Toru Yamada
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Toru Yamada has a total of 28 co-authors. Here are the top co-authors by number of shared publications:
- Shinji Tamano
Graduate School of Engineering, Nagoya Institute of Technology
6 shared publications - Yohei Morinishi
Nagoya Institute of Technology
6 shared publications - Yutaka Asako
Malaysia-Japan International Institute of Technology, Universiti Teknologi Malaysia, Jalan Sultan Yahya Petra, 54100 Kuala Lumpur, Malaysia
6 shared publications Bengt Sundén
Department of Energy Sciences, Faculty of Engineering, Lund University, Lund, Sweden
4 shared publications- Jinliang Yuan
Faculty of Maritime and Transportation, Ningbo University, Ningbo, China
4 shared publications Mohammad Faghri
University of Rhode Island, Kingston, RI
4 shared publications
Latest Publications
- 3 April 2025
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 162 (13)
Application of Nosé–Hoover dynamics for coarse-graining molecular systems: An evaluation of reproducibility in Lennard-Jones systems
This study proposes an application of Nosé–Hoover (NH) dynamics as a coarse-graining (CG) method for molecular simulations, offering an alternative to traditional Langevin-based approaches. The NH dynamics, known for its deterministic temperature control without stochastic forces, is adapted here to model a monoatomic Lennard-Jones system at different coarse-grained levels. The CG particle’s equation of motion is derived from atomic-level dynamics, linking NH thermostat terms with system properties obtained from molecular dynamics (MD) simulations. Key parameters, including the thermostat coefficient and thermal inertia, are calibrated using the MD data to assess their impact on the dynamic and structural reproducibility of the CG model. The calibration results suggest the potential application of NH dynamics as a coarse-graining method. The effectiveness of the proposed method is then evaluated through a set of CG simulations. The CG results show stable energy regulation and promising accuracy in reproducing system properties, particularly for mass diffusion, with opportunities for further refinement in representing structural reproducibility and momentum diffusion.
- 3 April 2025
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 162 (13)
Application of Nosé–Hoover dynamics for coarse-graining molecular systems: An evaluation of reproducibility in Lennard-Jones systems
This study proposes an application of Nosé–Hoover (NH) dynamics as a coarse-graining (CG) method for molecular simulations, offering an alternative to traditional Langevin-based approaches. The NH dynamics, known for its deterministic temperature control without stochastic forces, is adapted here to model a monoatomic Lennard-Jones system at different coarse-grained levels. The CG particle’s equation of motion is derived from atomic-level dynamics, linking NH thermostat terms with system properties obtained from molecular dynamics (MD) simulations. Key parameters, including the thermostat coefficient and thermal inertia, are calibrated using the MD data to assess their impact on the dynamic and structural reproducibility of the CG model. The calibration results suggest the potential application of NH dynamics as a coarse-graining method. The effectiveness of the proposed method is then evaluated through a set of CG simulations. The CG results show stable energy regulation and promising accuracy in reproducing system properties, particularly for mass diffusion, with opportunities for further refinement in representing structural reproducibility and momentum diffusion.
- Open Access
- 1 May 2022
- Published by AIP Publishing in AIP Advances
- Vol. 12 (5) , 055109
Drag reduction due to nonionic-type surfactants in turbulent pipe flow of ethylene glycol aqueous solution
The drag-reducing effects of two nonionic-type surfactants, oleyl-N, N-dimethylamine N-oxide (ODMAO) and octadecyl-N, N-bis(2-hydroxyethyl)amine N-oxide (C18BAO), in ethylene glycol (EG) aqueous solution were comprehensively investigated at various surfactant concentrations of up to 2000 ppm by weight at various solution temperatures ranging from −5 to 80 °C in turbulent pipe flows. In EG aqueous solution (30% by weight), the mixture of ODMAO with salicylic acid with a molar ratio of 0.2 could effectively reduce the turbulent drag in the low-temperature range (up to 40 °C), whereas the effect of C18BAO was more notable at a temperature higher than 40 °C. Furthermore, the mixture of ODMAO and C18BAO in EG aqueous solution exhibited a high drag reduction ratio of more than 60% in a considerably wider range of solution temperatures (from 20 to 60 °C), while the drag reduction performance deteriorated below 0 °C and beyond 60 °C.
- 1 May 2022
- Published by AIP Publishing in AIP Advances
- Vol. 12 (5) , 055109
Open AccessDrag reduction due to nonionic-type surfactants in turbulent pipe flow of ethylene glycol aqueous solution
The drag-reducing effects of two nonionic-type surfactants, oleyl-N, N-dimethylamine N-oxide (ODMAO) and octadecyl-N, N-bis(2-hydroxyethyl)amine N-oxide (C18BAO), in ethylene glycol (EG) aqueous solution were comprehensively investigated at various surfactant concentrations of up to 2000 ppm by weight at various solution temperatures ranging from −5 to 80 °C in turbulent pipe flows. In EG aqueous solution (30% by weight), the mixture of ODMAO with salicylic acid with a molar ratio of 0.2 could effectively reduce the turbulent drag in the low-temperature range (up to 40 °C), whereas the effect of C18BAO was more notable at a temperature higher than 40 °C. Furthermore, the mixture of ODMAO and C18BAO in EG aqueous solution exhibited a high drag reduction ratio of more than 60% in a considerably wider range of solution temperatures (from 20 to 60 °C), while the drag reduction performance deteriorated below 0 °C and beyond 60 °C.
- Open Access
Temperature Error Reduction of DPD Fluid by Using Partitioned Runge-Kutta Time Integration Scheme
This study puts emphasis on reducing the temperature error of dissipative particle dynamics (DPD) fluid by directly applying a minimal-stage third-order partitioned Runge-Kutta (PRK3) method to the time integration, which does not include any of additional governing equations and change in the DPD thermostat formulation. The error is estimated based on the average values of both kinetic and configurational temperatures. The result shows that the errors in both temperatures errors are greatly reduced by using the PRK3 scheme as comparing them to those of previous studies. Additionally, the comparison among three different PRK3 schemes demonstrates our recent findings that the symplecticity conservation of the system is important to reduce the temperature error of DPD fluid especially for large time increments. The computational efficiencies are also estimated for the PRK3 scheme as well as the existing ones. It was found from the estimation that the simulation using the PRK3 scheme is more than twice as efficient as those using the existing ones. Finally, the roles of both kinetic and configurational temperatures as error indicators are discussed by comparing them to the velocity autocorrelation function and the radial distribution function. It was found that the errors of these temperatures involve different characteristics, and thus both temperatures should be taken into account to comprehensively evaluate the numerical error of DPD.
Open AccessTemperature Error Reduction of DPD Fluid by Using Partitioned Runge-Kutta Time Integration Scheme
This study puts emphasis on reducing the temperature error of dissipative particle dynamics (DPD) fluid by directly applying a minimal-stage third-order partitioned Runge-Kutta (PRK3) method to the time integration, which does not include any of additional governing equations and change in the DPD thermostat formulation. The error is estimated based on the average values of both kinetic and configurational temperatures. The result shows that the errors in both temperatures errors are greatly reduced by using the PRK3 scheme as comparing them to those of previous studies. Additionally, the comparison among three different PRK3 schemes demonstrates our recent findings that the symplecticity conservation of the system is important to reduce the temperature error of DPD fluid especially for large time increments. The computational efficiencies are also estimated for the PRK3 scheme as well as the existing ones. It was found from the estimation that the simulation using the PRK3 scheme is more than twice as efficient as those using the existing ones. Finally, the roles of both kinetic and configurational temperatures as error indicators are discussed by comparing them to the velocity autocorrelation function and the radial distribution function. It was found that the errors of these temperatures involve different characteristics, and thus both temperatures should be taken into account to comprehensively evaluate the numerical error of DPD.
- 8 June 2018
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 148 (22) , 224101
Improving computational accuracy in dissipative particle dynamics via a high order symplectic method
This study was focused on improving the numerical accuracy of the dissipative particle dynamics simulation via modifying its numerical time integration scheme. Despite the integration of the pairwise Langevin part dealt with by most of the previous studies, we paid attention to the improvement of the standard Liouville part. The numerical accuracy was measured by the configurational temperature in this study. Employing a fourth order symplectic scheme showed a significant improvement of the numerical accuracy for the simulations especially with a large time increment when comparing it with existing schemes, which indicates that enough resolution in time was attained when our modified scheme was employed. In addition, a set of simulations was performed for a wider range of time increments than previous studies. The results showed that the computational error demonstrated different orders of accuracy for different time increment ranges, which led to the fact that the dominant effect on the error is conservative and random forces for the large and small increment ranges.
- 8 June 2018
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 148 (22) , 224101
Improving computational accuracy in dissipative particle dynamics via a high order symplectic method
This study was focused on improving the numerical accuracy of the dissipative particle dynamics simulation via modifying its numerical time integration scheme. Despite the integration of the pairwise Langevin part dealt with by most of the previous studies, we paid attention to the improvement of the standard Liouville part. The numerical accuracy was measured by the configurational temperature in this study. Employing a fourth order symplectic scheme showed a significant improvement of the numerical accuracy for the simulations especially with a large time increment when comparing it with existing schemes, which indicates that enough resolution in time was attained when our modified scheme was employed. In addition, a set of simulations was performed for a wider range of time increments than previous studies. The results showed that the computational error demonstrated different orders of accuracy for different time increment ranges, which led to the fact that the dominant effect on the error is conservative and random forces for the large and small increment ranges.
- 1 January 2018
- Published by Japan Society of Mechanical Engineers in The Proceedings of Conference of Tokai Branch
- Vol. 2018.67, 321
Energy budgets in drag-reducing turbulent boundary layer flows of viscoelastic fluids
総合学術電子ジャーナルサイト「J-STAGE」-国内で発行された学術論文全文を読むことのできる、日本最大級の総合電子ジャーナルプラットフォームです。
- 1 January 2018
- Published by Japan Society of Mechanical Engineers in The Proceedings of Conference of Tokai Branch
- Vol. 2018.67, 321
Energy budgets in drag-reducing turbulent boundary layer flows of viscoelastic fluids
総合学術電子ジャーナルサイト「J-STAGE」-国内で発行された学術論文全文を読むことのできる、日本最大級の総合電子ジャーナルプラットフォームです。
- 1 January 2017
- Published by Japan Society of Mechanical Engineers in The Proceedings of Conference of Tokai Branch
- Vol. 2017.66, 418
Experimental study on flow drag of flocking pile surface in channel flow
- 1 January 2017
- Published by Japan Society of Mechanical Engineers in The Proceedings of Conference of Tokai Branch
- Vol. 2017.66, 418
Experimental study on flow drag of flocking pile surface in channel flow
- 18 August 2016
- Published by Taylor & Francis in Numerical Heat Transfer, Part A: Applications
- Vol. 70 (6) , 595-612
Dissipative particle dynamics simulations of water droplet flows in a submicron parallel-plate channel for different temperature and surface-wetting conditions
The effects of temperature-dependent thermophysical properties on droplet flow characteristics in a parallel-plate channel at submicron scale are investigated. The dissipative particle dynamics method with many-body (MDPD) and energy conservation (DPDe) configurations (MDPDe) was used. Droplet flows were simulated to study the effects of the temperature difference between top and bottom walls, body force on MDPDe particles, and wall-wetting conditions. The effects on the droplet flow were discussed. Droplet flows with a subzero wall temperature were simulated. An ice layer was formed on the wall. Its thickness and shape changed depending on surface wetting, temperature gradient, and body force.
- 18 August 2016
- Published by Taylor & Francis in Numerical Heat Transfer, Part A: Applications
- Vol. 70 (6) , 595-612
Dissipative particle dynamics simulations of water droplet flows in a submicron parallel-plate channel for different temperature and surface-wetting conditions
The effects of temperature-dependent thermophysical properties on droplet flow characteristics in a parallel-plate channel at submicron scale are investigated. The dissipative particle dynamics method with many-body (MDPD) and energy conservation (DPDe) configurations (MDPDe) was used. Droplet flows were simulated to study the effects of the temperature difference between top and bottom walls, body force on MDPDe particles, and wall-wetting conditions. The effects on the droplet flow were discussed. Droplet flows with a subzero wall temperature were simulated. An ice layer was formed on the wall. Its thickness and shape changed depending on surface wetting, temperature gradient, and body force.
- 1 March 2016
- Published by Elsevier in International Journal of Thermal Sciences
- Vol. 101, 207-216
Modeling mesoscopic solidification using dissipative particle dynamics
- 1 March 2016
- Published by Elsevier in International Journal of Thermal Sciences
- Vol. 101, 207-216
Modeling mesoscopic solidification using dissipative particle dynamics