Kenneth James Chapin
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Kenneth James Chapin has a total of 763 co-authors. Here are the top co-authors by number of shared publications:
- Daniel E. Winkler
Department of Ecology and Evolutionary Biology University of California, Irvine Irvine California USA
8 shared publications - Brandon S. Gaut
Department of Ecology and Evolutionary Biology, University of California, Irvine , Irvine, CA 92697
2 shared publications J. David Garmon
Tubb Canyon Desert Conservancy Borrego Springs CA USA
2 shared publications- Mark Briffa
University of Plymouth
2 shared publications - Olivier François
Centre National de la Recherche Scientifique, Université Grenoble-Alpes, Grenoble INP, TIMC UMR 5525, 38000 Grenoble, France
2 shared publications - Paulo Enrique Cardoso Peixoto
Departamento de Genética, Ecologia e Evolução, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais , Belo Horizonte 31270-901
2 shared publications
Latest Publications
- Open Access
- 18 November 2025
- Published by Wiley in Molecular Ecology
- Vol. 34 (24) , e70176
Human‐Mediated Dispersal Routes Structure Sahara Mustard Genomics
Humans have facilitated the spread and evolution of invasive species, a pattern that has accelerated with the globalisation of trade and societal development. Consequently, the invasiveness of a species may be determined not only by how many propagules and which genotypes are introduced, but also by its evolutionary history and how humans have interacted with it. Here, we document the population structure and movement of Sahara mustard ( Brassica tournefortii ) within its native range and its invaded U.S. and Australian ranges. We evaluated 312 individuals spanning 31 sites. We found that Sahara mustard has likely undergone substantial mixing within its native range, with genotypes from Egypt potentially representing a human‐created connection between North African, European and West Asian genotypes. Our results suggest Egypt—and perhaps closely related populations in Morocco and France—as the likely origin of invasive U.S. populations. Australian accessions appear most closely related to those from Qatar and may have acted as a bridgehead and potential source of the most‐recently introduced U.S. population. Further, agricultural varieties from Pakistan and India represent a mix of genotypes from the western part of the species' native range and the eastern site in Qatar. We also identified evidence of mixing of some accessions of crop wild relatives. Nearly all populations sampled display excess heterozygosity and negative inbreeding coefficients, likely indicative of selection and potential admixture with other cultivated Brassica species. Overall, we reconstructed the probable invasion history of Sahara mustard, inferring significant human‐mediated movement of the species within and beyond its native distribution.
- 18 November 2025
- Published by Wiley in Molecular Ecology
- Vol. 34 (24) , e70176
Open AccessHuman‐Mediated Dispersal Routes Structure Sahara Mustard Genomics
Humans have facilitated the spread and evolution of invasive species, a pattern that has accelerated with the globalisation of trade and societal development. Consequently, the invasiveness of a species may be determined not only by how many propagules and which genotypes are introduced, but also by its evolutionary history and how humans have interacted with it. Here, we document the population structure and movement of Sahara mustard ( Brassica tournefortii ) within its native range and its invaded U.S. and Australian ranges. We evaluated 312 individuals spanning 31 sites. We found that Sahara mustard has likely undergone substantial mixing within its native range, with genotypes from Egypt potentially representing a human‐created connection between North African, European and West Asian genotypes. Our results suggest Egypt—and perhaps closely related populations in Morocco and France—as the likely origin of invasive U.S. populations. Australian accessions appear most closely related to those from Qatar and may have acted as a bridgehead and potential source of the most‐recently introduced U.S. population. Further, agricultural varieties from Pakistan and India represent a mix of genotypes from the western part of the species' native range and the eastern site in Qatar. We also identified evidence of mixing of some accessions of crop wild relatives. Nearly all populations sampled display excess heterozygosity and negative inbreeding coefficients, likely indicative of selection and potential admixture with other cultivated Brassica species. Overall, we reconstructed the probable invasion history of Sahara mustard, inferring significant human‐mediated movement of the species within and beyond its native distribution.
- Open Access
- 5 October 2022
- Published by Frontiers Media SA in Frontiers in Conservation Science
- Vol. 3
Evolutionary dynamics inform management interventions of a hanging garden obligate, Carex specuicola
Uncovering the historical and contemporary processes shaping rare species with complex distributions is of growing importance due to threats such as habitat destruction and climate change. Species restricted to specialized, patchy habitat may persist by virtue of life history characteristics facilitating ongoing gene flow and dispersal, but they could also reflect the remnants of formerly widespread, suitable habitat that existed during past climate regimes. If formerly widespread species did not rely upon traits facilitating high dispersibility to persist, contemporary populations could be at high risk of extirpation or extinction. Fortunately, genomic investigations provide an opportunity to illuminate such alternative scenarios while simultaneously offering guidance for future management interventions. Herein, we test the role of these mechanisms in shaping patterns of genomic diversity and differentiation across a highly restricted and rare ecosystem: desert hanging gardens. We focus on Carex specuicola (Cyperaceae), a hanging garden obligate narrowly distributed in the Four Corners region of the southwestern United States that is listed as Threatened under the United States Endangered Species Act. Population structure and diversity analyses reveal that hanging garden populations are shaped by strong genetic drift, but that individuals in gardens are occasionally more closely related to individuals at other gardens than to individuals within the same garden. Similarly, gardens separated by long geographic distances may contain individuals that are more closely related compared to individuals in gardens separated by short geographic distances. Demographic modeling supports historical gene flow between some contemporary garden pairs, which is corroborated by low estimates of inbreeding coefficients and recent divergence times. As such, multiple lines of evidence support dispersal and gene flow across C. specuicola populations at both small and large spatial scales, indicating that even if C. specuicola was formerly more widespread, it may be well suited to persist in hanging gardens so long as suitable habitat remains available. Analyses like those demonstrated herein may be broadly applicable for understanding the short- and long-term evolutionary processes influencing rare species, and especially those having complex distributions across heterogeneous landscapes.
- 5 October 2022
- Published by Frontiers Media SA in Frontiers in Conservation Science
- Vol. 3
Open AccessEvolutionary dynamics inform management interventions of a hanging garden obligate, Carex specuicola
Uncovering the historical and contemporary processes shaping rare species with complex distributions is of growing importance due to threats such as habitat destruction and climate change. Species restricted to specialized, patchy habitat may persist by virtue of life history characteristics facilitating ongoing gene flow and dispersal, but they could also reflect the remnants of formerly widespread, suitable habitat that existed during past climate regimes. If formerly widespread species did not rely upon traits facilitating high dispersibility to persist, contemporary populations could be at high risk of extirpation or extinction. Fortunately, genomic investigations provide an opportunity to illuminate such alternative scenarios while simultaneously offering guidance for future management interventions. Herein, we test the role of these mechanisms in shaping patterns of genomic diversity and differentiation across a highly restricted and rare ecosystem: desert hanging gardens. We focus on Carex specuicola (Cyperaceae), a hanging garden obligate narrowly distributed in the Four Corners region of the southwestern United States that is listed as Threatened under the United States Endangered Species Act. Population structure and diversity analyses reveal that hanging garden populations are shaped by strong genetic drift, but that individuals in gardens are occasionally more closely related to individuals at other gardens than to individuals within the same garden. Similarly, gardens separated by long geographic distances may contain individuals that are more closely related compared to individuals in gardens separated by short geographic distances. Demographic modeling supports historical gene flow between some contemporary garden pairs, which is corroborated by low estimates of inbreeding coefficients and recent divergence times. As such, multiple lines of evidence support dispersal and gene flow across C. specuicola populations at both small and large spatial scales, indicating that even if C. specuicola was formerly more widespread, it may be well suited to persist in hanging gardens so long as suitable habitat remains available. Analyses like those demonstrated herein may be broadly applicable for understanding the short- and long-term evolutionary processes influencing rare species, and especially those having complex distributions across heterogeneous landscapes.
- 20 May 2022
- Published by Springer Nature
- p. 430-433
Arthropod Life History
- 4 March 2022
- Published by Oxford University Press (OUP) in Behavioral Ecology
- Vol. 33 (3) , 549-555
Brood as booty: the effect of colony size and resource value in social insect contests
Animals engage in contests for access to resources like food, mates, and space. Intergroup contests between groups of organisms have received little attention, and it remains unresolved what information groups might use collectively to make contest decisions. We staged whole-colony contests using ant colonies (Temnothorax rugatulus), which perceive conspecific colonies as both a threat and resource from which to steal brood. We recorded individual behaviors and used demographic characteristics as proxies for resource value (number of brood items) and fighting ability (number of workers). We found that ants altered their fighting effort depending on the relative number of workers of their opponent. Although the proximate mechanism for this ability remains uncertain, we found that colonies increased fighting when their opponent had relatively more brood, but not if opposing colonies had relatively many more workers. This suggests that ant colonies can use information about opposing colonies that shapes contest strategies. Further, the behavior of opposing colonies was strongly correlated with each other despite colony size differences ranging from 4% to 51%, consistent with the hypothesis that colonies can use opponent information. The behavior of a distributed, collective system of many individuals, like a eusocial insect colony, thus fits several predictions of contest models designed for individuals if we consider the gain and loss of worker ants analogous to energetic costs accrued during typical dyadic contests.
- 4 March 2022
- Published by Oxford University Press (OUP) in Behavioral Ecology
- Vol. 33 (3) , 549-555
Brood as booty: the effect of colony size and resource value in social insect contests
Animals engage in contests for access to resources like food, mates, and space. Intergroup contests between groups of organisms have received little attention, and it remains unresolved what information groups might use collectively to make contest decisions. We staged whole-colony contests using ant colonies (Temnothorax rugatulus), which perceive conspecific colonies as both a threat and resource from which to steal brood. We recorded individual behaviors and used demographic characteristics as proxies for resource value (number of brood items) and fighting ability (number of workers). We found that ants altered their fighting effort depending on the relative number of workers of their opponent. Although the proximate mechanism for this ability remains uncertain, we found that colonies increased fighting when their opponent had relatively more brood, but not if opposing colonies had relatively many more workers. This suggests that ant colonies can use information about opposing colonies that shapes contest strategies. Further, the behavior of opposing colonies was strongly correlated with each other despite colony size differences ranging from 4% to 51%, consistent with the hypothesis that colonies can use opponent information. The behavior of a distributed, collective system of many individuals, like a eusocial insect colony, thus fits several predictions of contest models designed for individuals if we consider the gain and loss of worker ants analogous to energetic costs accrued during typical dyadic contests.
- Open Access
- 1 December 2020
- Published by Wiley in Ecology and Evolution
- Vol. 10 (24) , 14453-14455
Sahara mustard as a major threat to desert biodiversity in the southwest United States and the need to integrate contemporary methods to understand its biology
- 1 December 2020
- Published by Wiley in Ecology and Evolution
- Vol. 10 (24) , 14453-14455
Open AccessSahara mustard as a major threat to desert biodiversity in the southwest United States and the need to integrate contemporary methods to understand its biology
- Top Cited PapersOpen Access
- 31 December 2019
- Published by Wiley in Global Change Biology
- Vol. 26 (1) , 119-188
TRY plant trait database – enhanced coverage and open access
Plant traits—the morphological, anatomical, physiological, biochemical and phenological characteristics of plants—determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait‐based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits—almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.
- 31 December 2019
- Published by Wiley in Global Change Biology
- Vol. 26 (1) , 119-188
Top Cited PapersOpen AccessTRY plant trait database – enhanced coverage and open access
Plant traits—the morphological, anatomical, physiological, biochemical and phenological characteristics of plants—determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait‐based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits—almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.
- 1 November 2019
- Published by American Arachnological Society in The Journal of Arachnology
- Vol. 47 (3) , 385-388
Guano deposition predicts top predator (Amblypygi: Phrynidae) abundance in subtropical caves
Absence of light is a fundamental characteristic of subterranean ecosystems; thus, productivity must be supported indirectly by influx of detritus from effulgent environments. I examined how this influx impacts the carrying capacity of a cave predator: the whip spider Phrynus longipes (Pocock, 1894). Although solitary, territorial and cannibalistic, this species occurs at extremely high densities in caves. To test the hypothesis that this is an effect of nutrient flow and not cave structure, I examined whether guano deposition at cave entrances predicted estimated population sizes of whip spiders. I found a strong correlation, suggesting that whip spider carrying capacities are at least partly determined by nutrient influx to the cave ecosystem. Larger guano deposits support a larger community of arthropod detritivores, which act as prey to this top predator in a bottom-up effect. This highlights the importance of considering surface environmental and population health along with commercial guano harvesting when studying and conserving caves and the species therein.
- 1 November 2019
- Published by American Arachnological Society in The Journal of Arachnology
- Vol. 47 (3) , 385-388
Guano deposition predicts top predator (Amblypygi: Phrynidae) abundance in subtropical caves
Absence of light is a fundamental characteristic of subterranean ecosystems; thus, productivity must be supported indirectly by influx of detritus from effulgent environments. I examined how this influx impacts the carrying capacity of a cave predator: the whip spider Phrynus longipes (Pocock, 1894). Although solitary, territorial and cannibalistic, this species occurs at extremely high densities in caves. To test the hypothesis that this is an effect of nutrient flow and not cave structure, I examined whether guano deposition at cave entrances predicted estimated population sizes of whip spiders. I found a strong correlation, suggesting that whip spider carrying capacities are at least partly determined by nutrient influx to the cave ecosystem. Larger guano deposits support a larger community of arthropod detritivores, which act as prey to this top predator in a bottom-up effect. This highlights the importance of considering surface environmental and population health along with commercial guano harvesting when studying and conserving caves and the species therein.
- 11 September 2019
- Published by Oxford University Press (OUP) in Behavioral Ecology
- Vol. 30 (5) , 1191-1192
The point of the triangle and utility of repeated measures: a response to comments on Chapin et al
- 11 September 2019
- Published by Oxford University Press (OUP) in Behavioral Ecology
- Vol. 30 (5) , 1191-1192
The point of the triangle and utility of repeated measures: a response to comments on Chapin et al
- 30 July 2019
- Published by Oxford University Press (OUP) in Behavioral Ecology
- Vol. 30 (5) , 1177-1185
Further mismeasures of animal contests: a new framework for assessment strategies
Competition for resources is a ubiquitous feature of life, and a central topic in behavioral ecology. Organisms use assessment strategies to resolve contests, which can be delineated into two broad categories by the information individuals use to make decisions: mutual assessment (MA) or self-assessment (SA). Most research hitherto has worked to bin a species into one of these categories. In this review, we discuss the limitations of this approach and provide solutions. We posit that assessment strategies do not need to be fixed within a species, individuals, or interactions, and that many organisms should adjust their assessment strategy as the environment, opponent, and opportunities for information gathering change. We show that assessment strategies are an individual-level characteristic, can vary within and between contests, and are not mutually exclusive. We argue that MA is the midpoint along a spectrum of self only and opponent only assessment. We discuss the effects of resource distribution, demographics, experience, information transfer, and ontogeny on assessment strategy evolution and behavior. We conclude by providing empirical guidelines and an example with a simulated dataset.
- 30 July 2019
- Published by Oxford University Press (OUP) in Behavioral Ecology
- Vol. 30 (5) , 1177-1185
Further mismeasures of animal contests: a new framework for assessment strategies
Competition for resources is a ubiquitous feature of life, and a central topic in behavioral ecology. Organisms use assessment strategies to resolve contests, which can be delineated into two broad categories by the information individuals use to make decisions: mutual assessment (MA) or self-assessment (SA). Most research hitherto has worked to bin a species into one of these categories. In this review, we discuss the limitations of this approach and provide solutions. We posit that assessment strategies do not need to be fixed within a species, individuals, or interactions, and that many organisms should adjust their assessment strategy as the environment, opponent, and opportunities for information gathering change. We show that assessment strategies are an individual-level characteristic, can vary within and between contests, and are not mutually exclusive. We argue that MA is the midpoint along a spectrum of self only and opponent only assessment. We discuss the effects of resource distribution, demographics, experience, information transfer, and ontogeny on assessment strategy evolution and behavior. We conclude by providing empirical guidelines and an example with a simulated dataset.
- Open Access
- 28 June 2019
- Published by Wiley in Ecology and Evolution
- Vol. 9 (14) , 7928-7941
Multiple introductions and population structure during the rapid expansion of the invasive Sahara mustard (Brassica tournefortii)
The specific mechanisms that result in the success of any species invasion case are difficult to document. Reproductive strategies are often cited as a primary driver of invasive success, with human activities further facilitating invasions by, for example, acting as seed vectors for dispersal via road, train, air, and marine traffic, and by producing efficient corridors for movement including canals, drainages, and roadways. Sahara mustard (Brassica tournefortii) is a facultative autogamous annual native to Eurasia that has rapidly invaded the southwestern United States within the past century, displacing natives, and altering water‐limited landscapes in the southwest. We used a genotyping‐by‐sequencing approach to study the population structure and spatial geography of Sahara mustard from 744 individuals from 52 sites across the range of the species’ invasion. We also used herbaria records to model range expansion since its initial introduction in the 1920s. We found that Sahara mustard occurs as three populations in the United States unstructured by geography, identified three introduction sites, and combined herbaria records with genomic analyses to map the spread of the species. Low genetic diversity and linkage disequilibrium are consistent with self‐fertilization, which likely promoted rapid invasive spread. Overall, we found that Sahara mustard experienced atypical expansion patterns, with a relatively constant rate of expansion and without the lag phase that is typical of many invasive species.
- 28 June 2019
- Published by Wiley in Ecology and Evolution
- Vol. 9 (14) , 7928-7941
Open AccessMultiple introductions and population structure during the rapid expansion of the invasive Sahara mustard (Brassica tournefortii)
The specific mechanisms that result in the success of any species invasion case are difficult to document. Reproductive strategies are often cited as a primary driver of invasive success, with human activities further facilitating invasions by, for example, acting as seed vectors for dispersal via road, train, air, and marine traffic, and by producing efficient corridors for movement including canals, drainages, and roadways. Sahara mustard (Brassica tournefortii) is a facultative autogamous annual native to Eurasia that has rapidly invaded the southwestern United States within the past century, displacing natives, and altering water‐limited landscapes in the southwest. We used a genotyping‐by‐sequencing approach to study the population structure and spatial geography of Sahara mustard from 744 individuals from 52 sites across the range of the species’ invasion. We also used herbaria records to model range expansion since its initial introduction in the 1920s. We found that Sahara mustard occurs as three populations in the United States unstructured by geography, identified three introduction sites, and combined herbaria records with genomic analyses to map the spread of the species. Low genetic diversity and linkage disequilibrium are consistent with self‐fertilization, which likely promoted rapid invasive spread. Overall, we found that Sahara mustard experienced atypical expansion patterns, with a relatively constant rate of expansion and without the lag phase that is typical of many invasive species.