Yongli Cai
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Yongli Cai has a total of 49 co-authors. Here are the top co-authors by number of shared publications:
- Weiming Wang
School of Mathematics and Statistics, Huaiyin Normal University, Huaian, People’s Republic of China
11 shared publications - Daihai He
Department of Applied Mathematics, Hong Kong Polytechnic University, Hong Kong, China
10 shared publications - Shi Zhao
School of Public Health, Tianjin Medical University, Tianjin, China
9 shared publications - Daozhou Gao
Department of Mathematics and Statistics, Cleveland State University, Cleveland, USA
7 shared publications - Maggie Haitian Wang
Center for Clinical Research and Biostatistics, The Jockey Club School of Public Health and Primary Care, The Chinese University of Hong Kong
7 shared publications - Kai Wang
Department of Medical Engineering and Technology, Xinjiang Medical University, Urumqi, China
6 shared publications
Latest Publications
- Open Access
- 1 December 2025
- Published by KEAI Publishing in Infectious Disease Modelling
- Vol. 10 (4) , 1384-1397
Interactive effects of meteorological factors and ambient air pollutants on influenza incidences 2019–2022 in Huaian, China
Influenza is a global public health and economic burden. Its seasonality patterns differ considerably between geographic regions, but the factors underlying these differences are not well characterized. The data on influenza were obtained from 2019 to 2022 in Huaian. A descriptive study was used to describe the epidemiological characteristics.The DLNM(distributed lag nonlinear model) model was established to further analyze the relationship between influenza cases, meteorological factors and pollutants. In addition, the attribution risk analysis and the interaction analysis further explored the interaction between the attributable risk and meteorological factors of influenza in terms of meteorological factors. A total of 9205 cases of influenza were reported in Huaian City from 2019 to 2022, Jiangsu province, of which 4938 cases were males and 4267 cases were females.The DLNM results showed an inverted U-shaped relationship between PM2.5(Fine Particulate Matter) and temperature and influenza.The low concentration of PM2.5 and O3(Ozone) showed decreased risks, and the maximum effect values appeared on the 8th day (RR(Relative Ris) = 0.35,95 %CI(Confidence Interval): 0.25–0.49) and the 2nd day (RR = 0.63,95 %CI: 0.52–0.77). At the high concentration, the cumulative RR values of PM2.5 and O3 reached their maximum on the 8th day (RR = 1.93,95 %CI: 1.47–2.54) and the 9th day (RR = 2.58,95 %CI: 1.63–4.09). The attribution analysis based on DLNM showed that the AF(attributable fraction) value of influenza attributable to the high concentration of PM2.5 exposure was 15.90 %, equivalent to 1456 cases. AF of the high concentration of O3 was 8.12 % (743 cases). The AF of low temperature effect was 30.91 % (2830 cases). The interaction analysis showed that high temperature reduced the influence of PM2.5 on the onset of influenza, showing an antagonistic effect (RR = 0.31, 95 %CI: 0.15–0.65), IRR(interaction relative risk) and RERI(interaction relative risk) were 0.17 (95 %CI: 0.08–0.37) and −1.62 (95 %CI: 2.65∼-0.68), respectively. The results show that low temperature significantly increases the risk of influenza. At the low concentration of PM2.5, the risk of influenza increases with increasing concentration but decreases at the high concentrations. At the high concentration of O3, the risk of influenza increases rapidly. 15.90 % of influenza cases may be attributed to the high concentration of PM2.5, equivalent to 1456 cases; temperature-induced cases mainly come from the low-temperature effect, with an AF value of 30.91 %, equivalent to 2830 cases. In addition, high temperature can effectively mitigate the impact of PM2.5 on influenza incidence, and outdoor exposure time should be minimized in low temperature and high PM2.5 weather.
- 1 December 2025
- Published by KEAI Publishing in Infectious Disease Modelling
- Vol. 10 (4) , 1384-1397
Open AccessInteractive effects of meteorological factors and ambient air pollutants on influenza incidences 2019–2022 in Huaian, China
Influenza is a global public health and economic burden. Its seasonality patterns differ considerably between geographic regions, but the factors underlying these differences are not well characterized. The data on influenza were obtained from 2019 to 2022 in Huaian. A descriptive study was used to describe the epidemiological characteristics.The DLNM(distributed lag nonlinear model) model was established to further analyze the relationship between influenza cases, meteorological factors and pollutants. In addition, the attribution risk analysis and the interaction analysis further explored the interaction between the attributable risk and meteorological factors of influenza in terms of meteorological factors. A total of 9205 cases of influenza were reported in Huaian City from 2019 to 2022, Jiangsu province, of which 4938 cases were males and 4267 cases were females.The DLNM results showed an inverted U-shaped relationship between PM2.5(Fine Particulate Matter) and temperature and influenza.The low concentration of PM2.5 and O3(Ozone) showed decreased risks, and the maximum effect values appeared on the 8th day (RR(Relative Ris) = 0.35,95 %CI(Confidence Interval): 0.25–0.49) and the 2nd day (RR = 0.63,95 %CI: 0.52–0.77). At the high concentration, the cumulative RR values of PM2.5 and O3 reached their maximum on the 8th day (RR = 1.93,95 %CI: 1.47–2.54) and the 9th day (RR = 2.58,95 %CI: 1.63–4.09). The attribution analysis based on DLNM showed that the AF(attributable fraction) value of influenza attributable to the high concentration of PM2.5 exposure was 15.90 %, equivalent to 1456 cases. AF of the high concentration of O3 was 8.12 % (743 cases). The AF of low temperature effect was 30.91 % (2830 cases). The interaction analysis showed that high temperature reduced the influence of PM2.5 on the onset of influenza, showing an antagonistic effect (RR = 0.31, 95 %CI: 0.15–0.65), IRR(interaction relative risk) and RERI(interaction relative risk) were 0.17 (95 %CI: 0.08–0.37) and −1.62 (95 %CI: 2.65∼-0.68), respectively. The results show that low temperature significantly increases the risk of influenza. At the low concentration of PM2.5, the risk of influenza increases with increasing concentration but decreases at the high concentrations. At the high concentration of O3, the risk of influenza increases rapidly. 15.90 % of influenza cases may be attributed to the high concentration of PM2.5, equivalent to 1456 cases; temperature-induced cases mainly come from the low-temperature effect, with an AF value of 30.91 %, equivalent to 2830 cases. In addition, high temperature can effectively mitigate the impact of PM2.5 on influenza incidence, and outdoor exposure time should be minimized in low temperature and high PM2.5 weather.
- Open Access
- 12 October 2023
- Published by Springer Nature in Respiratory Research
- Vol. 24 (1) , 1-13
Effectiveness of the booster dose of inactivated COVID-19 vaccine against Omicron BA.5 infection: a matched cohort study of adult close contacts
Background: Although COVID-19 vaccines and their booster regimens protect against symptomatic infections and severe outcomes, there is limited evidence about their protection against asymptomatic and symptomatic infections in real-world settings, particularly when considering that the majority of SARS-CoV-2 Omicron infections were asymptomatic. We aimed to assess the effectiveness of the booster dose of inactivated vaccines in mainland China, i.e., Sinopharm (BBIBP-CorV) and Sinovac (CoronaVac), against Omicron infection in an Omicron BA.5 seeded epidemic.Methods: Based on an infection-naive but highly vaccinated population in Urumqi, China, the study cohort comprised all 37,628 adults who had a contact history with individuals having SARS-CoV-2 infections, i.e., close contacts, between August 1 and September 7, 2022. To actively detect SARS-CoV-2 infections, RT-PCR tests were performed by local authorities on a daily basis for all close contacts, and a testing-positive status was considered a laboratory-confirmed outcome. The cohort of close contacts was matched at a ratio of 1:5 with the fully vaccinated (i.e., 2 doses) and booster vaccinated groups (i.e., 3 doses) according to sex, age strata, calendar date, and contact settings. Multivariate conditional logistic regression models were adopted to estimate the marginal effectiveness of the booster dose against Omicron BA.5 infection after adjusting for confounding variables. Subgroup analyses were performed to assess vaccine effectiveness (VE) in different strata of sex, age, the time lag from the last vaccine dose to exposure, and the vaccination status of the source case. Kaplan–Meier curves were employed to visualize the follow-up process and testing outcomes among different subgroups of the matched cohort.Findings: Before matching, 37,099 adult close contacts were eligible for cohort enrolment. After matching, the 2-dose and 3-dose groups included 3317 and 16,051 contacts, and the proportions with Omicron infections were 1.03% and 0.62% among contacts in the 2-dose and 3-dose groups, respectively. We estimated that the adjusted effectiveness of the inactivated booster vaccine versus 2 doses against Omicron infection was 35.5% (95% CI 2.0, 57.5). The booster dose provided a higher level of protection, with an effectiveness of 60.2% (95% CI 22.8, 79.5) for 15–180 days after vaccination, but this VE decreased to 35.0% (95% CI 2.8, 56.5) after 180 days. Evidence for the protection of the booster dose was detected among young adults aged 18–39 years, but was not detected for those aged 40 years or older.Interpretation: The receipt of the inactivated vaccine booster dose was associated with a significantly lower Omicron infection risk, and our findings confirmed the vaccine effectiveness (VE) of booster doses against Omicron BA.5 variants. Given the rapid evolution of SARS-CoV-2, we highlight the importance of continuously monitoring the protective performance of vaccines against the genetic variants of SARS-CoV-2, regardless of existing vaccine coverage.
- 12 October 2023
- Published by Springer Nature in Respiratory Research
- Vol. 24 (1) , 1-13
Open AccessEffectiveness of the booster dose of inactivated COVID-19 vaccine against Omicron BA.5 infection: a matched cohort study of adult close contacts
Background: Although COVID-19 vaccines and their booster regimens protect against symptomatic infections and severe outcomes, there is limited evidence about their protection against asymptomatic and symptomatic infections in real-world settings, particularly when considering that the majority of SARS-CoV-2 Omicron infections were asymptomatic. We aimed to assess the effectiveness of the booster dose of inactivated vaccines in mainland China, i.e., Sinopharm (BBIBP-CorV) and Sinovac (CoronaVac), against Omicron infection in an Omicron BA.5 seeded epidemic.Methods: Based on an infection-naive but highly vaccinated population in Urumqi, China, the study cohort comprised all 37,628 adults who had a contact history with individuals having SARS-CoV-2 infections, i.e., close contacts, between August 1 and September 7, 2022. To actively detect SARS-CoV-2 infections, RT-PCR tests were performed by local authorities on a daily basis for all close contacts, and a testing-positive status was considered a laboratory-confirmed outcome. The cohort of close contacts was matched at a ratio of 1:5 with the fully vaccinated (i.e., 2 doses) and booster vaccinated groups (i.e., 3 doses) according to sex, age strata, calendar date, and contact settings. Multivariate conditional logistic regression models were adopted to estimate the marginal effectiveness of the booster dose against Omicron BA.5 infection after adjusting for confounding variables. Subgroup analyses were performed to assess vaccine effectiveness (VE) in different strata of sex, age, the time lag from the last vaccine dose to exposure, and the vaccination status of the source case. Kaplan–Meier curves were employed to visualize the follow-up process and testing outcomes among different subgroups of the matched cohort.Findings: Before matching, 37,099 adult close contacts were eligible for cohort enrolment. After matching, the 2-dose and 3-dose groups included 3317 and 16,051 contacts, and the proportions with Omicron infections were 1.03% and 0.62% among contacts in the 2-dose and 3-dose groups, respectively. We estimated that the adjusted effectiveness of the inactivated booster vaccine versus 2 doses against Omicron infection was 35.5% (95% CI 2.0, 57.5). The booster dose provided a higher level of protection, with an effectiveness of 60.2% (95% CI 22.8, 79.5) for 15–180 days after vaccination, but this VE decreased to 35.0% (95% CI 2.8, 56.5) after 180 days. Evidence for the protection of the booster dose was detected among young adults aged 18–39 years, but was not detected for those aged 40 years or older.Interpretation: The receipt of the inactivated vaccine booster dose was associated with a significantly lower Omicron infection risk, and our findings confirmed the vaccine effectiveness (VE) of booster doses against Omicron BA.5 variants. Given the rapid evolution of SARS-CoV-2, we highlight the importance of continuously monitoring the protective performance of vaccines against the genetic variants of SARS-CoV-2, regardless of existing vaccine coverage.
- Open Access
- 1 June 2023
- Published by KEAI Publishing in Infectious Disease Modelling
- Vol. 8 (2) , 390-402
The influence of ambient air pollution on the transmission of tuberculosis in Jiangsu, China
In this paper, based on the statistical data, we investigate the effects of long-term exposure to ambient particulate air pollution on the transmission dynamics of tuberculosis (TB) in Jiangsu, China by studying the threshold dynamics of the TB epidemic model via the statistical data analytically and numerically. The basic reproduction number reveals that TB in Jiangsu, China is an endemic disease and will persist for a long time. And the numerical results show that, in order to control the TB in Jiangsu effectively, we must decrease the depuration coefficient of PM10 in the body, the proportion of TB symptomatic infectious by direct transmission, the reactivation rate of the pre-symptomatic infectious and the effect coefficient of PM10 and MTB inhaled of TB transmission, and increase the uptake coefficient, the recovery rate of the symptomatic/pre-symptomatic infectious and the influence coefficient of PM10 on the body of mortality. Our study shows that PM10 is closely related to the incidence of TB, and the effective control efforts are suggested to focus on increasing close-contact distance and wearing protective mask to decrease the influence of PM10 on the TB transmission, which may shed a new light on understanding the environmental drivers to TB.- 1 June 2023
- Published by KEAI Publishing in Infectious Disease Modelling
- Vol. 8 (2) , 390-402
Open AccessThe influence of ambient air pollution on the transmission of tuberculosis in Jiangsu, China
In this paper, based on the statistical data, we investigate the effects of long-term exposure to ambient particulate air pollution on the transmission dynamics of tuberculosis (TB) in Jiangsu, China by studying the threshold dynamics of the TB epidemic model via the statistical data analytically and numerically. The basic reproduction number reveals that TB in Jiangsu, China is an endemic disease and will persist for a long time. And the numerical results show that, in order to control the TB in Jiangsu effectively, we must decrease the depuration coefficient of PM10 in the body, the proportion of TB symptomatic infectious by direct transmission, the reactivation rate of the pre-symptomatic infectious and the effect coefficient of PM10 and MTB inhaled of TB transmission, and increase the uptake coefficient, the recovery rate of the symptomatic/pre-symptomatic infectious and the influence coefficient of PM10 on the body of mortality. Our study shows that PM10 is closely related to the incidence of TB, and the effective control efforts are suggested to focus on increasing close-contact distance and wearing protective mask to decrease the influence of PM10 on the TB transmission, which may shed a new light on understanding the environmental drivers to TB. - Open Access
- 1 January 2023
- Published by American Institute of Mathematical Sciences (AIMS) in Mathematical Biosciences and Engineering
- Vol. 20 (6) , 10284-10303
The impact of ambient air pollution on an influenza model with partial immunity and vaccination
In this paper, we investigate the effects of ambient air pollution (AAP) on the spread of influenza in an AAP-dependent dynamic influenza model. The value of this study lies in two aspects. Mathematically, we establish the threshold dynamics in the term of the basic reproduction number $ \mathcal{R}_0 $: If $ \mathcal{R}_0 < 1 $, the disease will go to extinction, while if $ \mathcal{R}_0 > 1 $, the disease will persist. Epidemiologically, based on the statistical data in Huaian, China, we find that, in order to control the prevalence of influenza, we must increase the vaccination rate, the recovery rate and the depletion rate, and decrease the rate of the vaccine wearing off, the uptake coefficient, the effect coefficient of AAP on transmission rate and the baseline rate. To put it simply, we must change our traveling plan and stay at home to reduce the contact rate or increase the close-contact distance and wear protective masks to reduce the influence of the AAP on the influenza transmission.- 1 January 2023
- Published by American Institute of Mathematical Sciences (AIMS) in Mathematical Biosciences and Engineering
- Vol. 20 (6) , 10284-10303
Open AccessThe impact of ambient air pollution on an influenza model with partial immunity and vaccination
In this paper, we investigate the effects of ambient air pollution (AAP) on the spread of influenza in an AAP-dependent dynamic influenza model. The value of this study lies in two aspects. Mathematically, we establish the threshold dynamics in the term of the basic reproduction number $ \mathcal{R}_0 $: If $ \mathcal{R}_0 < 1 $, the disease will go to extinction, while if $ \mathcal{R}_0 > 1 $, the disease will persist. Epidemiologically, based on the statistical data in Huaian, China, we find that, in order to control the prevalence of influenza, we must increase the vaccination rate, the recovery rate and the depletion rate, and decrease the rate of the vaccine wearing off, the uptake coefficient, the effect coefficient of AAP on transmission rate and the baseline rate. To put it simply, we must change our traveling plan and stay at home to reduce the contact rate or increase the close-contact distance and wear protective masks to reduce the influence of the AAP on the influenza transmission. - 1 November 2021
- Published by Elsevier in Journal of Theoretical Biology
- Vol. 529, 110861
Shrinkage in serial intervals across transmission generations of COVID-19
- 1 November 2021
- Published by Elsevier in Journal of Theoretical Biology
- Vol. 529, 110861
Shrinkage in serial intervals across transmission generations of COVID-19
- 1 January 2021
- Published by Elsevier in Journal of Theoretical Biology
- Vol. 508, 110453
Modelling the effects of the contaminated environments on tuberculosis in Jiangsu, China
- 1 January 2021
- Published by Elsevier in Journal of Theoretical Biology
- Vol. 508, 110453
Modelling the effects of the contaminated environments on tuberculosis in Jiangsu, China
- Top Cited PapersOpen Access
- 1 April 2020
- Published by Elsevier in International Journal of Infectious Diseases
- Vol. 93, 211-216
A conceptual model for the coronavirus disease 2019 (COVID-19) outbreak in Wuhan, China with individual reaction and governmental action
- 1 April 2020
- Published by Elsevier in International Journal of Infectious Diseases
- Vol. 93, 211-216
Top Cited PapersOpen AccessA conceptual model for the coronavirus disease 2019 (COVID-19) outbreak in Wuhan, China with individual reaction and governmental action
- Open Access
Modelling the coronavirus disease (COVID-19) outbreak on the Diamond Princess ship using the public surveillance data from January 20 to February 20, 2020
The novel coronavirus disease 2019 (COVID-19) outbreak on the Diamond Princess ship has caused over 634 cases as of February 20, 2020. We model the transmission process on the ship with a stochastic model and estimate the basic reproduction number at 2.2 (95%CI: 2.1-2.4). We estimate a large dispersion parameter than other coronaviruses, which implies that the virus is difficult to go extinction. The epidemic doubling time is at 4.6 days (95%CI: 3.0-9.3), and thus timely actions were crucial. The lesson learnt on the ship is generally applicable in other settings.
Open AccessModelling the coronavirus disease (COVID-19) outbreak on the Diamond Princess ship using the public surveillance data from January 20 to February 20, 2020
The novel coronavirus disease 2019 (COVID-19) outbreak on the Diamond Princess ship has caused over 634 cases as of February 20, 2020. We model the transmission process on the ship with a stochastic model and estimate the basic reproduction number at 2.2 (95%CI: 2.1-2.4). We estimate a large dispersion parameter than other coronaviruses, which implies that the virus is difficult to go extinction. The epidemic doubling time is at 4.6 days (95%CI: 3.0-9.3), and thus timely actions were crucial. The lesson learnt on the ship is generally applicable in other settings.