Annette Flanagin
Research Subjects
Research Interests
Recognitions
Annette Flanagin has a total of 61 co-authors. Here are the top co-authors by number of shared publications:
Michael Berkwits
JAMA and The JAMA Network, Chicago, Illinois
8 shared publicationsKirsten Bibbins-Domingo
Editor in Chief, JAMA and The JAMA Network
7 shared publicationsStacy L. Christiansen
JAMA Network, Chicago, Illinois
5 shared publicationsFiona Godlee
The BMJ, London, England
4 shared publicationsTheodora Bloom
The BMJ, London, England
4 shared publicationsTracy Frey
Deputy Managing Editor, JAMA Network
4 shared publications
Latest Publications
- Open Access
- 5 November 2024
- Published by American Medical Association (AMA) in JAMA
- Vol. 332 (17) , 1434-1436
Tenth International Congress on Peer Review and Scientific Publication
In September 2023, we announced the 10th International Congress on Peer Review and Scientific Publication, to be held in Chicago, Illinois, on September
- 5 November 2024
- Published by American Medical Association (AMA) in JAMA
- Vol. 332 (17) , 1434-1436
Open AccessTenth International Congress on Peer Review and Scientific Publication
In September 2023, we announced the 10th International Congress on Peer Review and Scientific Publication, to be held in Chicago, Illinois, on September
- Open Access
- 27 August 2024
- Published by American Medical Association (AMA) in JAMA
- Vol. 332 (8) , e2416646
Draft Guidance on Reporting Gender, Sex, Gender Identity, Sexual Orientation, and Age in Medical and Scientific Publication—Call for Review and Comment
As we have previously acknowledged, terminology, usage, and word choice are critically important in medical and scientific publication, particularly when
- 27 August 2024
- Published by American Medical Association (AMA) in JAMA
- Vol. 332 (8) , e2416646
Open AccessDraft Guidance on Reporting Gender, Sex, Gender Identity, Sexual Orientation, and Age in Medical and Scientific Publication—Call for Review and Comment
As we have previously acknowledged, terminology, usage, and word choice are critically important in medical and scientific publication, particularly when
- Open Access
- 4 June 2024
- Published by American Medical Association (AMA) in JAMA
- Vol. 331 (21) , 1812-1813
What Does the Proposed Causal Inference Framework for Observational Studies Mean for JAMA and the JAMA Network Journals?
The Special Communication “Causal Inferences About the Effects of Interventions From Observational Studies in Medical Journals,” published in this issue
- 4 June 2024
- Published by American Medical Association (AMA) in JAMA
- Vol. 331 (21) , 1812-1813
Open AccessWhat Does the Proposed Causal Inference Framework for Observational Studies Mean for JAMA and the JAMA Network Journals?
The Special Communication “Causal Inferences About the Effects of Interventions From Observational Studies in Medical Journals,” published in this issue
- Top Cited PapersOpen Access
- 2 April 2024
- Published by American Medical Association (AMA) in JAMA
- Vol. 331 (13) , 1096-1098
Reporting Use of AI in Research and Scholarly Publication—JAMA Network Guidance
Reports on the use of artificial intelligence (AI) and machine learning, including large language models (LLM), in medical research have intensified in the last
- 2 April 2024
- Published by American Medical Association (AMA) in JAMA
- Vol. 331 (13) , 1096-1098
Top Cited PapersOpen AccessReporting Use of AI in Research and Scholarly Publication—JAMA Network Guidance
Reports on the use of artificial intelligence (AI) and machine learning, including large language models (LLM), in medical research have intensified in the last
- Top Cited PapersOpen Access
- 22 August 2023
- Published by American Medical Association (AMA) in JAMA
- Vol. 330 (8) , 702-703
Guidance for Authors, Peer Reviewers, and Editors on Use of AI, Language Models, and Chatbots
Following the rapidly evolving use of artificial intelligence (AI) tools such as large language models (LLMs) and generative chatbots, JAMA and the JAMA Network
- 22 August 2023
- Published by American Medical Association (AMA) in JAMA
- Vol. 330 (8) , 702-703
Top Cited PapersOpen AccessGuidance for Authors, Peer Reviewers, and Editors on Use of AI, Language Models, and Chatbots
Following the rapidly evolving use of artificial intelligence (AI) tools such as large language models (LLMs) and generative chatbots, JAMA and the JAMA Network
- 8 August 2023
- Published by American Medical Association (AMA) in JAMA
- Vol. 330 (6) , 566-567
Implications of Nonhuman “Authors”—Reply
In Reply We thank Mr Uzoigwe and Dr Matsui and colleagues for their thoughtful comments in response to our Editorial.1 Uzoigwe’s concerns about copyright of content generated by LLMs, neural networks, and similar AI tools have been widely discussed,2,3 are in active litigation,3 and have been considered by the US Copyright Office4 and the World Intellectual Property Organization.5 Most agencies and jurisdictions require a human author to create or substantially contribute to the creation of the content for copyright to apply,4,5 but there are ongoing discussions and often heated debates about the future of copyright and AI-generated content that go beyond legal interests, including concerns about ethics, plagiarism, and the displacement of jobs and elimination of creative professions. Companies that produce these tools have guidance regarding the reuse of generated content, but these may not be well understood by users. In addition, there is confusion about what defines “derivative” content and how “fair use” (which allows reuse of a small amount of text or graphic material for criticism, comment, news reporting, teaching, scholarship, or research)6 may or may not apply in the context of AI-generated content. To date, the US Copyright Office has denied copyright application for AI-generated work and also determined that a human-authored graphic novel combined with AI-generated images was copyrightable, but that the individual images could not be protected by copyright.4 The office has “launched an agency-wide initiative to delve into a wide range of these issues,” including public hearings.4 Hence, there is much uncertainty regarding rights to reuse AI-generated content in scholarly publication. We advise authors to respect the rights and licensing terms of any original content, to check the terms and conditions for reuse of any generated content, to be completely transparent about the use of any generated content (ie, explaining what content was generated and the names and versions of the tools used), and to be fully accountable for the content, including the rights to include such content in scientific publication.
- 8 August 2023
- Published by American Medical Association (AMA) in JAMA
- Vol. 330 (6) , 566-567
Implications of Nonhuman “Authors”—Reply
In Reply We thank Mr Uzoigwe and Dr Matsui and colleagues for their thoughtful comments in response to our Editorial.1 Uzoigwe’s concerns about copyright of content generated by LLMs, neural networks, and similar AI tools have been widely discussed,2,3 are in active litigation,3 and have been considered by the US Copyright Office4 and the World Intellectual Property Organization.5 Most agencies and jurisdictions require a human author to create or substantially contribute to the creation of the content for copyright to apply,4,5 but there are ongoing discussions and often heated debates about the future of copyright and AI-generated content that go beyond legal interests, including concerns about ethics, plagiarism, and the displacement of jobs and elimination of creative professions. Companies that produce these tools have guidance regarding the reuse of generated content, but these may not be well understood by users. In addition, there is confusion about what defines “derivative” content and how “fair use” (which allows reuse of a small amount of text or graphic material for criticism, comment, news reporting, teaching, scholarship, or research)6 may or may not apply in the context of AI-generated content. To date, the US Copyright Office has denied copyright application for AI-generated work and also determined that a human-authored graphic novel combined with AI-generated images was copyrightable, but that the individual images could not be protected by copyright.4 The office has “launched an agency-wide initiative to delve into a wide range of these issues,” including public hearings.4 Hence, there is much uncertainty regarding rights to reuse AI-generated content in scholarly publication. We advise authors to respect the rights and licensing terms of any original content, to check the terms and conditions for reuse of any generated content, to be completely transparent about the use of any generated content (ie, explaining what content was generated and the names and versions of the tools used), and to be fully accountable for the content, including the rights to include such content in scientific publication.
- 18 April 2023
- Published by American Medical Association (AMA) in JAMA
- Vol. 329 (15) , 1315
The Growth of Medical Knowledge and Data Sharing—Reply
In Reply We thank Dr Boffa and colleagues for their insightful comments in response to our Editorial describing expanded opportunities for researchers to share data in compliance with funder mandates.1 We agree with their concerns about the rights of research participants and patients to privacy and risks of reidentification from data sets considered anonymous.2,3 JAMA and the JAMA Network journals offer investigators a set of defined questions regarding their plans to share data when submitting manuscripts reporting research, which include whether the data to be shared are “deidentified participant data” or “participant data with identifiers.” While journals are responsible for ensuring that research participants and patients are not identified in published articles,4 journals are not responsible for the actual sharing of data or managing the risk of reidentification of individuals in shared anonymized data sets. Researchers, funders, and data providers must understand the risks of reidentification for data determined to be “deidentified”2,3 and should consider the safeguard approaches recommended by Boffa and colleagues for appropriate data infrastructure and protocols to share data securely as well as proposals for researchers to assess reidentification risk5 and to manage and minimize that risk.6
- 18 April 2023
- Published by American Medical Association (AMA) in JAMA
- Vol. 329 (15) , 1315
The Growth of Medical Knowledge and Data Sharing—Reply
In Reply We thank Dr Boffa and colleagues for their insightful comments in response to our Editorial describing expanded opportunities for researchers to share data in compliance with funder mandates.1 We agree with their concerns about the rights of research participants and patients to privacy and risks of reidentification from data sets considered anonymous.2,3 JAMA and the JAMA Network journals offer investigators a set of defined questions regarding their plans to share data when submitting manuscripts reporting research, which include whether the data to be shared are “deidentified participant data” or “participant data with identifiers.” While journals are responsible for ensuring that research participants and patients are not identified in published articles,4 journals are not responsible for the actual sharing of data or managing the risk of reidentification of individuals in shared anonymized data sets. Researchers, funders, and data providers must understand the risks of reidentification for data determined to be “deidentified”2,3 and should consider the safeguard approaches recommended by Boffa and colleagues for appropriate data infrastructure and protocols to share data securely as well as proposals for researchers to assess reidentification risk5 and to manage and minimize that risk.6
- 1 March 2023
- Published by American Medical Association (AMA) in JAMA Network Open
- Vol. 6 (3) , e231706
Comparison of Reporting Race and Ethnicity in Medical Journals Before and After Implementation of Reporting Guidance, 2019-2022
Previous research has found limited progress in reporting race and socioeconomic status in studies published in medical journals from 2015 to 2019.1 This study compared race and ethnicity reporting in 3 medical journals before and after implementation of Updated Guidance on the Reporting of Race and Ethnicity in Medical and Science Journals in August 2021.2
- 1 March 2023
- Published by American Medical Association (AMA) in JAMA Network Open
- Vol. 6 (3) , e231706
Comparison of Reporting Race and Ethnicity in Medical Journals Before and After Implementation of Reporting Guidance, 2019-2022
Previous research has found limited progress in reporting race and socioeconomic status in studies published in medical journals from 2015 to 2019.1 This study compared race and ethnicity reporting in 3 medical journals before and after implementation of Updated Guidance on the Reporting of Race and Ethnicity in Medical and Science Journals in August 2021.2
- Top Cited PapersOpen Access
- 28 February 2023
- Published by American Medical Association (AMA) in JAMA
- Vol. 329 (8) , 637-639
Nonhuman “Authors” and Implications for the Integrity of Scientific Publication and Medical Knowledge
Artificial intelligence (AI) technologies to help authors improve the preparation and quality of their manuscripts and published articles are rapidly increasing
- 28 February 2023
- Published by American Medical Association (AMA) in JAMA
- Vol. 329 (8) , 637-639
Top Cited PapersOpen AccessNonhuman “Authors” and Implications for the Integrity of Scientific Publication and Medical Knowledge
Artificial intelligence (AI) technologies to help authors improve the preparation and quality of their manuscripts and published articles are rapidly increasing