Narinder P. S. Dhillon

Tomato leaf curl New Delhi virus (ToLCNDV) is a begomovirus causing significant melon (Cucumis melo) crop losses globally. This study aims to map the ToLCNDV resistance in the PI 414723 melon accession, previously identified and characterized through phenotypic studies, thereby exploring shared genomic regions with the established resistant source WM-7. In the present study, WM-7 and PI 414723 were crossed with the susceptible accessions ‘Rochet’ and ‘Blanco’ respectively, to generate F₁ hybrids. These hybrids were self-pollinated to generate the populations for mapping the ToLCNDV resistance region and designing markers for marker-assisted selection. Disease evaluation included visual symptom scoring, viral-load quantification and tissue printing. Genotyping-by-sequencing and SNP markers were used for quantitative trait loci (QTL) mapping. For genetic analysis, qPCR and bulked segregant RNA-seq (BSR-seq) were performed. Gene expression was assessed using RNA-seq, and qRT-PCR was used for confirmation. The research narrows the candidate region for resistance in WM-7 and identifies overlapping QTLs on chromosome 11 in PI 414723, found in the region of the DNA primase large subunit. BSR-seq and expression analyses highlight potential regulatory roles of chromosome 2 in conferring resistance. Differential expression was confirmed for six genes in the candidate region on chromosome 2. This study confirms the existence of common resistance genes in PI 414723 and WM-7.

The mission of the World Vegetable Center (WorldVeg) is research and development to realize the potential of vegetables for healthier lives and more resilient livelihoods. WorldVeg operates across Asia and Africa, and its breeding portfolio comprises global as well as traditional vegetables. Cucurbit crops make an important contribution to global food and nutrition security and are economically important to smallholder farmers in Asia, who account for 83% of global cucurbit production. The global cucurbit breeding program of WorldVeg focuses on four species: bitter gourd (Momordica charantia), tropical pumpkin (Cucurbita moschata), ridge gourd (Luffa acutangula), and sponge gourd (Luffa cylindrica syn. L. aegyptiaca). Improved cultivars have been developed by the private seed industry, however, repeated recycling of lines derived from elite hybrids has narrowed the genetic base and reduced genetic gains for yield and other key traits. This trend will continue unless a concerted effort is made to introduce new genetic variability into elite hybrids. WorldVeg has organized a breeding consortium with seed companies to facilitate access to the Center’s new breeding lines derived from hitherto unexploited landraces to develop genetically diverse, improved cucurbit cultivars with enhanced yield and resistance to major diseases. Through this partnership, WorldVeg presents its improved lines and F₁ hybrids at Crop Field Days for selection by private seed industry staff engaged in breeding, product development, and sales and marketing.

Two loofah (Luffa) species, the ridge gourd (Luffa acutangula (L.) Roxb.) and the sponge gourd (L. cylindrica (L.) M. Roem.; syn. L. aegyptiaca), are cultivated widely in Asia by smallholder famers. Both species have significant economic and nutritional importance. However, Tomato leaf curl New Delhi virus (ToLCNDV) and downy mildew (DM) caused by Pseudoperonospora cubensis are important biotic constraints to loofah production throughout Asia. Loofah landrace-derived breeding lines, developed at the World Vegetable Center (WorldVeg), were evaluated at the WorldVeg East and Southeast Asia Research and Training Station, Kasetsart University, Kamphaeng Saen, Thailand—where natural epidemics of ToLCNDV and DM regularly occur. The lines were also evaluated for other commercially important horticultural traits such as days to 50% staminate and pistillate flowering, fruit color, fruit bitterness, and market segment classification. Thirteen and 59 lines of ridge gourd and sponge gourd, respectively, were determined to be resistant to both ToLCNDV and DM. These lines covered all market segments of loofah and exhibited variability for all of the evaluated horticultural traits. The results of these evaluations and their implications on loofah breeding are discussed.

Bitter gourd (Momordica charantia) is a popular cultivated vegetable in Asian and African countries. To reveal the characteristics of the genomic structure, evolutionary trajectory, and genetic basis underlying the domestication of bitter gourd, we performed whole-genome sequencing of the cultivar Dali-11 and the wild small-fruited line TR and resequencing of 187 bitter gourd germplasms from 16 countries. The major gene clusters (Bi clusters) for the biosynthesis of cucurbitane triterpenoids, which confer a bitter taste, are highly conserved in cucumber, melon, and watermelon. Comparative analysis among cucurbit genomes revealed that the Bi cluster involved in cucurbitane triterpenoid biosynthesis is absent in bitter gourd. Phylogenetic analysis revealed that the TR group, including 21 bitter gourd germplasms, may belong to a new species or subspecies independent from M. charantia. Furthermore, we found that the remaining 166 M. charantia germplasms are geographically differentiated, and we identified 710, 412, and 290 candidate domestication genes in the South Asia, Southeast Asia, and China populations, respectively. This study provides new insights into bitter gourd genetic diversity and domestication and will facilitate the future genomics-enabled improvement of bitter gourd.

Bitter gourd (Momordica charantia) is a vegetable and medicinal plant of the family Cucurbitaceae. Here we report a chromosome-level assembly, with highest contig N50 (close to 10 Mb) and proportion of sequences placed on chromosomes (96%) in Cucurbitaceae. Population resequencing revealed the divergence between wild and cultivars at about 6000 years ago. Different cultivar groups have distinct allelic compositions in loci associated with domestication traits, suggesting phenotypic changes were achieved by allele frequency shifts in independent loci. Noticeably, one candidate locus for fruit size locates within a region missing from a recent Illumina-based assembly. Despite breeding efforts to increase female flower proportion, the gynoecy locus exhibits high variation within and low differentiation between wild and cultivar groups, likely because artificial directional selection could not overwhelm natural balancing selection. Our study provides resources to further investigate the genetic architecture of bitter gourd as well highlights the importance of a well-assembled genome.

The importance of Indian germplasm as origin and primary center of diversity of cultivated melon is widely accepted. Genetic diversity of several collections from Indian has been studied previously, although an integrated analysis of these collections in a global diversity perspective has not been possible. In this study, a sample of Indian collections together with a selection of world-wide cultivars to analyze the genetic diversity structure based on Genotype by Sequence data. A set of 6158 informative Single Nucleotide Polymorphism (SNP) in 175 melon accessions was generated. Melon germplasm could be classified into six major groups, in concordance with horticultural groups. Indian group was in the center of the diversity plot, with the highest genetic diversity. No strict genetic differentiation between wild and cultivated accessions was appreciated in this group. Genomic regions likely involved in the process of diversification were also found. Interestingly, some SNPs differentiating inodorus and cantalupensis groups are linked to Quantitiative Trait Loci involved in ripening behavior (a major characteristic that differentiate those groups). Linkage disequilibrium was found to be low (17 kb), with more rapid decay in euchromatic (8 kb) than heterochromatic (30 kb) regions, demonstrating that recombination events do occur within heterochromatn, although at lower frequency than in euchromatin. Concomitantly, haplotype blocks were relatively small (59 kb). Some of those haplotype blocks were found fixed in different melon groups, being therefore candidate regions that are involved in the diversification of melon cultivars. The results support the hypothesis that India is the primary center of diversity of melon, Occidental and Far-East cultivars have been developed by divergent selection. Indian germplasm is genetically distinct from African germplasm, supporting independent domestication events. The current set of traditional Indian accessions may be considered as a population rather than a standard collection of fixed landraces with high intercrossing between cultivated and wild melons.

Cucurbit powdery mildew (CPM) caused by Podosphaera xanthii ( Px ) is an economically important disease of bitter gourd (BG; Momordica charantia ) in Asia. High-level resistance to CPM is known in various BG accessions that have been used to develop BG breeding lines that originated in different countries. BG breeding lines THMC 113 (Belize), THMC 143 (India), THMC 153 (Thailand), THMC 167 (India), and THMC 170 (Taiwan) possess high-level resistance to BG Px race (BG-CPM), designated Mc-1 from a field at Kamphaeng Saen, Thailand, whereas THMC 144 (India) is susceptible. Our objective was to determine the inheritance of resistance to BG-CPM race Mc-1. To that end, THMC 144 (India) was crossed with the five resistant lines. The parents and their respective F ₁ , F ₂ , backcross progenies were evaluated for BG-CPM disease severity in inoculated field and growth chamber tests. Resistance to BG-CPM race Mc-1 in the five resistant lines was controlled by at least two independent, recessive genes. Intercrosses of the BG-CPM–resistant lines revealed allelic resistances in four of the breeding lines: THMC 113, THMC 153, THMC 167, and THMC 170. Resistance in THMC 143 was clearly non-allelic for resistance to BG-CPM with the other four BG-CPM–resistant lines.

Bitter gourd ( Momordica charantia L.) is a commercially and nutritionally important market vegetable in Asia cultivated mainly by smallholder farmers. Cucurbit powdery mildew (CPM) caused by Podosphaera xanthii ( Px ) is a nearly ubiquitous and serious fungal disease of bitter gourd. Five bitter gourd breeding lines ( THMC 113, THMC 143, THMC 153, THMC 167, and THMC 170) were selected at the World Vegetable Center for resistance to a local isolate of Px in Kamphaeng Saen, Thailand. We evaluated the resistance potential of these five inbred lines against local isolates of Px at 12 locations in five Asian countries. Plants were inoculated with the respective local Px isolate 15 and 30 days after transplanting and additional Px -infected plants of the inoculated control were interplanted throughout each test. Plants were rated 60 days after transplanting for CPM reaction using a 0 (no evidence of infection) to 5 (>75% infection evident on individual leaves) disease severity scale. THMC 153 and THMC 167 were resistant to the local race of Px in all locations, whereas THMC 143 was observed resistant in all test locations except one in China. THMC 113 was resistant in each location except one in India. THMC 170 was susceptible in three locations in India. The multilocation tests revealed four unique Px races on bitter gourd in different Asian countries and sources of resistance for breeding CPM-resistant bitter gourd cultivars. Six strains of Px isolated from other cucurbits ( Cucumis and Cucurbita ) and representing five melon CPM races were unable to infect the susceptible M. charantia accession THMC 144 and the five resistant breeding lines, indicating pathotype differences between them and an isolate of M. charantia origin typed as race 1 on melon. THMC 143 and THMC 167, which originated from India, exhibited good yield potential in trials conducted in Thailand, Myanmar, Vietnam, and Bangladesh.

We report here the genetic characterization of bitter gourd ( Momordica charantia ) based on polymorphisms of 50 simple sequence repeat (SSR) loci in 114 accessions that included landraces, breeding lines, and commercial open-pollinated and F ₁ hybrid cultivars widely grown in Asia. Neighbor-joining tree analysis revealed a high level of genetic variability in the collection. The 114 accessions formed three subpopulations represented by five clusters. Distribution of accessions across the five clusters reflected their geographic origin to a large extent. South Asian accessions originating from India, Bangladesh, and Pakistan were more closely related to each other than to any other geographical group. Likewise, southeast Asian accessions that originated from Cambodia, Vietnam, Indonesia, and Philippines were grouped together. Accessions that originated from Taiwan were genetically distinct and grouped separately. A landrace from Laos was genetically close to the accessions from Thailand and genetically distinct from the rest of the accessions. White-fruited genotypes were genetically distinct from green- and dark green–fruited genotypes. Low- and medium-bitter accessions were more similar to each other than to the high-bitter genotypes. Accessions with cylindrical fruit were genetically distinct from those with spindle or elongated fruit. Commercial cultivars in each cluster were closely related, which indicated a narrowing of the bitter gourd genetic base in Asia in response to market demands for uniformity and yield. Use of diverse germplasm resources in bitter gourd breeding will help in sustainable breeding and production.