thanks to personalized medicine trends and collaborations between industry, clinical research groups and regulatory agencies, next generation sequencing (NGS) is turning into a common practice faster than one could have originally expected. When considering clinical applications of NGS in oncology, a rapid workflow for DNA extraction from formalin-fixed paraffin-embedded (FFPE) tissue samples, as well as producing high quality library preparation, can be real challenges. Here we consider these targets and how applying effective automation technology to NGS workflows may help improve yield, timing and quality-control. We firstly evaluated DNA recovery from archived FFPE blocks from three different manual extraction methods and two automated extraction workstations. The workflow was then implemented to somatic (lung/colon panel) and germline (BRCA1/2) library preparation for NGS analysis exploiting two automated workstations. All commercial kits gave good results in terms of DNA yield and quality. On the other hand, the automated workstation workflow has been proven to be a valid automatic extraction system to obtain high quality DNA suitable for NGS analysis (lung/colon Ampli-seq panel). Moreover, it can be efficiently integrated with an open liquid handling platform to provide high-quality libraries from germline DNA with more reproducibility and high coverage for targeted sequences in less time (BRCA1/2). The introduction of automation in routine workflow leads to an improvement of NGS standardization and increased scale up of sample preparations, reducing labor and timing, with optimization of reagents and management.
- Open Access
- 27 July 2018
- Published by MDPI AG in Micromachines
- Vol. 9 (8) , 374
Extrusion-Based 3D Printing of Microfluidic Devices for Chemical and Biomedical Applications: A Topical Review
One of the most widespread additive manufacturing (AM) technologies is fused deposition modelling (FDM), also known as fused filament fabrication (FFF) or extrusion-based AM. The main reasons for its success are low costs, very simple machine structure, and a wide variety of available materials. However, one of the main limitations of the process is its accuracy and finishing. In spite of this, FDM is finding more and more applications, including in the world of micro-components. In this world, one of the most interesting topics is represented by microfluidic reactors for chemical and biomedical applications. The present review focusses on this research topic from a process point of view, describing at first the platforms and materials and then deepening the most relevant applications.
- 27 July 2018
- Published by MDPI AG in Micromachines
- Vol. 9 (8) , 374
Open AccessExtrusion-Based 3D Printing of Microfluidic Devices for Chemical and Biomedical Applications: A Topical Review
One of the most widespread additive manufacturing (AM) technologies is fused deposition modelling (FDM), also known as fused filament fabrication (FFF) or extrusion-based AM. The main reasons for its success are low costs, very simple machine structure, and a wide variety of available materials. However, one of the main limitations of the process is its accuracy and finishing. In spite of this, FDM is finding more and more applications, including in the world of micro-components. In this world, one of the most interesting topics is represented by microfluidic reactors for chemical and biomedical applications. The present review focusses on this research topic from a process point of view, describing at first the platforms and materials and then deepening the most relevant applications.
- 1 May 2017
- Published by Institute of Electrical and Electronics Engineers (IEEE)
- p. 1-6
TDM-FDM configuration of electromagnetic tracking system for image-guided surgery devices
This paper proposes the analysis of different architectures for a novel electromagnetic system unit for Mini Invasive Surgery (MIS). Mini Invasive Surgery includes different techniques as Image Guided Surgery and Robotic Assisted Surgery, to track medical instruments and patient anatomy during percutaneous therapy or surgical operation. These techniques are characterized by a low bodily and psychological impact for patient in reduction of lesions on body, post-operation pain, risk of infection and reduction of the rehabilitation period. Moreover, they are a very useful tool for the surgeon which can work with high accurate technologies, also in difficult access anatomic areas, with a reduced risk of error and stress level.
- 1 May 2017
- Published by Institute of Electrical and Electronics Engineers (IEEE)
- p. 1-6
TDM-FDM configuration of electromagnetic tracking system for image-guided surgery devices
This paper proposes the analysis of different architectures for a novel electromagnetic system unit for Mini Invasive Surgery (MIS). Mini Invasive Surgery includes different techniques as Image Guided Surgery and Robotic Assisted Surgery, to track medical instruments and patient anatomy during percutaneous therapy or surgical operation. These techniques are characterized by a low bodily and psychological impact for patient in reduction of lesions on body, post-operation pain, risk of infection and reduction of the rehabilitation period. Moreover, they are a very useful tool for the surgeon which can work with high accurate technologies, also in difficult access anatomic areas, with a reduced risk of error and stress level.
- 5 June 2009
- Published by Springer Nature in The International Journal of Advanced Manufacturing Technology
- Vol. 47 (9-12) , 953-961
Model-based techniques for the testing and diagnosis of micro-manufacturing devices and machines
- 5 June 2009
- Published by Springer Nature in The International Journal of Advanced Manufacturing Technology
- Vol. 47 (9-12) , 953-961
Model-based techniques for the testing and diagnosis of micro-manufacturing devices and machines