Anne Godfroy

Recent studies have shown the presence of an abiotic electrical current across the walls of deep-sea hydrothermal chimneys, allowing the growth of electroautotrophic microbial communities. To understand the role of the different phylogenetic groups and metabolisms involved, this study focused on electrotrophic enrichment with nitrate as electron acceptor. The biofilm density, community composition, production of organic compounds, and electrical consumption were monitored by FISH confocal microscopy, qPCR, metabarcoding, NMR, and potentiostat measurements. A statistical analysis by PCA showed the correlation between the different parameters (qPCR, organic compounds, and electron acceptors) in three distinct temporal phases. In our conditions, the Archaeoglobales have been shown to play a key role in the development of the community as the first colonizers on the cathode and the first producers of organic compounds, which are then used as an organic source by heterotrophs. Finally, through subcultures of the community, we showed the development of a greater biodiversity over time. This observed phenomenon could explain the biodiversity development in hydrothermal contexts, where energy sources are transient and unstable.

Recent studies have shown the presence of an abiotic electrical current across the walls of deep-sea hydrothermal chimneys, allowing the growth of electroautotrophic microbial communities. To understand the role of the different phylogenetic groups and metabolisms involved, this study focused on an electrotrophic enrichment, with nitrate as electron acceptor. The biofilm density, the community composition, the organic products released, and the electrical consumption were monitored by FISH confocal microscopy, qPCR, Metabarcoding, MNR and potentiostat measurements. A statistic analysis by PCA showed the correlation between the different parameters in 3 distinct temporal phases. The Archaeoglobales have been shown to play a key role in the development of the community, as first colonizers and producing pyruvate, therefor used as organic source for heterotrophs. Some Thermococcales showed the ability to perform electrofermentation of this pyruvate into acetate and H ₂ . Finally, through subcultures of the community, we showed the development of a larger biodiversity over time. This observed phenomenon could explain the biodiversity development in hydrothermal context where energy sources are transient and unstable.

The mixing zone between high‐temperature hydrothermal fluids and seawater produces redox gradients, promoting the development of unique ecosystems based on chemotrophy. The structure of microbial communities depends on their environment, which can vary according to space and time. Hydrothermal circulation within the oceanic crust determines the chemical composition and flow of fluids, depending on underground events (earthquakes, volcanic episodes, etc.) and impacts the development of microbial communities. This link between hydrothermal vent communities and deep geological events is the focus of the present study, the first of its kind for slow‐spreading ridge. In this study, we present a unique set of multidisciplinary data collected from 2008 to 2011 on the Eiffel Tower hydrothermal site (Lucky Strike vent field, Mid‐Atlantic Ridge, MAR). We benefit from continuous geophysical monitoring (temperature and seismicity) of the site, annual sampling of hydrothermal fluids (hot and diffuse) for geochemistry analyses, sampling of hydrothermal chimneys, and an in situ microbial colonization experiment over a year for microbial study. The high CO₂content and concentrations of major elements (Cl, Ca, and Si) and SO₄in the end‐member fluids collected in 2010 indicate that a magmatic degassing occurred between 2009 and 2010 under the Lucky Strike hydrothermal field. This is supported by the large temperature variations observed in March–April 2010. These magmatic CO₂inputs seem to have affected microbial communities colonizing the high‐temperature chimney, as well as the basalts in the more diffuse and mixed zone, promoting the development of thermophilic/anaerobicArchaeaandBacteria(Archaeoglobales, Nautiliales, and Nitratiruptoraceae).

8-oxodeoxyguanosine (8-oxodG), a major oxidised base modification, has been investigated to study its impact on DNA replication in hyperthermophilic Archaea. Here we show that 8-oxodG is formed in the genome of growing cells, with elevated levels following exposure to oxidative stress. Functional characterisation of cell-free extracts and the DNA polymerisation enzymes, PolB, PolD, and the p41/p46 complex, alone or in the presence of accessory factors (PCNA and RPA) indicates that translesion synthesis occurs under replicative conditions. One of the major polymerisation effects was stalling, but each of the individual proteins could insert and extend past 8-oxodG with differing efficiencies. The introduction of RPA and PCNA influenced PolB and PolD in similar ways, yet provided a cumulative enhancement to the polymerisation performance of p41/p46. Overall, 8-oxodG translesion synthesis was seen to be potentially mutagenic leading to errors that are reminiscent of dA:8-oxodG base pairing.

To study the role of exoelectrogens within the trophic network of deep-sea hydrothermal vents, we performed successive subcultures of a hyperthermophilic community from a hydrothermal chimney sample on a mix of electron donors in a microbial fuel cell system. Electrode (the electron acceptor) was swapped every week to enable fresh development from spent media as inoculum. The MFC at 80 °C yielded maximum current production increasing from 159 to 247 mA m⁻² over the subcultures. The experiments demonstrated direct production of electric current from acetate, pyruvate, and H₂ and indirect production from yeast extract and peptone through the production of H₂ and acetate from fermentation. The microorganisms found in on-electrode communities were mainly affiliated to exoelectrogenic Archaeoglobales and Thermococcales species, whereas in liquid media, the communities were mainly affiliated to fermentative Bacillales and Thermococcales species. The work shows interactions between fermentative microorganisms degrading complex organic matter into fermentation products that are then used by exoelectrogenic microorganisms oxidizing these reduced compounds while respiring on a conductive support. The results confirmed that with carbon cycling, the syntrophic relations between fermentative microorganisms and exoelectrogens could enable some microbes to survive as biofilm in extremely unstable conditions.

This study provides an analysis of vesicomyid bivalve–symbiont community distribution across cold seep and hydrothermal vent areas in the Guaymas Basin (Gulf of California, Mexico). Using a combination of morphological and molecular approaches including fluorescent in situ hybridization (FISH), and electronic microscopy observations, vesicomyid clam species and their associated symbionts were characterized and results were analyzed in light of geochemical conditions and other on‐site observations. A greater diversity of vesicomyids was found at cold seep areas, where three different species were present (Phreagena soyoae [syn. kilmeri], Archivesica gigas, and Calyptogena pacifica). In contrast, A. gigas was the only species sampled across the hydrothermal vent area. The same haplotype of A. gigas was found in both hydrothermal vent and cold seep areas, highlighting possible contemporary exchanges among neighboring vents and seeps. In either ecosystem, molecular characterization of the symbionts confirmed the specificity between symbionts and hosts and supported the hypothesis of a predominantly vertical transmission. In addition, patterns of clams could reflect potential niche preferences for each species. The occurrence of numerous traces of vesicomyid movements on sediments in the sites colonized by A. gigas seemed to indicate that this species might have a better ability to move. Furthermore, variation in gill sulfur content could reveal a higher plasticity and sulfur storage capacity in A. gigas. Thus, the distribution of vesicomyid species across the chemosynthetic areas of the Guaymas Basin could be explained by differences in biological traits of the vesicomyid species that would allow A. gigas to more easily exploit transient and punctual sources of available sulfide than P. soyoae.

Insights into the factors controlling fluid circulation through the crust and the nature of fluid venting at the seafloor are first steps in understanding their effect on ocean properties and climate change. New data on the seafloor morphology, sub-surface sedimentary stratification, and water column of the sedimented Southern Trough hydrothermal field (Guaymas basin) were acquired during the BIG cruise in 2010. These data provide accurate and high-resolution information on the geological context of the vents, on the distribution of acoustic anomalies in the water column, and on the possible nature of the fluid generating these echoes. More than 40 hydrothermal edifices were observed. The southern zone of the study area hosts hydrothermal sites that differ from the northern area. The southern vents are located inside or at the edge of small sub-circular depressions and the relationship between active edifices and collapsed areas involves different steps in the continous hydrothermal setting. Sub-bottom data show surface and sub-surface events, with some reflection layers possibly indicating subsurface hydrothermal precipitates or lithification with an estimated age of approximately 10 000 to 20 000 years. Based on the position and maximum altitude of the acoustic anomalies above the seafloor, two types of fluid emission echoes are distinguished: 1) anomalies reaching a maximal altitude of ∼350 m above the seafloor and seen both at the northern and southern fields and 2) strong, narrow and straight anomalies reaching 1334 or 1702 m above the seafloor that are only present in the southern hydrothermal fields of the studied area. We suggest that there are two types of echoes reflecting different fluid escapes based on the physical conditions of fluid venting and degassing and their relationship to geologic features: hydrothermal fluids or hydrothermal fluid mixed with hydrocarbon gas, oil or condensates rising through the water column. The collapsed depressions observed in the southern part facilitate the release of light hydrocarbon (gas, oil, and condensates) soluble at a high temperature and transported by hydrothermal fluids towards the shallow sedimentary levels where they accumulate. These light hydrocarbons rapidly migrate at high levels in the water column. This contrasts with the northern fields where hydrothermal circulation linked to deeper faults, re-mobilize heavier non-soluble hydrocarbons which do not migrate at high levels in the water column.

While more and more investigations are done to isolate hyperthermophilic exoelectrogenic communities from environments, none have been performed yet on deep-sea hydrothermal vent. Samples of black smoker chimney from Rainbow site on the Atlantic mid-oceanic ridge have been harvested for enriching exoelectrogens in microbial electrolysis cells under hyperthermophilic (80°C) condition. Two enrichments have been performed: one from direct inoculation of crushed chimney and the other one from inoculation of a pre-cultivation on iron (III) oxide. In both experiments, a current production was observed from 2.4 A/m ² to 5.8 A/m ² with a set anode potential of +0.05 vs SHE. Taxonomic affiliation of the exoelectrogen communities obtained exhibited a specific enrichment of Archaea from Thermococcales and Archeoglobales orders on the electrode, even when both inocula were dominated by Bacteria .