Jihoon Lee
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Jihoon Lee has a total of 22 co-authors. Here are the top co-authors by number of shared publications:
- A-Young Shin
Korea Institute of Ocean Science & Technology (KIOST), Busan 49111, Republic of Korea
7 shared publications - Hyi-Seung Lee
Marine Natural Products Chemistry Laboratory, Korea Institute of Ocean Science and Technology, Busan, 49111, Republic of Korea
6 shared publications - Yeon-Ju Lee
Korea Institute of Ocean Science and Technology
5 shared publications - Hee Jae Shin
Marine Natural Products Chemistry Laboratory, Korea Institute of Ocean Science and Technology, 385 Haeyang-ro, Yeongdo-gu, Busan 49111, Republic of Korea
3 shared publications - Jong Seok Lee
Korea Institute of Ocean Science & Technology
3 shared publications - Arang Son
Department of Radiation Oncology, Samsung Medical Center, Seoul 06351, Korea
2 shared publications
Latest Publications
- Open Access
Chemical Characteristics of Synthetic LWTX4 and Paralytic Shellfish Toxins Under Standard Post–Column Oxidation (PCOX) and HILIC–MS/MS Conditions
The analytical characteristics of Lyngbya wollei toxin 4 (LWTX4), a rare derivative of saxitoxin (STX), remain insufficiently documented due to its limited availability. In the present study, therefore, LWTX4 was synthesized using the previously reported synthetic route developed by Looper to elucidate its fundamental chromatographic behavior. Additionally, three other paralytic shellfish toxin analogues, STX, decarbamoyl saxitoxin (dcSTX), and 12-epi-LWTX4, were prepared from a common intermediate. Analysis of synthetic LWTX4 using the AOAC OMA 2011.02 HPLC–PCOX–FLD method yielded a retention time of 19.8 min, which overlapped with that of STX, and revealed that its FLD response was one-fourteenth that of STX. Meanwhile, under the AOAC 2021 HILIC–MS/MS conditions, LWTX4 eluted at 7.29 min, producing major product ions at m/z 205.1204, 182.0926, 164.0822, and 110.0720. These chromatographic and mass spectrometric characteristics provide useful reference data for assessing the possible presence of LWTX4 during PST profiling of biological samples. The synthetic STX and dcSTX exhibited chromatographic behavior consistent with that of their corresponding certified reference materials (CRMs) under the standard HPLC–PCOX conditions, supporting the potential use of synthesis as a complementary approach to the isolation of PSTs from dinoflagellates for the preparation of CRMs.
Open AccessChemical Characteristics of Synthetic LWTX4 and Paralytic Shellfish Toxins Under Standard Post–Column Oxidation (PCOX) and HILIC–MS/MS Conditions
The analytical characteristics of Lyngbya wollei toxin 4 (LWTX4), a rare derivative of saxitoxin (STX), remain insufficiently documented due to its limited availability. In the present study, therefore, LWTX4 was synthesized using the previously reported synthetic route developed by Looper to elucidate its fundamental chromatographic behavior. Additionally, three other paralytic shellfish toxin analogues, STX, decarbamoyl saxitoxin (dcSTX), and 12-epi-LWTX4, were prepared from a common intermediate. Analysis of synthetic LWTX4 using the AOAC OMA 2011.02 HPLC–PCOX–FLD method yielded a retention time of 19.8 min, which overlapped with that of STX, and revealed that its FLD response was one-fourteenth that of STX. Meanwhile, under the AOAC 2021 HILIC–MS/MS conditions, LWTX4 eluted at 7.29 min, producing major product ions at m/z 205.1204, 182.0926, 164.0822, and 110.0720. These chromatographic and mass spectrometric characteristics provide useful reference data for assessing the possible presence of LWTX4 during PST profiling of biological samples. The synthetic STX and dcSTX exhibited chromatographic behavior consistent with that of their corresponding certified reference materials (CRMs) under the standard HPLC–PCOX conditions, supporting the potential use of synthesis as a complementary approach to the isolation of PSTs from dinoflagellates for the preparation of CRMs.
- 22 December 2025
- Published by Elsevier in Phytochemistry
- Vol. 244, 114758
Isolation, structure elucidation, and absolute configuration of 5,6-dioxygenated aaptamine derivatives from the marine sponge Aaptos sp.
- 22 December 2025
- Published by Elsevier in Phytochemistry
- Vol. 244, 114758
Isolation, structure elucidation, and absolute configuration of 5,6-dioxygenated aaptamine derivatives from the marine sponge Aaptos sp.
- Open Access
- 22 July 2025
- Published by American Chemical Society (ACS) in ACS Omega
- Vol. 10 (30) , 33704-33711
Identification of Novel Antimicrobial 2-(Pyrimidin-2-yl)-5-alkyl-pyridazin-3(2H)-one Scaffolds against Klebsiella pneumoniae, Inspired by Luffariellolide
Luffariellolide (1) was previously isolated in useful quantities (>200 mg) from the marine sponge Suberea sp., collected from the Philippines. The intrinsic antibacterial activity of 1 was insignificant; however, 2-(pyridinyl)pyridazinone 2, derived from 1, exhibited considerable activity against . In this study, 12 natural-product-like pyridazinones 3–14 were synthesized by modifying the γ-hydroxylbutyrolactone core of 1. Among them, 2-(5-fluoropyrimidinyl)pyridazinone 11 was 64-fold more potent than 1 against , with a MIC of 2 μg/mL. Using a convergent five-step synthesis, the diterpene side chain of 11 was simplified to a C12 lipid chain and 2-methyl-2-pentene to obtain 20 and 22, respectively, both of which retained the same MIC value as 11. The N-phenylnaphthalen-1-amine (NPN) uptake assays of 20 and 22 revealed their effective permeability to the outer membrane of , comparable to that of the positive control, polymyxin B. This study provides a foundation for future structural optimization of the novel antibacterial 2-(pyrimidin-2-yl)-5-alkyl-pyridazin-3(2H)-one scaffold targeting .
- 22 July 2025
- Published by American Chemical Society (ACS) in ACS Omega
- Vol. 10 (30) , 33704-33711
Open AccessIdentification of Novel Antimicrobial 2-(Pyrimidin-2-yl)-5-alkyl-pyridazin-3(2H)-one Scaffolds against Klebsiella pneumoniae, Inspired by Luffariellolide
Luffariellolide (1) was previously isolated in useful quantities (>200 mg) from the marine sponge Suberea sp., collected from the Philippines. The intrinsic antibacterial activity of 1 was insignificant; however, 2-(pyridinyl)pyridazinone 2, derived from 1, exhibited considerable activity against . In this study, 12 natural-product-like pyridazinones 3–14 were synthesized by modifying the γ-hydroxylbutyrolactone core of 1. Among them, 2-(5-fluoropyrimidinyl)pyridazinone 11 was 64-fold more potent than 1 against , with a MIC of 2 μg/mL. Using a convergent five-step synthesis, the diterpene side chain of 11 was simplified to a C12 lipid chain and 2-methyl-2-pentene to obtain 20 and 22, respectively, both of which retained the same MIC value as 11. The N-phenylnaphthalen-1-amine (NPN) uptake assays of 20 and 22 revealed their effective permeability to the outer membrane of , comparable to that of the positive control, polymyxin B. This study provides a foundation for future structural optimization of the novel antibacterial 2-(pyrimidin-2-yl)-5-alkyl-pyridazin-3(2H)-one scaffold targeting .
- 17 July 2024
- Published by American Chemical Society (ACS) in Journal of Natural Products
- Vol. 87 (7) , 1872-1880
Structure Determination of 1,3-Dioxolane-Containing Lipids from the Marine Sponge Leucetta sp. Using Chiral 1H NMR Analysis of Model Systems
Chemical investigation of n-hexane extract from the marine sponge Leucetta sp. led to the isolation of five new lipids, 1-5, each characterized by a substituted dioxolane core. The structures of 1-5 were established based on the interpretation of NMR and HRESIMS data. To assign the absolute configuration at C-1 ', model systems consisting of diastereomers at C-2, C-4, and C-1 ' of the dioxolane core were prepared from a chiral glycerol dimethylacetal. H-1 NMR inspection of model compounds revealed that a pair of C-1 ' epimers, 11a/c and 11b/d, was indistinguishable, restricting structural assignment by direct comparison of NMR data. In addition, the lack of chromophores in the dioxolane core resulted in unreliable ECD results, with Cotton effects appearing below 190 nm. As an alternative, a chiral NMR method using Eu(hfc)(3) revealed notable lanthanide-induced shifts, allowing the spectroscopic discrimination of 11a/c and ent- 11a/c. Therefore, the absolute configuration of all five new lipids was determined to be 2S, 4S, 1 ' S by direct comparison with the Eu(hfc)(3)-induced H-1 NMR data.
- 17 July 2024
- Published by American Chemical Society (ACS) in Journal of Natural Products
- Vol. 87 (7) , 1872-1880
Structure Determination of 1,3-Dioxolane-Containing Lipids from the Marine Sponge Leucetta sp. Using Chiral 1H NMR Analysis of Model Systems
Chemical investigation of n-hexane extract from the marine sponge Leucetta sp. led to the isolation of five new lipids, 1-5, each characterized by a substituted dioxolane core. The structures of 1-5 were established based on the interpretation of NMR and HRESIMS data. To assign the absolute configuration at C-1 ', model systems consisting of diastereomers at C-2, C-4, and C-1 ' of the dioxolane core were prepared from a chiral glycerol dimethylacetal. H-1 NMR inspection of model compounds revealed that a pair of C-1 ' epimers, 11a/c and 11b/d, was indistinguishable, restricting structural assignment by direct comparison of NMR data. In addition, the lack of chromophores in the dioxolane core resulted in unreliable ECD results, with Cotton effects appearing below 190 nm. As an alternative, a chiral NMR method using Eu(hfc)(3) revealed notable lanthanide-induced shifts, allowing the spectroscopic discrimination of 11a/c and ent- 11a/c. Therefore, the absolute configuration of all five new lipids was determined to be 2S, 4S, 1 ' S by direct comparison with the Eu(hfc)(3)-induced H-1 NMR data.
- Open Access
- 18 November 2022
- Published by MDPI AG in Marine Drugs
- Vol. 20 (11) , 726
Isolation of Scalimides A–L: β-Alanine-Bearing Scalarane Analogs from the Marine Sponge Spongia sp.
A chemical investigation of a methanol extract of Spongia sp., a marine sponge collected from the Philippines, identified 12 unreported scalarane-type alkaloids—scalimides A–L (1–12)—together with two previously described scalarin derivatives. The elucidation of the structure of the scalaranes based on the interpretation of their NMR and HRMS data revealed that 1–12 featured a β-alanine-substituted E-ring but differed from each other through variations in their oxidation states and substitutions occurring at C16, C24, and C25. Evaluation of the antimicrobial activity of 1–12 against several Gram-positive and Gram-negative bacteria showed that 10 and 11 were active against Micrococcus luteus and Bacillus subtilis, respectively, with MIC values ranging from 4 to 16 μg/mL.
- 18 November 2022
- Published by MDPI AG in Marine Drugs
- Vol. 20 (11) , 726
Open AccessIsolation of Scalimides A–L: β-Alanine-Bearing Scalarane Analogs from the Marine Sponge Spongia sp.
A chemical investigation of a methanol extract of Spongia sp., a marine sponge collected from the Philippines, identified 12 unreported scalarane-type alkaloids—scalimides A–L (1–12)—together with two previously described scalarin derivatives. The elucidation of the structure of the scalaranes based on the interpretation of their NMR and HRMS data revealed that 1–12 featured a β-alanine-substituted E-ring but differed from each other through variations in their oxidation states and substitutions occurring at C16, C24, and C25. Evaluation of the antimicrobial activity of 1–12 against several Gram-positive and Gram-negative bacteria showed that 10 and 11 were active against Micrococcus luteus and Bacillus subtilis, respectively, with MIC values ranging from 4 to 16 μg/mL.
- Open Access
- 9 November 2021
- Published by MDPI AG in Marine Drugs
- Vol. 19 (11) , 627
Isolation of Scalarane-Type Sesterterpenoids from the Marine Sponge Dysidea sp. and Stereochemical Reassignment of 12-epi-Phyllactone D/E
The chemical investigation of the marine sponge Dysidea sp., which was collected from Bohol province in the Philippines, resulted in the identification of 15 new scalarane-type sesterterpenoids (1–1 4, 1 6), together with 15 known compounds. The chemical structures of the new compounds were elucidated based on NMR spectroscopy and HRMS. The structure of 12-epi-phyllactone D/E (15) isolated during this study was originally identified in 2007. However, careful inspection of our experimental 13C NMR spectrum revealed considerable discrepancies with the reported data at C-9, C-12, C-14, and C-23, leading to the correction of the reported compound to the C-12 epimer of 15, phyllactone D/E. The biological properties of compounds 1–16 were evaluated using the MDA-MB-231 cancer cell line. Compound 7, which bears a pentenone E-ring, exhibits significant cytotoxicity with a GI50 value of 4.21 μM.
- 9 November 2021
- Published by MDPI AG in Marine Drugs
- Vol. 19 (11) , 627
Open AccessIsolation of Scalarane-Type Sesterterpenoids from the Marine Sponge Dysidea sp. and Stereochemical Reassignment of 12-epi-Phyllactone D/E
The chemical investigation of the marine sponge Dysidea sp., which was collected from Bohol province in the Philippines, resulted in the identification of 15 new scalarane-type sesterterpenoids (1–1 4, 1 6), together with 15 known compounds. The chemical structures of the new compounds were elucidated based on NMR spectroscopy and HRMS. The structure of 12-epi-phyllactone D/E (15) isolated during this study was originally identified in 2007. However, careful inspection of our experimental 13C NMR spectrum revealed considerable discrepancies with the reported data at C-9, C-12, C-14, and C-23, leading to the correction of the reported compound to the C-12 epimer of 15, phyllactone D/E. The biological properties of compounds 1–16 were evaluated using the MDA-MB-231 cancer cell line. Compound 7, which bears a pentenone E-ring, exhibits significant cytotoxicity with a GI50 value of 4.21 μM.
- Open Access
- 30 November 2020
- Published by MDPI AG in Marine Drugs
- Vol. 18 (12) , 607
Oxygenated Theonellastrols: Interpretation of Unusual Chemical Behaviors Using Quantum Mechanical Calculations and Stereochemical Reassignment of 7α-Hydroxytheonellasterol
A total of eight new oxygenated 4-exo-methylene sterols, 1–8, together with one artifact 9 and six known sterols 11–16, were isolated from the marine sponge Theonella swinhoei collected from the Bohol province in Philippines. Structures of sterols 1–8 were determined from 1D and 2D NMR data. Among the sterols, 8α-hydroxytheonellasterol (4) spontaneously underwent an allylic 1,3-hydroxyl shift to produce 15α-hydroxytheonellasterol (9) as an artifact; this was rationalized by quantum mechanical calculations of the transition state. In addition, the 1,2-epoxy alcohol subunit of 8α-hydroxy-14,15-β-epoxytheonellasterol (5) was assigned using the Gauge-Independent Atomic Orbital (GIAO) NMR chemical shift calculations and subsequent DP4+ analysis. Finally, comparison of the 13C chemical shifts of isolated 7α-hydroxytheonellasterol (6) with the reported values revealed significant discrepancies at C-6, C-7, C-8, and C-14, leading to reassignment of the C-7 stereochemistry in the known structure.
- 30 November 2020
- Published by MDPI AG in Marine Drugs
- Vol. 18 (12) , 607
Open AccessOxygenated Theonellastrols: Interpretation of Unusual Chemical Behaviors Using Quantum Mechanical Calculations and Stereochemical Reassignment of 7α-Hydroxytheonellasterol
A total of eight new oxygenated 4-exo-methylene sterols, 1–8, together with one artifact 9 and six known sterols 11–16, were isolated from the marine sponge Theonella swinhoei collected from the Bohol province in Philippines. Structures of sterols 1–8 were determined from 1D and 2D NMR data. Among the sterols, 8α-hydroxytheonellasterol (4) spontaneously underwent an allylic 1,3-hydroxyl shift to produce 15α-hydroxytheonellasterol (9) as an artifact; this was rationalized by quantum mechanical calculations of the transition state. In addition, the 1,2-epoxy alcohol subunit of 8α-hydroxy-14,15-β-epoxytheonellasterol (5) was assigned using the Gauge-Independent Atomic Orbital (GIAO) NMR chemical shift calculations and subsequent DP4+ analysis. Finally, comparison of the 13C chemical shifts of isolated 7α-hydroxytheonellasterol (6) with the reported values revealed significant discrepancies at C-6, C-7, C-8, and C-14, leading to reassignment of the C-7 stereochemistry in the known structure.
- Open Access
- 19 August 2019
- Published by MDPI AG in Marine Drugs
- Vol. 17 (8) , 482
Phenazine Derivatives with Anti-Inflammatory Activity from the Deep-Sea Sediment-Derived Yeast-Like Fungus Cystobasidium laryngis IV17-028
Three new phenazine derivatives (1–3), along with known compounds (4–7) of saphenic acid derivatives, were isolated from a deep-sea sediment-derived yeast-like fungus Cystobasidium larynigs collected from the Indian Ocean. The structures of the new compounds (1–3) were determined by analysis of spectroscopic data, semi-synthesis and comparison of optical rotation values. All the isolated compounds (1–7), except for 2, showed nitric oxide (NO) production inhibitory effect against lipopolysaccharide (LPS)-induced murine macrophage RAW 264.7 cells without cytotoxicity at concentrations up to 30 μg/mL. This is the first report on the yeast-like fungus Cystobasidium laryngis producing phenazines and anti-inflammatory activity of 1–7 including saphenic acid (4).
- 19 August 2019
- Published by MDPI AG in Marine Drugs
- Vol. 17 (8) , 482
Open AccessPhenazine Derivatives with Anti-Inflammatory Activity from the Deep-Sea Sediment-Derived Yeast-Like Fungus Cystobasidium laryngis IV17-028
Three new phenazine derivatives (1–3), along with known compounds (4–7) of saphenic acid derivatives, were isolated from a deep-sea sediment-derived yeast-like fungus Cystobasidium larynigs collected from the Indian Ocean. The structures of the new compounds (1–3) were determined by analysis of spectroscopic data, semi-synthesis and comparison of optical rotation values. All the isolated compounds (1–7), except for 2, showed nitric oxide (NO) production inhibitory effect against lipopolysaccharide (LPS)-induced murine macrophage RAW 264.7 cells without cytotoxicity at concentrations up to 30 μg/mL. This is the first report on the yeast-like fungus Cystobasidium laryngis producing phenazines and anti-inflammatory activity of 1–7 including saphenic acid (4).
- Open Access
Cytotoxic Furan- and Pyrrole-Containing Scalarane Sesterterpenoids Isolated from the Sponge Scalarispongia sp.
Three furan-containing scalarane sesterterpenoids (1–3) and a novel pyrrole-containing analog (4) were isolated from the sponge Scalarispongia species. Compound 3, reported in the literature as a synthetic derivative of furoscalarol 2, was for the first time isolated from a natural source. During the separation performed using a silica column in the presence of methanol, 16-methoxy derivatives (5, 6) were obtained from the unintended reaction of 2. The isolated natural products 3 and 4 and the artifact 5 showed moderate to high cytotoxicity against six human cancer cell lines, whereas compound 6, the C-16 epimer of 5, showed no cytotoxicity at a concentration of 60 μΜ.
Open AccessCytotoxic Furan- and Pyrrole-Containing Scalarane Sesterterpenoids Isolated from the Sponge Scalarispongia sp.
Three furan-containing scalarane sesterterpenoids (1–3) and a novel pyrrole-containing analog (4) were isolated from the sponge Scalarispongia species. Compound 3, reported in the literature as a synthetic derivative of furoscalarol 2, was for the first time isolated from a natural source. During the separation performed using a silica column in the presence of methanol, 16-methoxy derivatives (5, 6) were obtained from the unintended reaction of 2. The isolated natural products 3 and 4 and the artifact 5 showed moderate to high cytotoxicity against six human cancer cell lines, whereas compound 6, the C-16 epimer of 5, showed no cytotoxicity at a concentration of 60 μΜ.
- Open Access
- 4 December 2017
- Published by MDPI AG in Marine Drugs
- Vol. 15 (12) , 379
Three New Cytotoxic Steroidal Glycosides Isolated from Conus pulicarius Collected in Kosrae, Micronesia
Three new sulfated steroidal glycosides (3–5), along with known cholesterol derivatives (1,2), were isolated from the visceral extract of the cone snail Conus pulicarius. The structure of each new compound was elucidated by nuclear magnetic resonance spectroscopy and high-resolution mass spectrometry. The three new compounds exhibited significant in vitro cytotoxicity (GI50 values down to 0.49 μM) against the K562 human leukemia cell line.
- 4 December 2017
- Published by MDPI AG in Marine Drugs
- Vol. 15 (12) , 379
Open AccessThree New Cytotoxic Steroidal Glycosides Isolated from Conus pulicarius Collected in Kosrae, Micronesia
Three new sulfated steroidal glycosides (3–5), along with known cholesterol derivatives (1,2), were isolated from the visceral extract of the cone snail Conus pulicarius. The structure of each new compound was elucidated by nuclear magnetic resonance spectroscopy and high-resolution mass spectrometry. The three new compounds exhibited significant in vitro cytotoxicity (GI50 values down to 0.49 μM) against the K562 human leukemia cell line.