Youcheng Yu
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Research Interests
Youcheng Yu has a total of 132 co-authors. Here are the top co-authors by number of shared publications:
Yang Sun
Department of Stomatology, Zhongshan Hospital, Fudan University
17 shared publicationsWei Bi
Department of Stomatology, Zhongshan Hospital of Fudan University, Shanghai, China
10 shared publicationsXingwen Wu
Department of Stomatology, Zhongshan Hospital, Fudan University, Shanghai, China
10 shared publicationsFei Yang
Department of Stomatology, Zhongshan Hospital, Fudan University, Shanghai, China
8 shared publicationsQianrong Zhou
Department of Stomatology, Zhongshan Hospital, Fudan University, Shanghai, China
8 shared publications- Fei Yang
Department of Stomatology, Zhongshan Hospital, Fudan University, Shanghai, China
7 shared publications
Latest Publications
- Open Access
- 28 October 2026
- Published by Taylor & Francis in Journal of Oral Microbiology
- Vol. 18 (1)
Why does apical periodontitis persist? A shotgun metagenomic survey of the microbial community in primary and persistent periapical granulomas
Apical periodontitis (AP) is an inflammatory disease caused by microbial infection in the root canal system. It is estimated that AP affects up to 52% of the worldwide population [1]. Approximately...
- 28 October 2026
- Published by Taylor & Francis in Journal of Oral Microbiology
- Vol. 18 (1)
Open AccessWhy does apical periodontitis persist? A shotgun metagenomic survey of the microbial community in primary and persistent periapical granulomas
Apical periodontitis (AP) is an inflammatory disease caused by microbial infection in the root canal system. It is estimated that AP affects up to 52% of the worldwide population [1]. Approximately...
- Open Access
- 24 November 2025
- Published by Springer Nature in BMC Oral Health
- Vol. 25 (1) , 1830
Impact of small antral pseudocyst interventions on bone remodeling during sinus floor elevation: a retrospective analysis
The study aims to assess the effects of different treatments on postoperative hard tissue surrounding implants. This will be achieved through a retrospective analysis of patients with small antral pseudocysts (APs) measuring 20 mm or less, who received various management strategies for APs during lateral maxillary sinus floor elevation (LSFE). This retrospective study examined 107 patients who underwent LSFE with concurrent implant placement, categorized into removal, aspiration, and untreated groups. The three-dimensional volumetric change rate of the bone graft within the maxillary sinus, the endo-sinus bone gain (ESBG), apical bone height (ABH), and peri-implant bone height (PBH) were assessed to quantify bone volume change. The marginal bone loss (MBL) and implant failure rate were evaluated to compare the success rates of implant surgery. All implants demonstrated functionality without any failure or occurrences of sinusitis. Six months after surgery, the untreated group exhibited a significant reduction in bone graft volume (-18.31% [-19.72%, -15.24%]) compared to the removal group (-14.11% [-17.42%, -11.05%]) and the aspiration group (-16.55% [-18.71%, -11.83%]) (P < .001), alongside greater changes in ESBG and ABH (P < .01). PBH and MBL exhibited comparable values across the groups. Over a period of two years, bone graft stability was maintained, whereas, PBH exhibited a significant increase from six months to one year. The findings of our study suggested that in LSFE, routine removal of small APs (diameter ≤ 20 mm), might be not required. A conservative treatment strategy for APs was advised to streamline the surgical procedure and enhance the success rate of implantation.
- 24 November 2025
- Published by Springer Nature in BMC Oral Health
- Vol. 25 (1) , 1830
Open AccessImpact of small antral pseudocyst interventions on bone remodeling during sinus floor elevation: a retrospective analysis
The study aims to assess the effects of different treatments on postoperative hard tissue surrounding implants. This will be achieved through a retrospective analysis of patients with small antral pseudocysts (APs) measuring 20 mm or less, who received various management strategies for APs during lateral maxillary sinus floor elevation (LSFE). This retrospective study examined 107 patients who underwent LSFE with concurrent implant placement, categorized into removal, aspiration, and untreated groups. The three-dimensional volumetric change rate of the bone graft within the maxillary sinus, the endo-sinus bone gain (ESBG), apical bone height (ABH), and peri-implant bone height (PBH) were assessed to quantify bone volume change. The marginal bone loss (MBL) and implant failure rate were evaluated to compare the success rates of implant surgery. All implants demonstrated functionality without any failure or occurrences of sinusitis. Six months after surgery, the untreated group exhibited a significant reduction in bone graft volume (-18.31% [-19.72%, -15.24%]) compared to the removal group (-14.11% [-17.42%, -11.05%]) and the aspiration group (-16.55% [-18.71%, -11.83%]) (P < .001), alongside greater changes in ESBG and ABH (P < .01). PBH and MBL exhibited comparable values across the groups. Over a period of two years, bone graft stability was maintained, whereas, PBH exhibited a significant increase from six months to one year. The findings of our study suggested that in LSFE, routine removal of small APs (diameter ≤ 20 mm), might be not required. A conservative treatment strategy for APs was advised to streamline the surgical procedure and enhance the success rate of implantation.
- Open Access
- 1 November 2025
- Published by Elsevier in Materials Today Bio
- Vol. 35, 102461
The injectable cationic double-crosslinked hydrogel facilitates bone regeneration and repair through sustained antibacterial activity
- 1 November 2025
- Published by Elsevier in Materials Today Bio
- Vol. 35, 102461
Open AccessThe injectable cationic double-crosslinked hydrogel facilitates bone regeneration and repair through sustained antibacterial activity
- Open Access
- 25 December 2024
- Published by Elsevier in Materials Today Bio
- Vol. 30, 101418
A novel ultrasound-driven piezoelectric GBR membrane dispersed with boron nitride nanotubes promotes bone regeneration and anti-bacterial properties
- 25 December 2024
- Published by Elsevier in Materials Today Bio
- Vol. 30, 101418
Open AccessA novel ultrasound-driven piezoelectric GBR membrane dispersed with boron nitride nanotubes promotes bone regeneration and anti-bacterial properties
- Open Access
- 30 July 2024
- Published by American Society for Microbiology in mSphere
- Vol. 9 (7) , e0005924
Microbiological and functional traits of peri-implant mucositis and correlation with disease severity
Osseointegrated dental implants replace missing teeth and create an artificial surface for biofilms of complex microbial communities to grow. These biofilms on implants and dental surfaces can trigger infection and inflammation in the surrounding tissue. This study investigated the microbial characteristics of peri-implant mucositis (PM) and explored the correlation between microbial ecological imbalance, community function, and disease severity by comparing the submucosal microflora from PM with those of healthy inter-subject implants and intra-subject gingivitis (G) within a group of 32 individuals. We analyzed submucosal plaques from PM, healthy implant (HI), and G sites using metagenome shotgun sequencing. The bacterial diversity of HIs was higher than that of PM, according to the Simpson index. Beta diversity revealed differences in taxonomic and functional compositions across the groups. Linear discriminant analysis of the effect size identified 15 genera and 37 species as biomarkers that distinguished PM from HIs. Pathways involving cell motility and protein processing in the endoplasmic reticulum were upregulated in PM, while pathways related to the metabolism of cofactors and vitamins were downregulated. Microbial dysbiosis correlated positively with the severity of clinical inflammation measured by the sulcus bleeding index (SBI) in PM. Prevotella and protein processing in the endoplasmic reticulum also correlated positively with the SBI. Our study revealed PM’s microbiological and functional traits and suggested the importance of certain functions in disease severity. IMPORTANCE: Peri-implant mucositis is an early stage in the progression of peri-implantitis. The high prevalence of it has been a threat to the widespread use of implant prosthodontics. The link between the submucosal microbiome and peri-implant mucositis was demonstrated previously. Nevertheless, the taxonomic and functional composition of the peri-implant mucositis microbiome remains controversial. In this study, we comprehensively characterize the microbial signature of peri-implant mucositis and for the first time, we investigate the correlations between microbial dysbiosis, functional potential, and disease severity. With the help of metagenomic sequencing, we find the positive correlations between microbial dysbiosis, genus Prevotella , pathway of protein processing in the endoplasmic reticulum, and more severe mucosal bleeding in the peri-implant mucositis. Our studies offer insight into the pathogenesis of peri-implant mucositis by providing information on the relationships between community function and disease severity.
- 30 July 2024
- Published by American Society for Microbiology in mSphere
- Vol. 9 (7) , e0005924
Open AccessMicrobiological and functional traits of peri-implant mucositis and correlation with disease severity
Osseointegrated dental implants replace missing teeth and create an artificial surface for biofilms of complex microbial communities to grow. These biofilms on implants and dental surfaces can trigger infection and inflammation in the surrounding tissue. This study investigated the microbial characteristics of peri-implant mucositis (PM) and explored the correlation between microbial ecological imbalance, community function, and disease severity by comparing the submucosal microflora from PM with those of healthy inter-subject implants and intra-subject gingivitis (G) within a group of 32 individuals. We analyzed submucosal plaques from PM, healthy implant (HI), and G sites using metagenome shotgun sequencing. The bacterial diversity of HIs was higher than that of PM, according to the Simpson index. Beta diversity revealed differences in taxonomic and functional compositions across the groups. Linear discriminant analysis of the effect size identified 15 genera and 37 species as biomarkers that distinguished PM from HIs. Pathways involving cell motility and protein processing in the endoplasmic reticulum were upregulated in PM, while pathways related to the metabolism of cofactors and vitamins were downregulated. Microbial dysbiosis correlated positively with the severity of clinical inflammation measured by the sulcus bleeding index (SBI) in PM. Prevotella and protein processing in the endoplasmic reticulum also correlated positively with the SBI. Our study revealed PM’s microbiological and functional traits and suggested the importance of certain functions in disease severity. IMPORTANCE: Peri-implant mucositis is an early stage in the progression of peri-implantitis. The high prevalence of it has been a threat to the widespread use of implant prosthodontics. The link between the submucosal microbiome and peri-implant mucositis was demonstrated previously. Nevertheless, the taxonomic and functional composition of the peri-implant mucositis microbiome remains controversial. In this study, we comprehensively characterize the microbial signature of peri-implant mucositis and for the first time, we investigate the correlations between microbial dysbiosis, functional potential, and disease severity. With the help of metagenomic sequencing, we find the positive correlations between microbial dysbiosis, genus Prevotella , pathway of protein processing in the endoplasmic reticulum, and more severe mucosal bleeding in the peri-implant mucositis. Our studies offer insight into the pathogenesis of peri-implant mucositis by providing information on the relationships between community function and disease severity.
- Open Access
- 15 March 2024
- Published by Elsevier in Translational Oncology
- Vol. 44, 101932
Insights into the role of the N6-methyladenosine reader IGF2BP3 in the progression of oral squamous cell carcinoma and its connection to cell-cycle control
- 15 March 2024
- Published by Elsevier in Translational Oncology
- Vol. 44, 101932
Open AccessInsights into the role of the N6-methyladenosine reader IGF2BP3 in the progression of oral squamous cell carcinoma and its connection to cell-cycle control
- Open Access
- 17 January 2024
- Published by Springer Nature in BMC Oral Health
- Vol. 24 (1) , 1-17
Metagenomic analysis of healthy and diseased peri-implant microbiome under different periodontal conditions: a cross-sectional study
Background: Peri-implantitis is a polybacterial infection that can lead to the failure of dental implant rehabilitation. This study aimed to profile the microbiome of the peri-implant plaque and estimate the effect of periodontitis on it among 40 Chinese participants with dental implant prostheses and presenting with varying peri-implant and periodontal health states. Methods: Submucosal plaque samples were collected from four distinct clinical categories based on both their implant and periodontal health status at sampling point. Clinical examinations of dental implant and remaining teeth were carried out. Metagenomic analysis was then performed. Results: The microbiome of the peri-implantitis sites differed from that of healthy implant sites, both taxonomically and functionally. Moreover, the predominant species in peri-implantitis sites were slightly affected by the presence of periodontitis. T. forsythia, P. gingivalis, T. denticola, and P. endodontalis were consistently associated with peri-implantitis and inflammatory clinical parameters regardless of the presence of periodontitis. Prevotella spp. and P. endodontalis showed significant differences in the peri-implantitis cohorts under different periodontal conditions. The most distinguishing function between diseased and healthy implants is related to flagellar assembly, which plays an important role in epithelial cell invasion. Conclusions: The composition of the peri-implant microbiome varied in the diseased and healthy states of implants and is affected by individual periodontal conditions. Based on their correlations with clinical parameters, certain species are associated with disease and healthy implants. Flagellar assembly may play a vital role in the process of peri-implantitis.
- 17 January 2024
- Published by Springer Nature in BMC Oral Health
- Vol. 24 (1) , 1-17
Open AccessMetagenomic analysis of healthy and diseased peri-implant microbiome under different periodontal conditions: a cross-sectional study
Background: Peri-implantitis is a polybacterial infection that can lead to the failure of dental implant rehabilitation. This study aimed to profile the microbiome of the peri-implant plaque and estimate the effect of periodontitis on it among 40 Chinese participants with dental implant prostheses and presenting with varying peri-implant and periodontal health states. Methods: Submucosal plaque samples were collected from four distinct clinical categories based on both their implant and periodontal health status at sampling point. Clinical examinations of dental implant and remaining teeth were carried out. Metagenomic analysis was then performed. Results: The microbiome of the peri-implantitis sites differed from that of healthy implant sites, both taxonomically and functionally. Moreover, the predominant species in peri-implantitis sites were slightly affected by the presence of periodontitis. T. forsythia, P. gingivalis, T. denticola, and P. endodontalis were consistently associated with peri-implantitis and inflammatory clinical parameters regardless of the presence of periodontitis. Prevotella spp. and P. endodontalis showed significant differences in the peri-implantitis cohorts under different periodontal conditions. The most distinguishing function between diseased and healthy implants is related to flagellar assembly, which plays an important role in epithelial cell invasion. Conclusions: The composition of the peri-implant microbiome varied in the diseased and healthy states of implants and is affected by individual periodontal conditions. Based on their correlations with clinical parameters, certain species are associated with disease and healthy implants. Flagellar assembly may play a vital role in the process of peri-implantitis.
- 3 January 2024
- Published by Wiley in The FASEB Journal
- Vol. 38 (1) , e23390
Single‐cell RNA sequencing reveals the heterogeneity of epithelial cell and fibroblast cells from non‐ to metastatic lymph node OTSCC
Lymph node metastasis (LNM) is one of the common features of oral tongue squamous cell carcinoma (OTSCC). LNM is also taken as a sign of advanced OTSCC and poor survival rate. Recently, single‐cell RNA sequencing has been applied in investigating the heterogeneity of tumor microenvironment and discovering the potential biomarkers for helping the diagnosis and prognosticating. Pathogenesis of LNM in OTSCC remains unknown. Specifically, cancer‐associated fibroblasts (CAFs) and epithelial tumor cells could foster the progression of tumors. Thus, in this study, we aimed to comprehensively analyze the roles of subpopulations of CAFs and epithelial tumor cells in lymph node metastatic OTSCC using the integration of OTSCC single‐cell RNA sequencing datasets. Four distinct subtypes of CAFs, namely vascular CAFs, myofibroblast CAFs, inflammatory CAFs, and growth arrest CAFs were successfully discovered in LNM tumor and confirmed the roles of GAS and PTN pathways in the progression of tumor metastasis. In addition, NKAIN2+ epithelial cells and FN1+ epithelial cells specifically exhibited an upregulation of PTN, NRG, MIF, and SPP1 signaling pathways in the metastatic OTSCC. In doing so, we put forth some potential biomarkers that could be utilized for the purpose of diagnosing and prognosticating OTSCC during its metastatic phase and tried to confirm by immunofluorescence assays.
- 3 January 2024
- Published by Wiley in The FASEB Journal
- Vol. 38 (1) , e23390
Single‐cell RNA sequencing reveals the heterogeneity of epithelial cell and fibroblast cells from non‐ to metastatic lymph node OTSCC
Lymph node metastasis (LNM) is one of the common features of oral tongue squamous cell carcinoma (OTSCC). LNM is also taken as a sign of advanced OTSCC and poor survival rate. Recently, single‐cell RNA sequencing has been applied in investigating the heterogeneity of tumor microenvironment and discovering the potential biomarkers for helping the diagnosis and prognosticating. Pathogenesis of LNM in OTSCC remains unknown. Specifically, cancer‐associated fibroblasts (CAFs) and epithelial tumor cells could foster the progression of tumors. Thus, in this study, we aimed to comprehensively analyze the roles of subpopulations of CAFs and epithelial tumor cells in lymph node metastatic OTSCC using the integration of OTSCC single‐cell RNA sequencing datasets. Four distinct subtypes of CAFs, namely vascular CAFs, myofibroblast CAFs, inflammatory CAFs, and growth arrest CAFs were successfully discovered in LNM tumor and confirmed the roles of GAS and PTN pathways in the progression of tumor metastasis. In addition, NKAIN2+ epithelial cells and FN1+ epithelial cells specifically exhibited an upregulation of PTN, NRG, MIF, and SPP1 signaling pathways in the metastatic OTSCC. In doing so, we put forth some potential biomarkers that could be utilized for the purpose of diagnosing and prognosticating OTSCC during its metastatic phase and tried to confirm by immunofluorescence assays.