Xianjin Qiu

Exiangsimiao (EXSM) is a high-yield and high-quality indica variety and restorer line. However, its grains are not sufficiently slender. In this study, the long-grain allele of the grain shape gene GL7/GW7 was introgressed into EXSM via marker-assisted selection combined with backcross breeding, and two improved long-grain lines (EXSM-IL1 and EXSM-IL2) were developed. Their background recovery rates reached 96.70% and 97.50%, respectively. Their grain lengths (GLs) and length-to-width ratios (LWRs) were significantly higher than EXSM. The milling quality, especially the head milled rice rate (HMRR), of both improved lines was significantly lower than EXSM. EXSM-IL1 showed no significant difference in grain yield (GY) to EXSM, although both improved lines had shorter total growth duration (TGD), longer panicle length (PL), and a lower seed setting ratio (SSR) and 1000-grain weight (KGW). Six hybrid combinations derived from the improved lines exhibited longer GL, higher LWR and narrower GW than those of the hybrid combinations derived from EXSM. The TGD and KGW of the six hybrid combinations were significantly lower compared with the hybrids from EXSM. Furthermore, the two improved lines carried 41 favorable genes associated with crucial traits. These results provide the basis for rice grain shape improvement and supply long-grain and high-quality breeding lines and restorer lines for rice production in southern China.

Rice yield is a complex quantitative trait. Although a lot of genes for yield have been cloned, their genetic basis remains unknown. In the present study, a set of chromosome segment substitution line population (CSSL) was developed, derived from the indica variety Huanghuazhan as the recipient parent and the Aus variety N22 as the donor parent, and a high-density bin map containing 609 bins was constructed by resequencing. The CSSL population comprised 155 families with an average background recovery rate of 93.02%. Nine yield-related traits, including plant height, panicle number, panicle length, primary branch number, spikelet number per panicle, grain number per panicle, seed setting rate, 1000-grain weight, and grain yield per plant, were evaluated across four environments. The results showed significant differences in yield-related traits between the two parents across four environments. All nine traits showed continuous distribution with transgressive segregation. Spikelet number per panicle, grain number per panicle and 1000-grain weight showed strong correlations with each other, whereas panicle number had weak correlations with them. A total of 80 main-effect quantitative trait loci (QTLs) affecting yield-related traits were identified, among which 13 QTLs were repeatedly detected in multiple environments, 45 QTLs were located in 8 pleiotropic QTL regions, and 47 QTLs showed significant interactions with environments. In addition, 260 pairs of epistatic QTLs underlying yield-related traits were identified, of which 2 pairs stably expressed across different environments, and 11 pairs controlled more than two traits. These findings provide a theoretical basis for clarifying the genetic differentiation between indica and Aus and cloning yield-related genes, and offer valuable gene resources for molecular breeding of high-yield rice varieties.

Paclobutrazol (PBZ) is extensively used to modulate plant architecture in rice. However, its comprehensive effects on grain yield and aroma in aromatic rice have not been thoroughly investigated. This study used the local aromatic rice cultivars (Meixiangzhan 2 and Xiangyaxiangzhan) as experimental materials to evaluate the impacts of foliar-applied PBZ at three concentrations (0 (CK), 150 (T1), and 300 (T2) mg L⁻¹) on grain yield, photosynthetic characteristics, fragrance formation, and radiation use efficiency (RUE). Field experiments revealed that T1 significantly reduced the leaf area index (LAI) by 10.12% and intercepted photosynthetically active radiation (IPAR) by 10.74%, meanwhile significantly increasing SPAD values by 12.94% and net photosynthetic rate (Pn) by 9.95%, leading to improved RUE up to 25.21%. These changes contributed to a larger number of grains per panicle and increased 1000-grain weight, ultimately enhancing grain yield. In contrast, T2 resulted in a sharp reduction by 24.84% in IPAR and a significant decline in Pn by 10.07% during the late grain-filling stage, thus limiting the supply of photosynthetic assimilates, eventually reducing grain yield. PBZ application also significantly elevated 2-acetyl-1-pyrroline (2-AP) content by 28.74% under T1 and 17.51% under T2, compared to the control. The increase in 2-AP was mainly associated with elevated levels of key precursors, including proline, Δ1-pyrroline-5-carboxylic acid, and Δ1-pyrroline. In spite of differences in traits between cultivars, the traits responded to PBZ in the same pattern. These results indicate that foliar application of PBZ at 150 mg L⁻¹ can effectively improve both yield and aroma of aromatic rice, offering a promising cultivation strategy for high-quality aromatic rice production.

Salinity is one of the main environmental factors influencing rice production. Many genes affecting salt tolerance (ST) have been cloned in rice so far. In the present study, four genes negatively regulating ST, including HST1, LRRK1, STRK2, and PC1, were edited by CRISPR-Cas9 technology in six rice varieties (three in indica (xian) and three in japonica (geng) backgrounds), and three two-gene editing combinations, including hst1-lrrk1, hst1-strk2, and hst1-pc1, were created. All combinations of hst1-pc1, hst1-lrrk1, and hst1-strk2 significantly improved the ST of all the tested materials in both xian and geng backgrounds and had much better ST than single-gene editing lines. The combination of hst1-pc1 had the poorest ST in CH70 and 8TX23 backgrounds but showed almost the same level of ST as the combinations of hst1-strk2 and hst1-lrrk1 in the C199S background for 17 days after salinization, which clearly brought out the background effect on ST and its utilization in ST breeding. As a comparison of the recipient varieties, almost all gene-edited lines except hst1-pc1 in the CH70 background showed significantly reduced grain weight owing to reduced seed setting rate in normal conditions. The hst1-strk2 showed the highest level of ST at the seedling stage and a relatively higher grain yield among all the lines; thus, it is feasible to enhance the ST of high-yielding rice varieties by simultaneously gene-editing against the two loci or pyramiding these two alleles with the other major ST genes of rice. Our results provide valuable gene resources and germplasms for improving rice salt tolerance and high yield.

Aromatic rice has gained significant attention due to its high economic and nutritional value. 2-Acetyl-1-pyrroline (2-AP), a key aroma compound in aromatic rice, plays a crucial role in elucidating the aroma characteristics of aromatic rice. However, there is no report on the effect of aromatic rice in rice–potato rotation on aroma characteristics. In order to study the influences of winter-planted potatoes on the yield, quality, and 2-AP biosynthesis of aromatic rice grains, the commonly cultivated aromatic rice variety Meixiangzhan-2 and the potato cultivar Huashu-5 were selected as experimental materials for a three-year consecutive field experiment with different tillage patterns consisting of rice–winter fallow as the control group (CK) and rice–potato rotation as the experimental group (RP). The results indicated that the RP treatment enhanced the soil nutrient content and decreased the bulk density. Compared with CK, RP treatment increased the effective panicle number by 10.88% and grain number per panicle by 8.82%, thereby increasing the yield by 11.99%. Meanwhile, RP treatment improved the brown rice rate by 2.61%, milled rice rate by 4.53%, head milled rice rate by 7.51%, and crude protein content by 6.98%. Regarding 2-AP biosynthesis in grains, in contrast to CK, the RP treatment raised the levels of related precursors (Δ1-pyrroline, Δ1-pyrrolidine-5-carboxylic acid, and proline increased by 8.95%, 18.14%, and 13.75%, respectively) and enzymes (proline dehydrogenase, ornithine transaminase, and diamine oxidase increased by 18.37%, 14.61%, and 11.36%, respectively) in its synthesis pathway, thereby facilitating the accumulation of 2-AP. Furthermore, we also observed a more stable yield and grain 2-AP content in aromatic rice under RP treatment. Overall, with regard to enhancing the aromatic rice yield and aroma, the rice–potato rotation system can be contemplated for vigorous promotion.

The phospholipase A (PLA) gene family plays a crucial role in the regulation of plant growth, development and stress response. Although PLA genes have been identified in various plant species, their specific functions and characteristics in oil quality formation of rice grains (Oryza sativa L.) have not been studied yet. Here, we identified and characterized 35 rice PLA genes, which were divided into three subgroups based on gene structures and phylogenetic relationships. These genes are distributed unevenly across 11 rice chromosomes. The promoter sequence of rice PLAs contain multiple plant hormones and stress-related elements. Gene expression analyses in various tissues and under stress conditions indicated that PLAs may be involved in rice growth, development and stress response. In addition, metabolomics, transcriptomics and qRT-PCR analyses between two rice varieties Guang8B (G8B, high oil content) and YueFengB (YFB, low oil content) revealed that the different expressional levels of rice PLA genes were closely related to the differences in the oil content between ‘G8B’ and ‘YFB’ grains. The findings of this study provide potential novel insights into the molecular information of the phospholipase A gene family in rice, and underscore the potential functions of PLA genes in rice oil content accumulation, providing valuable resources for future genetic improvement and breeding strategies.

Chalkiness is an important grain quality trait in rice. Chalk5, encoding a vacuolar H⁺-translocating pyrophosphatase, is a major gene affecting both the percentage of grains with chalkiness (PGWC) and chalkiness degree (DEC) in rice. Reducing its expression can decrease both PGEC and DEC. In this study, the first exon of Chalk5 was edited in the elite restorer line 9311 using the CRISPR/Cas9 system and two knockout mutants were obtained, one of which did not contain the exogenous Cas9 cassette. PGWC and DEC were both significantly reduced in both mutants, while the seed setting ratio (SSR) was also significantly decreased. Staggered sowing experiments showed that the chalkiness of the mutants was insensitive to temperature during the grain-filling stage, and the head milled rice rate (HMRR) could be improved even under high-temperature conditions. Finally, in the hybrid background, the mutants showed significantly reduced PGWC and DEC without changes in other agronomic traits. The results provide important germplasm and allele resources for breeding high-yield rice varieties with superior quality, especially for high-yield indica hybrid rice varieties with superior quality in high-temperature conditions.