Shanwen Li
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Shanwen Li has a total of 47 co-authors. Here are the top co-authors by number of shared publications:
- Xinmin An
State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology Beijing Forestry University Beijing China
3 shared publications - Ruonan Zhuang
Shandong Aacademy of Forestry, Jinan 250014, China
2 shared publications - Xiaoyan Zhang
Academy of Forestry, Hebei Agricultural University, Baoding 071000, China
2 shared publications - Bin Guo
Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
1 shared publication - Bin Guo
State Key Laboratory of Tree Genetics and Breeding, National Engineering Research Center of Tree Breeding and Ecological Remediation, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
1 shared publication - Bingqi Lei
National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
1 shared publication
Latest Publications
- Open Access
Selection of Stable and High-Yielding Poplar Clones Using BLUP–GGE Across Multiple Environments
Understanding genotype × environment interactions (G × E) is essential for selection of stable and productive clones in poplar breeding. However, the performance of hybrid poplar clones often varies unpredictably across sites, hindering efficient regional deployment. In this study, we evaluated the growth performance of 21 hybrid Populus section Aigeiros clones under five contrasting environmental conditions (YI, SHAN, SHEN, FEI, and JUAN). At the end of the growing season, we measured tree height (H), diameter at breast height (DBH), and individual tree volume (V). Both parametric and non-parametric stability statistics were used to assess individual V and fitted a mixed linear model in ASReml–R to generate best linear unbiased prediction (BLUP) values for subsequent genotype plus genotype-by-environment (GGE) biplot analysis. All measured traits exhibited substantial phenotypic variation, with coefficients of variation ranging from 17% to 43%. Genotype, environment, and G × E interaction effects were all highly significant (p < 0.01). The GGE biplot explained 89.88% of the total variation in individual V across test environments. Clones 1617 and 1618 exhibited high productivity, broad stability and strong adaptability across sites. Site discrimination and representativeness analyses revealed that SHAN, SHEN, FEI and JUAN were more informative, whereas YI showed weaker genotype differentiation. Clones 1617 and 1618 were particularly well adapted to FEI and JUAN, while clones 81, 1618, 13–22, 1607, I–107 and 1617 performed favourably in the other mega-environment. Our results indicate that integrating BLUP with GGE biplot analysis provides a robust framework for dissecting G × E and guiding clone selection in multi-environment poplar trials. The study provides valuable insights for refining poplar deployment strategies under diverse environmental conditions.
Open AccessSelection of Stable and High-Yielding Poplar Clones Using BLUP–GGE Across Multiple Environments
Understanding genotype × environment interactions (G × E) is essential for selection of stable and productive clones in poplar breeding. However, the performance of hybrid poplar clones often varies unpredictably across sites, hindering efficient regional deployment. In this study, we evaluated the growth performance of 21 hybrid Populus section Aigeiros clones under five contrasting environmental conditions (YI, SHAN, SHEN, FEI, and JUAN). At the end of the growing season, we measured tree height (H), diameter at breast height (DBH), and individual tree volume (V). Both parametric and non-parametric stability statistics were used to assess individual V and fitted a mixed linear model in ASReml–R to generate best linear unbiased prediction (BLUP) values for subsequent genotype plus genotype-by-environment (GGE) biplot analysis. All measured traits exhibited substantial phenotypic variation, with coefficients of variation ranging from 17% to 43%. Genotype, environment, and G × E interaction effects were all highly significant (p < 0.01). The GGE biplot explained 89.88% of the total variation in individual V across test environments. Clones 1617 and 1618 exhibited high productivity, broad stability and strong adaptability across sites. Site discrimination and representativeness analyses revealed that SHAN, SHEN, FEI and JUAN were more informative, whereas YI showed weaker genotype differentiation. Clones 1617 and 1618 were particularly well adapted to FEI and JUAN, while clones 81, 1618, 13–22, 1607, I–107 and 1617 performed favourably in the other mega-environment. Our results indicate that integrating BLUP with GGE biplot analysis provides a robust framework for dissecting G × E and guiding clone selection in multi-environment poplar trials. The study provides valuable insights for refining poplar deployment strategies under diverse environmental conditions.
- Open Access
Comparative Analysis of the Characteristics, Phylogenetic Relationships of the Complete Chloroplast Genome, and Maternal Origin Track of White Poplar Interspecific Hybrid GM107
White poplars are a dominant tree species in natural ecosystems throughout China, where they are also widely planted for agroforestry and industrial uses. However, the phylogenetic relationships among poplars in section Populus have a complex genetic background influenced by frequent hybridization events and, to date, only a few studies have attempted to clarify this background. In this study, we performed de novo assembly of the whole chloroplast (cp) genome of an elite individual GM107 with the size of 156,493 bp, which consists of a large single-copy (LSR) (84,610 bp), a small single-copy (SSC) (16,567 bp), and a pair of inverted repeats (27,658 bp). It comprises 127 genes, including 85 protein-coding genes, 36 tRNAs, and 6 rRNAs. Comparative analysis of the cp genomes was conducted among 7 poplars in section Populus and 4 cp DNA markers with >1% variable sites were detected. We found that Populus alba was the most closely related species to GM107 by phylogenetic analyses. RNA sequencing detected 66 genes that participated in translation, transcription, and photosynthesis. The expression levels of almost all 66 genes were higher in leaves than in other tissues, except for PtatpF and PtatpH. In all tissues, we detected higher transcript abundances of PtndhF, PtpsbA, PtpsbB, Ptrps14, PtatpF, and PtatpH than of other genes. Both cp genome and transcriptome data help understand evolution events in section Populus and unravel the origin of Chinese white poplars, and may contribute to the molecular genetic improvement of wood properties and carbon sink capacities in the breeding of poplars in this section.
Open AccessComparative Analysis of the Characteristics, Phylogenetic Relationships of the Complete Chloroplast Genome, and Maternal Origin Track of White Poplar Interspecific Hybrid GM107
White poplars are a dominant tree species in natural ecosystems throughout China, where they are also widely planted for agroforestry and industrial uses. However, the phylogenetic relationships among poplars in section Populus have a complex genetic background influenced by frequent hybridization events and, to date, only a few studies have attempted to clarify this background. In this study, we performed de novo assembly of the whole chloroplast (cp) genome of an elite individual GM107 with the size of 156,493 bp, which consists of a large single-copy (LSR) (84,610 bp), a small single-copy (SSC) (16,567 bp), and a pair of inverted repeats (27,658 bp). It comprises 127 genes, including 85 protein-coding genes, 36 tRNAs, and 6 rRNAs. Comparative analysis of the cp genomes was conducted among 7 poplars in section Populus and 4 cp DNA markers with >1% variable sites were detected. We found that Populus alba was the most closely related species to GM107 by phylogenetic analyses. RNA sequencing detected 66 genes that participated in translation, transcription, and photosynthesis. The expression levels of almost all 66 genes were higher in leaves than in other tissues, except for PtatpF and PtatpH. In all tissues, we detected higher transcript abundances of PtndhF, PtpsbA, PtpsbB, Ptrps14, PtatpF, and PtatpH than of other genes. Both cp genome and transcriptome data help understand evolution events in section Populus and unravel the origin of Chinese white poplars, and may contribute to the molecular genetic improvement of wood properties and carbon sink capacities in the breeding of poplars in this section.
- Open Access
G×E Analysis of Early Growth Traits of Populus deltoides in East China by Using BLUP-GGE
In temperate and subtropical climates, Populus deltoides is an important poplar species. To analyze the stability, adaptability, and high yield of P. deltoides hybrid genotypes in East China, 38 P. deltoides genotypes were screened at three experimental sites in Shandong Province, and the coefficients of variation and genetic characteristics of 5-year growth were examined using BLUP-GGE. Results showed that all coefficients of variance were higher for diameter at breast height (DBH) than for tree height at all sites; the repeatability and heritability of tree height were greater than those of DBH at all sites. The fitting degree of tree height and DBH was 93.72% and 92.22%, respectively. The optimum genotype varied by location and grouping, of which Shanxian County divisions are the most powerful and representative of the three sites. The growth of 5-year-old P. deltoides was highly varied because of hereditary factors. Shanxian County is the more appropriate site for growth of P. deltoides in the tested sites in East China. In East China, genotypes 16, 5, 21, and 7 are regarded as superior. The genotypes 8, 26, and 36 are better for the site Rizhao; 16, 5, and 21 for site Shanxian; and 22, 21, and 5 for site Boxing.
Open AccessG×E Analysis of Early Growth Traits of Populus deltoides in East China by Using BLUP-GGE
In temperate and subtropical climates, Populus deltoides is an important poplar species. To analyze the stability, adaptability, and high yield of P. deltoides hybrid genotypes in East China, 38 P. deltoides genotypes were screened at three experimental sites in Shandong Province, and the coefficients of variation and genetic characteristics of 5-year growth were examined using BLUP-GGE. Results showed that all coefficients of variance were higher for diameter at breast height (DBH) than for tree height at all sites; the repeatability and heritability of tree height were greater than those of DBH at all sites. The fitting degree of tree height and DBH was 93.72% and 92.22%, respectively. The optimum genotype varied by location and grouping, of which Shanxian County divisions are the most powerful and representative of the three sites. The growth of 5-year-old P. deltoides was highly varied because of hereditary factors. Shanxian County is the more appropriate site for growth of P. deltoides in the tested sites in East China. In East China, genotypes 16, 5, 21, and 7 are regarded as superior. The genotypes 8, 26, and 36 are better for the site Rizhao; 16, 5, and 21 for site Shanxian; and 22, 21, and 5 for site Boxing.
- Open Access
- 7 December 2021
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 22 (24) , 13200
Investigation of PtSGT1 and PtSGT4 Function in Cellulose Biosynthesis in Populus tomentosa Using CRISPR/Cas9 Technology
Cellulose synthesis is a complex process in plant cells that is important for wood processing, pulping, and papermaking. Cellulose synthesis begins with the glycosylation of sitosterol by sitosterol glycosyltransferase (SGT) to produce sitosterol-glucoside (SG), which acts as the guiding primer for cellulose production. However, the biological functions of SGTs in Populus tomentosa(P. tomentosa) remain largely unknown. Two full-length PtSGT genes (PtSGT1 and PtSGT4) were previously isolated from P. tomentosa and characterized. In the present study, CRISPR/Cas9 gene-editing technology was used to construct PtSGT1-sgRNA and PtSGT4-sgRNA expression vectors, which were genetically transformed into P. tomentosa using the Agrobacterium-mediated method to obtain transgenic lines. Nucleic acid and amino acid sequencing analysis revealed both base insertions and deletions, in addition to reading frame shifts and early termination of translation in the transgenic lines. Sugar metabolism analysis indicated that sucrose and fructose were significantly downregulated in stems and leaves of mutant PtSGT1-1 and PtSGT4-1. Glucose levels did not change significantly in roots and stems of PtSGT1-1 mutants; however, glucose was significantly upregulated in stems and downregulated in leaves of the PtSGT4-1 mutants. Dissection of the plants revealed disordered and loosely arranged xylem cells in the PtSGT4-1 mutant, which were larger and thinner than those of the wild-type. This work will enhance our understanding of cellulose synthesis in the cell walls of woody plants.
- 7 December 2021
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 22 (24) , 13200
Open AccessInvestigation of PtSGT1 and PtSGT4 Function in Cellulose Biosynthesis in Populus tomentosa Using CRISPR/Cas9 Technology
Cellulose synthesis is a complex process in plant cells that is important for wood processing, pulping, and papermaking. Cellulose synthesis begins with the glycosylation of sitosterol by sitosterol glycosyltransferase (SGT) to produce sitosterol-glucoside (SG), which acts as the guiding primer for cellulose production. However, the biological functions of SGTs in Populus tomentosa(P. tomentosa) remain largely unknown. Two full-length PtSGT genes (PtSGT1 and PtSGT4) were previously isolated from P. tomentosa and characterized. In the present study, CRISPR/Cas9 gene-editing technology was used to construct PtSGT1-sgRNA and PtSGT4-sgRNA expression vectors, which were genetically transformed into P. tomentosa using the Agrobacterium-mediated method to obtain transgenic lines. Nucleic acid and amino acid sequencing analysis revealed both base insertions and deletions, in addition to reading frame shifts and early termination of translation in the transgenic lines. Sugar metabolism analysis indicated that sucrose and fructose were significantly downregulated in stems and leaves of mutant PtSGT1-1 and PtSGT4-1. Glucose levels did not change significantly in roots and stems of PtSGT1-1 mutants; however, glucose was significantly upregulated in stems and downregulated in leaves of the PtSGT4-1 mutants. Dissection of the plants revealed disordered and loosely arranged xylem cells in the PtSGT4-1 mutant, which were larger and thinner than those of the wild-type. This work will enhance our understanding of cellulose synthesis in the cell walls of woody plants.
- Open Access
- 1 June 2021
- Published by Elsevier in Ecotoxicology and Environmental Safety
- Vol. 216, 112179
Comparative transcriptomic analysis reveals the coordinated mechanisms of Populus × canadensis ‘Neva’ leaves in response to cadmium stress
- 1 June 2021
- Published by Elsevier in Ecotoxicology and Environmental Safety
- Vol. 216, 112179
Open AccessComparative transcriptomic analysis reveals the coordinated mechanisms of Populus × canadensis ‘Neva’ leaves in response to cadmium stress
- Open Access
Variation in the Growth Traits and Wood Properties of Hybrid White Poplar Clones
The physical and chemical properties of poplar clones largely determine their suitability for different applications. The main objective of this study was to investigate clonal variation in four hybrid poplar clones grown at three sites in North China and identify the superior clone. Study materials were collected from four clones of hybrid white poplar: Populus tomentosa “LM50”, used as the control; two clones (Yiyang-1 and Yiyang-2), new hybrids of (P. tomentosa × P. bolleana) × P. tomentosa “Truncata”; and Yiyang-3, a new hybrid of (P. tomentosa × P. bolleana) × P. tomentosa “LM50”. In total, 192 individuals from four hybrid clones were randomly chosen for sampling. The growth traits of four 7-year-old clones were examined at three sites. We also measured the wood properties of four 6-year-old clones at the Fengfeng nursery. Variation in the growth traits and the ranking of stem volumes differed among sites. Fiber traits and wood chemical components showed significant interclonal variation. With regard to the comprehensive growth rate, cellulose content, holocellulose content, and fiber traits, Yiyang-1 exhibited the best performance among the four hybrid poplar clones, indicating its utility as a raw material for pulp and papermaking.
Open AccessVariation in the Growth Traits and Wood Properties of Hybrid White Poplar Clones
The physical and chemical properties of poplar clones largely determine their suitability for different applications. The main objective of this study was to investigate clonal variation in four hybrid poplar clones grown at three sites in North China and identify the superior clone. Study materials were collected from four clones of hybrid white poplar: Populus tomentosa “LM50”, used as the control; two clones (Yiyang-1 and Yiyang-2), new hybrids of (P. tomentosa × P. bolleana) × P. tomentosa “Truncata”; and Yiyang-3, a new hybrid of (P. tomentosa × P. bolleana) × P. tomentosa “LM50”. In total, 192 individuals from four hybrid clones were randomly chosen for sampling. The growth traits of four 7-year-old clones were examined at three sites. We also measured the wood properties of four 6-year-old clones at the Fengfeng nursery. Variation in the growth traits and the ranking of stem volumes differed among sites. Fiber traits and wood chemical components showed significant interclonal variation. With regard to the comprehensive growth rate, cellulose content, holocellulose content, and fiber traits, Yiyang-1 exhibited the best performance among the four hybrid poplar clones, indicating its utility as a raw material for pulp and papermaking.