Arash Mirhashemi
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Arash Mirhashemi has a total of 26 co-authors. Here are the top co-authors by number of shared publications:
- Ervin Nippolainen
Department of Technical Physics, University of Eastern Finland, Kuopio, Finland
3 shared publications - Iman Kafian-Attari
University of Eastern Finland
3 shared publications - Isaac Oluwaseun Afara
Department of Technical Physics, University of Eastern Finland, Kuopio, Finland
3 shared publications - Akuroma Tolvanen
University of Eastern Finland, Faculty of Science, Forestry and Technology, Department of Technical Physics, Kuopio, Finland
2 shared publications - Alwin Kienle
Institut für Lasertechnologien in der Medizin und Meßtechnik, Universität Ulm, Helmholtzstr. 12, 89081 Ulm, Germany
2 shared publications - Aydin Farajidavar
Neuromuscular Systems Laboratory, Faculty of Biomedical Engineering, Amirkabir University of Technology, 424 Hafez Ave, Tehran 15875-4413, Iran. phone: +98-21-64542369; fax: +98-21-66495655
2 shared publications
Latest Publications
- Open Access
- 15 May 2024
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Biomedical Engineering
- Vol. 71 (8) , 2300-2310
Estimation of Photon Path Length and Penetration Depth in Articular Cartilage Zonal Architecture Over the Therapeutic Window
Objective: The key characteristics of light propagation are the average penetration depth, average maximum penetration depth, and average path length of photons. These parameters depend on tissue optical properties and, thus, on the pathological state of the tissue. Hence, they could provide diagnostic information on tissue integrity. This study investigates these parameters for articular cartilage which has a complex structure. Methods: We utilize Monte Carlo simulation to simulate photon trajectories in articular cartilage and estimate the average values of the light propagation parameters (penetration depth, maximum penetration depth, maximum lateral spread, and path length) in the spectral band of 400-1400 nm based on the optical properties of articular cartilage zonal layers and bulk tissue. Results: Our findings suggest that photons in the visible band probe a localized small volume of articular cartilage superficial and middle zones, while those in the NIR band penetrate deeper into the tissue and have larger lateral spread. In addition, we demonstrate that a simple model of articular cartilage tissue, based on the optical properties of the bulk tissue, is capable to provide an accurate description of the light-tissue interaction in articular cartilage. Conclusion: The results indicate that as the photons in the spectral band of 400-1400 nm can reach the full depth of articular cartilage matrix, they can provide viable information on its pathological state. Therefore, diffuse optical spectroscopy holds significant importance for objectively assessing articular cartilage health. Significance: In this study, for the first time, we estimate the light propagation parameters in articular cartilage.
- 15 May 2024
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Biomedical Engineering
- Vol. 71 (8) , 2300-2310
Open AccessEstimation of Photon Path Length and Penetration Depth in Articular Cartilage Zonal Architecture Over the Therapeutic Window
Objective: The key characteristics of light propagation are the average penetration depth, average maximum penetration depth, and average path length of photons. These parameters depend on tissue optical properties and, thus, on the pathological state of the tissue. Hence, they could provide diagnostic information on tissue integrity. This study investigates these parameters for articular cartilage which has a complex structure. Methods: We utilize Monte Carlo simulation to simulate photon trajectories in articular cartilage and estimate the average values of the light propagation parameters (penetration depth, maximum penetration depth, maximum lateral spread, and path length) in the spectral band of 400-1400 nm based on the optical properties of articular cartilage zonal layers and bulk tissue. Results: Our findings suggest that photons in the visible band probe a localized small volume of articular cartilage superficial and middle zones, while those in the NIR band penetrate deeper into the tissue and have larger lateral spread. In addition, we demonstrate that a simple model of articular cartilage tissue, based on the optical properties of the bulk tissue, is capable to provide an accurate description of the light-tissue interaction in articular cartilage. Conclusion: The results indicate that as the photons in the spectral band of 400-1400 nm can reach the full depth of articular cartilage matrix, they can provide viable information on its pathological state. Therefore, diffuse optical spectroscopy holds significant importance for objectively assessing articular cartilage health. Significance: In this study, for the first time, we estimate the light propagation parameters in articular cartilage.
- Open Access
- 1 December 2023
- Published by SPIE-Intl Soc Optical Eng in Journal of Biomedical Optics
- Vol. 28 (12) , 125003-16
Broadband scattering properties of articular cartilage zones and their relationship with the heterogenous structure of articular cartilage extracellular matrix
The behavior of light in biological tissues is governed by intrinsic fundamental and wavelength-dependent properties (optical properties), including absorption coefficient (), scattering coefficient (), extinction coefficient (), scattering anisotropy factor (), reduced scattering coefficient (), and refractive index ().1 – 3 The key factors determining the optical properties of biological tissues are chemical composition, concentration, size, distribution, and alignment of the tissue matrix’s biomolecules.3 Since these vary between biological tissues and within the same tissue due to biological or pathological processes, this variation often leads to differences in optical properties between healthy and pathological tissues. Thus, the optical properties of biological tissues have been adopted as biomarkers for the non-invasive screening of tissue pathologies in multiple organs, including muscles, brain, skin, heart, and breast.1- 1 December 2023
- Published by SPIE-Intl Soc Optical Eng in Journal of Biomedical Optics
- Vol. 28 (12) , 125003-16
Open AccessBroadband scattering properties of articular cartilage zones and their relationship with the heterogenous structure of articular cartilage extracellular matrix
The behavior of light in biological tissues is governed by intrinsic fundamental and wavelength-dependent properties (optical properties), including absorption coefficient (), scattering coefficient (), extinction coefficient (), scattering anisotropy factor (), reduced scattering coefficient (), and refractive index ().1 – 3 The key factors determining the optical properties of biological tissues are chemical composition, concentration, size, distribution, and alignment of the tissue matrix’s biomolecules.3 Since these vary between biological tissues and within the same tissue due to biological or pathological processes, this variation often leads to differences in optical properties between healthy and pathological tissues. Thus, the optical properties of biological tissues have been adopted as biomarkers for the non-invasive screening of tissue pathologies in multiple organs, including muscles, brain, skin, heart, and breast.1 - Open Access
- 15 June 2023
- Published by Optica Publishing Group in Biomedical Optics Express
- Vol. 14 (7) , 3397-3412
Impact of experimental setup parameters on the measurement of articular cartilage optical properties in the visible and short near-infrared spectral bands
There is increasing research on the potential application of diffuse optical spectroscopy and hyperspectral imaging for characterizing the health of the connective tissues, such as articular cartilage, during joint surgery. These optical techniques facilitate the rapid and objective diagnostic assessment of the tissue, thus providing unprecedented information toward optimal treatment strategy. Adaption of optical techniques for diagnostic assessment of musculoskeletal disorders, including osteoarthritis, requires precise determination of the optical properties of connective tissues such as articular cartilage. As every indirect method of tissue optical properties estimation consists of a measurement step followed by a computational analysis step, there are parameters associated with these steps that could influence the estimated values of the optical properties. In this study, we report the absorption and reduced scattering coefficients of articular cartilage in the spectral band of 400-1400 nm. We assess the impact of the experimental setup parameters, including surrounding medium, sample volume, and scattering anisotropy factor on the reported optical properties. Our results suggest that the absorption coefficient of articular cartilage is sensitive to the variation in the surrounding medium, whereas its reduced scattering coefficient is invariant to the experimental setup parameters.
- 15 June 2023
- Published by Optica Publishing Group in Biomedical Optics Express
- Vol. 14 (7) , 3397-3412
Open AccessImpact of experimental setup parameters on the measurement of articular cartilage optical properties in the visible and short near-infrared spectral bands
There is increasing research on the potential application of diffuse optical spectroscopy and hyperspectral imaging for characterizing the health of the connective tissues, such as articular cartilage, during joint surgery. These optical techniques facilitate the rapid and objective diagnostic assessment of the tissue, thus providing unprecedented information toward optimal treatment strategy. Adaption of optical techniques for diagnostic assessment of musculoskeletal disorders, including osteoarthritis, requires precise determination of the optical properties of connective tissues such as articular cartilage. As every indirect method of tissue optical properties estimation consists of a measurement step followed by a computational analysis step, there are parameters associated with these steps that could influence the estimated values of the optical properties. In this study, we report the absorption and reduced scattering coefficients of articular cartilage in the spectral band of 400-1400 nm. We assess the impact of the experimental setup parameters, including surrounding medium, sample volume, and scattering anisotropy factor on the reported optical properties. Our results suggest that the absorption coefficient of articular cartilage is sensitive to the variation in the surrounding medium, whereas its reduced scattering coefficient is invariant to the experimental setup parameters.
- 21 October 2019
- Published by Society for Imaging Science & Technology in Color and Imaging Conference
- Vol. 27 (1) , 295-299
Deep Learning for Dental Hyperspectral Image Analysis
The aim of this work is automatic and efficient detection of medically-relevant features from oral and dental hyperspectral images by applying up-to-date deep learning convolutional neural network techniques. This will help dentists to identify and classify unhealthy areas automatically and to prevent the progression of diseases. Hyperspectral imaging approach allows one to do so without exposing the patient to ionizing X-ray radiation. Spectral imaging provides information in the visible and near-infrared wavelength ranges. The dataset used in this paper contains 116 hyperspectral images from 18 patients taken from different viewing angles. Image annotation (ground truth) includes 38 classes in six different sub-groups assessed by dental experts. Mask region-based convolutional neural network (Mask R-CNN) is used as a deep learning model, for instance segmentation of areas. Preliminary results show high potential and accuracy for classification and segmentation of different classes.
- 21 October 2019
- Published by Society for Imaging Science & Technology in Color and Imaging Conference
- Vol. 27 (1) , 295-299
Deep Learning for Dental Hyperspectral Image Analysis
The aim of this work is automatic and efficient detection of medically-relevant features from oral and dental hyperspectral images by applying up-to-date deep learning convolutional neural network techniques. This will help dentists to identify and classify unhealthy areas automatically and to prevent the progression of diseases. Hyperspectral imaging approach allows one to do so without exposing the patient to ionizing X-ray radiation. Spectral imaging provides information in the visible and near-infrared wavelength ranges. The dataset used in this paper contains 116 hyperspectral images from 18 patients taken from different viewing angles. Image annotation (ground truth) includes 38 classes in six different sub-groups assessed by dental experts. Mask region-based convolutional neural network (Mask R-CNN) is used as a deep learning model, for instance segmentation of areas. Preliminary results show high potential and accuracy for classification and segmentation of different classes.
- Open Access
- 29 August 2019
- Published by MDPI AG in Computation
- Vol. 7 (3) , 47
Configuration and Registration of Multi-Camera Spectral Image Database of Icon Paintings
At the cost of added complexity and time, hyperspectral imaging provides a more accurate measure of the scene’s irradiance compared to an RGB camera. Several camera designs with more than three channels have been proposed to improve the accuracy. The accuracy is often evaluated based on the estimation quality of the spectral data. Currently, such evaluations are carried out with either simulated data or color charts to relax the spatial registration requirement between the images. To overcome this limitation, this article presents an accurately registered image database of six icon paintings captured with five cameras with different number of channels, ranging from three (RGB) to more than a hundred (hyperspectral camera). Icons are challenging topics because they have complex surfaces that reflect light specularly with a high dynamic range. Two contributions are proposed to tackle this challenge. First, an imaging configuration is carefully arranged to control the specular reflection, confine the dynamic range, and provide a consistent signal-to-noise ratio for all the camera channels. Second, a multi-camera, feature-based registration method is proposed with an iterative outlier removal phase that improves the convergence and the accuracy of the process. The method was tested against three other approaches with different features or registration models.
- 29 August 2019
- Published by MDPI AG in Computation
- Vol. 7 (3) , 47
Open AccessConfiguration and Registration of Multi-Camera Spectral Image Database of Icon Paintings
At the cost of added complexity and time, hyperspectral imaging provides a more accurate measure of the scene’s irradiance compared to an RGB camera. Several camera designs with more than three channels have been proposed to improve the accuracy. The accuracy is often evaluated based on the estimation quality of the spectral data. Currently, such evaluations are carried out with either simulated data or color charts to relax the spatial registration requirement between the images. To overcome this limitation, this article presents an accurately registered image database of six icon paintings captured with five cameras with different number of channels, ranging from three (RGB) to more than a hundred (hyperspectral camera). Icons are challenging topics because they have complex surfaces that reflect light specularly with a high dynamic range. Two contributions are proposed to tackle this challenge. First, an imaging configuration is carefully arranged to control the specular reflection, confine the dynamic range, and provide a consistent signal-to-noise ratio for all the camera channels. Second, a multi-camera, feature-based registration method is proposed with an iterative outlier removal phase that improves the convergence and the accuracy of the process. The method was tested against three other approaches with different features or registration models.
- 29 November 2017
- Published by Springer Nature in Machine Vision and Applications
- Vol. 29 (3) , 415-432
Introducing spectral moment features in analyzing the SpecTex hyperspectral texture database
- 29 November 2017
- Published by Springer Nature in Machine Vision and Applications
- Vol. 29 (3) , 415-432
Introducing spectral moment features in analyzing the SpecTex hyperspectral texture database
- 30 October 2013
- Published by Optica Publishing Group in Journal of the Optical Society of America A
- Vol. 30 (11) , 2444-2454
Link functions and Matérn kernel in the estimation of reflectance spectra from RGB responses
We evaluate three link functions (square root, logit, and copula) and Matérn kernel in the kernel-based estimation of reflectance spectra of the Munsell Matte collection in the 400–700 nm region. We estimate reflectance spectra from RGB camera responses in case of real and simulated responses and show that a combination of link function and a kernel regression model with a Matérn kernel decreases spectral errors when compared to a Gaussian mixture model or kernel regression with the Gaussian kernel. Matérn kernel produces performance similar to the thin plate spline model, but does not require a parametric polynomial part in the model.
- 30 October 2013
- Published by Optica Publishing Group in Journal of the Optical Society of America A
- Vol. 30 (11) , 2444-2454
Link functions and Matérn kernel in the estimation of reflectance spectra from RGB responses
We evaluate three link functions (square root, logit, and copula) and Matérn kernel in the kernel-based estimation of reflectance spectra of the Munsell Matte collection in the 400–700 nm region. We estimate reflectance spectra from RGB camera responses in case of real and simulated responses and show that a combination of link function and a kernel regression model with a Matérn kernel decreases spectral errors when compared to a Gaussian mixture model or kernel regression with the Gaussian kernel. Matérn kernel produces performance similar to the thin plate spline model, but does not require a parametric polynomial part in the model.
- 1 August 2006
- Published by Institute of Electrical and Electronics Engineers (IEEE) in 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)
- Vol. 2006 (1557170X) , 4975-4978
Computational Modeling of Aß Fiber Wind-up
Wind-up, a condition related to chronic pain, is described traditionally as a frequency dependent increase in the excitability of sensory spinal cord neurons, evoked by electrical stimulation of small pain fibers. In this paper, we introduce a computational model on wind-up of large (Abeta) fibers, considering three major mechanisms of wind-up: 1) a feedforward mechanism causing Ca2+ entry, 2) a positive feedback, causing more Ca2+ entry, and 3) a feedforward due to sprouting of Abeta fibers towards the small pain fibers. Our model proposes three different ways for reducing wind-up and shows the most important way to treat the pain
- 1 August 2006
- Published by Institute of Electrical and Electronics Engineers (IEEE) in 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)
- Vol. 2006 (1557170X) , 4975-4978
Computational Modeling of Aß Fiber Wind-up
Wind-up, a condition related to chronic pain, is described traditionally as a frequency dependent increase in the excitability of sensory spinal cord neurons, evoked by electrical stimulation of small pain fibers. In this paper, we introduce a computational model on wind-up of large (Abeta) fibers, considering three major mechanisms of wind-up: 1) a feedforward mechanism causing Ca2+ entry, 2) a positive feedback, causing more Ca2+ entry, and 3) a feedforward due to sprouting of Abeta fibers towards the small pain fibers. Our model proposes three different ways for reducing wind-up and shows the most important way to treat the pain
- 1 August 2006
- Published by Institute of Electrical and Electronics Engineers (IEEE)
- No. 1557170X,p. 4975-4978
Computational Modeling of Aß Fiber Wind-up
Wind-up, a condition related to chronic pain, is described traditionally as a frequency dependent increase in the excitability of sensory spinal cord neurons, evoked by electrical stimulation of small pain fibers. In this paper, we introduce a computational model on wind-up of large (Abeta) fibers, considering three major mechanisms of wind-up: 1) a feedforward mechanism causing Ca2+ entry, 2) a positive feedback, causing more Ca2+ entry, and 3) a feedforward due to sprouting of Abeta fibers towards the small pain fibers. Our model proposes three different ways for reducing wind-up and shows the most important way to treat the pain
- 1 August 2006
- Published by Institute of Electrical and Electronics Engineers (IEEE)
- No. 1557170X,p. 4975-4978
Computational Modeling of Aß Fiber Wind-up
Wind-up, a condition related to chronic pain, is described traditionally as a frequency dependent increase in the excitability of sensory spinal cord neurons, evoked by electrical stimulation of small pain fibers. In this paper, we introduce a computational model on wind-up of large (Abeta) fibers, considering three major mechanisms of wind-up: 1) a feedforward mechanism causing Ca2+ entry, 2) a positive feedback, causing more Ca2+ entry, and 3) a feedforward due to sprouting of Abeta fibers towards the small pain fibers. Our model proposes three different ways for reducing wind-up and shows the most important way to treat the pain