Marco Cosme

Climate change is increasing the frequency of wildfires in ecosystems that historically rarely burn, such as wet heaths and peatlands, thereby threatening carbon storage, biodiversity, and ecosystem functioning. We conducted a three-year, multi-level study to assess early post-fire recovery trajectories of soil physicochemical properties, vegetation, and soil microbial communities in a wet peatland–heathland mosaic affected by a flaming wildfire. Using a paired-plot design of burned and adjacent intact plots, we observed immediate spikes in bioavailable nitrogen (NH₄⁺, NO₃ ⁻ ) and phosphorus (P _Olsen ) and a reduction in soil moisture in burned plots, yet two years later these parameters had normalized, indicating rapid abiotic recovery. Vegetation was also strongly altered in the year of the fire, quantifiable by a distinct destruction of herb, moss, tree and litter cover. Although initial regrowth was dominated by a relatively fast resprouting of the graminoid Molinia caerulea , its absolute cover in burned plots never exceeded its cover in intact plots, suggesting this species did not expand post-fire. More typical peatland and wet heath species, including ericoid shrubs and Sphagnum mosses, recovered more gradually but largely returned to pre-fire levels within the timespan of our study, highlighting high vegetation resilience. Soil microbial communities showed contrasting responses. Prokaryotic communities shifted immediately after burning but largely recovered within one year. Fungal communities, however, exhibited stronger and more persistent changes and followed a distinct recovery trajectory shaped by succession of immediate and delayed fungal responders. Overall, pyrophilous and fire-tolerant fungi, such as Coniochaeta spp., increased, as did many presumably generalist or opportunistic saprotrophs. Litter and wood-associated saprotrophs as well as many mycorrhizal taxa, however, declined. Ongoing fungal shifts occurred even after soil chemistry and vegetation had largely returned to baseline, reflecting a temporary decoupling between above- and belowground communities that may have cascading effects on ecosystem functioning. In conclusion, our results reveal differential recovery trajectories across the soil–microbiome–vegetation interface and highlight that seemingly rapid abiotic and aboveground biotic recovery can mask prolonged microbial disruptions. We emphasize the importance of multi-level assessments for understanding ecosystem resilience. Highlights: Soil physicochemistry, vegetation and prokaryotes recovered rapidly after a peatland wildfire Fungal communities lagged behind and followed a slower recovery trajectory The timing and duration of fungal responses to fire varied across taxa and included immediate or delayed as well as short-lived or persistent responders There was a mismatch between vegetation and fungal recovery trajectories, evidenced by a transient post-disturbance decoupling between above- and belowground biotic communities Presumed aboveground recovery can mask prolonged belowground disruptions, with potential implications for decomposition, nutrient cycling, and plant–microbe interactions

Plant microbiomes play crucial roles in nutrient cycling and plant growth, and are shaped by a complex interplay between plants, microbes, and the environment. The role of bacteria as mediators of the 400-million-year-old partnership between the majority of land plants and, arbuscular mycorrhizal (AM) fungi is still poorly understood. Here we test whether AM hyphae-associated bacteria influence the success of the AM symbiosis. Using partitioned microcosms containing field soil, we discovered that AM hyphae and roots selectively assemble their own microbiome from the surrounding soil. In two independent experiments, we identified several bacterial genera, including Devosia , that are consistently enriched on AM hyphae. Subsequently, we isolated 144 pure bacterial isolates from a mycorrhiza-rich sample of extraradical hyphae and isolated Devosia sp. ZB163 as root and hyphal colonizer. We show that this AM-associated bacterium synergistically acts with mycorrhiza on the plant root to strongly promote plant growth, nitrogen uptake, and mycorrhization. Our results highlight that AM fungi do not function in isolation and that the plant-mycorrhiza symbiont can recruit beneficial bacteria that support the symbiosis.

Plant adaptation to drought facilitates major ecological transitions, and will likely play a vital role under looming climate change. Mycorrhizas, i.e. strategic associations between plant roots and soil-borne symbiotic fungi, can exert strong influence on the tolerance to drought of extant plants. Here, I show how mycorrhizal strategy and drought adaptation have been shaping one another throughout the course of plant evolution. To characterize the evolutions of both plant characters, I applied a phylogenetic comparative method using data of 1,638 extant species globally distributed. The detected correlated evolution unveiled gains and losses of drought tolerance occurring at faster rates in lineages with ecto- or ericoid mycorrhizas, which were on average about 15 and 300 times faster than in lineages with the arbuscular mycorrhizal and naked root (non-mycorrhizal alone or with facultatively arbuscular mycorrhizal) strategy, respectively. My study suggests that mycorrhizas can play a key facilitator role in the evolutionary processes of plant adaptation to critical changes in water availability across global climates.

Summary: Plant adaptation to drought facilitates major ecological transitions, and is likely to play a vital role under looming climate change. Mycorrhizas can influence the physiological capacity of plants to tolerate drought. Here, I show how mycorrhizal strategy and drought adaptation shape one another throughout the course of plant evolution. To characterize the evolutions of both plant characters, I applied a phylogenetic comparative method using data of 1,638 extant species globally distributed. The detected correlated evolution unveiled gains and losses of drought tolerance occurring at faster rates in lineages with an ecto- or ericoid mycorrhizal strategy, which were on average about 15 and 300 times quicker than that in lineages with the arbuscular mycorrhizal and naked root (non-mycorrhiza or facultatively arbuscular mycorrhiza) strategy, respectively. Among mycorrhiza shifts, the arbuscular mycorrhiza losses in drought sensitive lineages were more frequent than any symbiont switching or other mutualism breakdown. My study suggests that mycorrhizas play a key facilitator role in the evolutionary process of plant adaptation to critical changes in water availability across global climates.

Key message Overexpression of genes involved in coumarin production and secretion can mitigate mycorrhizal incompatibility in nonhost Arabidopsis plants. The coumarin scopoletin, in particular, stimulates pre-penetration development and metabolism in mycorrhizal fungi. Abstract Although most plants can benefit from mutualistic associations with arbuscular mycorrhizal (AM) fungi, nonhost plant species such as the model Arabidopsis thaliana have acquired incompatibility. The transcriptional response of Arabidopsis to colonization by host-supported AM fungi switches from initial AM recognition to defense activation and plant growth antagonism. However, detailed functional information on incompatibility in nonhost–AM fungus interactions is largely missing. We studied interactions between host-sustained AM fungal networks of Rhizophagus irregularis and 18 Arabidopsis genotypes affected in nonhost penetration resistance, coumarin production and secretion, and defense (salicylic acid, jasmonic acid, and ethylene) and growth hormones (auxin, brassinosteroid, cytokinin, and gibberellin). We demonstrated that root-secreted coumarins can mitigate incompatibility by stimulating fungal metabolism and promoting initial steps of AM colonization. Moreover, we provide evidence that major molecular defenses in Arabidopsis do not operate as primary mechanisms of AM incompatibility nor of growth antagonism. Our study reveals that, although incompatible, nonhost plants can harbor hidden tools that promote initial steps of AM colonization. Moreover, it uncovered the coumarin scopoletin as a novel signal in the pre-penetration dialogue, with possible implications for the chemical communication in plant–mycorrhizal fungi associations.

Summary: Approximately 29% of all vascular plant species are unable to establish an arbuscular mycorrhizal (AM) symbiosis. Despite this, AM fungi (Rhizophagus spp.) are enriched in the root microbiome of the nonhost Arabidopsis thaliana, and Arabidopsis roots become colonized when AM networks nurtured by host plants are available. Here, we investigated the nonhost–AM fungus interaction by analyzing transcriptional changes in Rhizophagus, Arabidopsis and the host plant Medicago truncatula while growing in the same mycorrhizal network. In early interaction stages, Rhizophagus activated the Arabidopsis strigolactone biosynthesis genes CCD7 and CCD8, suggesting that detection of AM fungi is not completely impaired. However, in colonized Arabidopsis roots, fungal nutrient transporter genes GintPT, GintAMT2, GintMST2 and GintMST4, essential for AM symbiosis, were not activated. RNA‐seq transcriptome analysis pointed to activation of costly defenses in colonized Arabidopsis roots. Moreover, Rhizophagus colonization caused a 50% reduction in shoot biomass, but also led to enhanced systemic immunity against Botrytis cinerea. This suggests that early signaling between AM fungi and Arabidopsis is not completely impaired and that incompatibility appears at later interaction stages. Moreover, Rhizophagus‐mediated defenses coincide with reduced Arabidopsis growth, but also with systemic disease resistance, highlighting the multifunctional role of AM fungi in host and nonhost interactions.

Plants face numerous challenges from both aboveground and belowground stressors, and defend themselves against harmful insects and microorganisms in many ways. Because plant responses to biotic stresses are not only local but also systemic, belowground interactions can influence aboveground interactions in both natural and agricultural ecosystems. Arbuscular mycorrhizal fungi (AMF) are soilborne organisms that form symbiotic associations with many plant roots and are thought to play a central role in plant nutrition, growth, and fitness. In the present study, we focused on the influence of AMF on rice defense against pests. We inoculated rice plants with AMF in several field and greenhouse experiments to test whether the interaction of AMF with rice roots changes the resistance of rice against two chewing insects, the rice water weevil (Lissorhoptrus oryzophilus Kuschel, RWW) and the fall armyworm (Spodoptera frugiperda, FAW), and against infection by sheath blight (Rhizoctonia solani, ShB). Both in field and greenhouse experiments, the performance of insects and the pathogen on rice was enhanced when plants were inoculated with AMF. In the field, inoculating rice plants with AMF resulted in higher numbers of RWW larvae on rice roots. In the greenhouse, more RWW first instars emerged from AMF-colonized rice plants than from non-colonized control plants. Weight gains of FAW larvae were higher on rice plants treated with AMF inoculum. Lesion lengths and susceptibility to ShB infection were higher in rice plants colonized by AMF. Although AMF inoculation enhanced the growth of rice plants, the nutritional analyses of root and shoot tissues indicated no major increases in the concentrations of nutrients in rice plants colonized by AMF. The large effects on rice susceptibility to pests in the absence of large effects on plant nutrition suggest that AMF colonization influences other mechanisms of susceptibility (e.g., defense signaling processes). This study represents the first study conducted in the U.S. in rice showing AMF-induced plant susceptibility to several antagonists that specialize on different plant tissues. Given the widespread occurrence of AMF, our findings will help to provide a different perspective into the causal basis of rice systemic resistance/susceptibility to insects and pathogens.

The arbuscular mycorrhizal (AM) symbiosis is functionally important for the nutrition and growth of most terrestrial plants. Nearly all phytohormones are employed by plants to regulate the symbiosis with AM fungi, but the regulatory role of cytokinin (CK) is not well understood. Here, we used transgenic tobacco (Nicotiana tabacum) with a root-specific or constitutive expression of CK-degrading CKX genes and the corresponding wild-type to investigate whether a lowered content of CK in roots or in both roots and shoots influences the interaction with the AM fungus Rhizophagus irregularis. Our data indicates that shoot CK has a positive impact on AM fungal development in roots and on the root transcript level of an AM-responsive phosphate transporter gene (NtPT4). A reduced CK content in roots caused shoot and root growth depression following AM colonization, while neither the uptake of phosphorus or nitrogen nor the root transcript levels of NtPT4 were significantly affected. This suggests that root CK may restrict the C availability from the roots to the fungus thus averting parasitism by AM fungi. Taken together, our study indicates that shoot- and root-borne CK have distinct roles in AM symbiosis. We propose a model illustrating how plants may employ CK to regulate nutrient exchange with the ubiquitous AM fungi.

Summary: Plant–microbe mutualisms can improve plant defense, but the impact of root endophytes on below‐ground herbivore interactions remains unknown. We investigated the effects of the root endophyte Piriformospora indica on interactions between rice (Oryza sativa) plants and its root herbivore rice water weevil (RWW; Lissorhoptrus oryzophilus), and how plant jasmonic acid (JA) and GA regulate this tripartite interaction. Glasshouse experiments with wild‐type rice and coi1‐18 and Eui1‐OX mutants combined with nutrient, jasmonate and gene expression analyses were used to test: whether RWW adult herbivory above ground influences subsequent damage caused by larval herbivory below ground; whether P. indica protects plants against RWW; and whether GA and JA signaling mediate these interactions. The endophyte induced plant tolerance to root herbivory. RWW adults and larvae acted synergistically via JA signaling to reduce root growth, while endophyte‐elicited GA biosynthesis suppressed the herbivore‐induced JA in roots and recovered plant growth. Our study shows for the first time the impact of a root endophyte on plant defense against below‐ground herbivores, adds to growing evidence that induced tolerance may be an important root defense, and implicates GA as a signal component of inducible plant tolerance against biotic stress.