Bingqing Cheng
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Bingqing Cheng has a total of 274 co-authors. Here are the top co-authors by number of shared publications:
- Michele Ceriotti
Laboratory of Computational Science and Modeling, Institut des Matériaux, École Polytechnique Fédérale de Lausanne , 1015 Lausanne
11 shared publications Michele Ceriotti
8 shared publicationsDaniel S. King
Bakar Institute of Digital Materials for the Planet, UC Berkeley, Berkeley, USA
6 shared publicationsDongjin Kim
Department of Chemistry, UC Berkeley, California 94720, USA
6 shared publications- Chris J. Pickard
University of Cambridge
5 shared publications Xiaoyu Wang
Department of Chemistry, UC Berkeley, California 94720, USA
5 shared publications
Latest Publications
- Open Access
- 11 November 2026
- Published by Royal Society of Chemistry (RSC) in Digital Discovery
- Vol. 5 (11) , 4989-5000
Systematic trends in water properties across Jacob's ladder density functionals
Kohn–Sham density functional theory is the workhorse of computational materials science and chemistry, but the optimal choice of exchange–correlation approximation for a given system is often unclear.
- 11 November 2026
- Published by Royal Society of Chemistry (RSC) in Digital Discovery
- Vol. 5 (11) , 4989-5000
Open AccessSystematic trends in water properties across Jacob's ladder density functionals
Kohn–Sham density functional theory is the workhorse of computational materials science and chemistry, but the optimal choice of exchange–correlation approximation for a given system is often unclear.
- Open Access
- 1 September 2026
- Published by Springer Nature in Nature Communications
- Vol. 17 (1)
Hydrogen-helium immiscibility boundary in gas-giant planetary interiors from machine-learning molecular dynamics
The location of the hydrogen-helium (H/He) immiscibility boundary controls whether and where helium rain occurs in giant planets, yet it remains uncertain because high-pressure experiments are challenging and ab initio simulations are limited in system size and simulation time. We map this boundary by computing composition-dependent chemical potentials from large-scale molecular dynamics driven by machine learning potentials trained on three density functional approximations (PBE, vdW-DF, and the hybrid HSE). Across the pressure range of 100-1000 GPa, the demixing temperatures are typically ~ 2000 K lower than previous ab initio simulations using small system sizes, and this discrepancy is larger than the estimated error from the chosen density functionals, machine learning potentials, neglect of nuclear quantum effects, and statistical uncertainties. Fitting the H/He mixing free energy to a Redlich-Kister regular solution model rationalizes the thermodynamic driving force for phase separation, and provides a predictive representation of the boundary. Comparing with current planetary interior profiles indicates that helium rain is plausible in Saturn but unlikely in the warmer interior of Jupiter. Our results narrow the uncertainty in the H/He immiscibility boundary and provide inputs for planetary models that couple demixing, heat transport, and composition gradients in gas giants.
- 1 September 2026
- Published by Springer Nature in Nature Communications
- Vol. 17 (1)
Open AccessHydrogen-helium immiscibility boundary in gas-giant planetary interiors from machine-learning molecular dynamics
The location of the hydrogen-helium (H/He) immiscibility boundary controls whether and where helium rain occurs in giant planets, yet it remains uncertain because high-pressure experiments are challenging and ab initio simulations are limited in system size and simulation time. We map this boundary by computing composition-dependent chemical potentials from large-scale molecular dynamics driven by machine learning potentials trained on three density functional approximations (PBE, vdW-DF, and the hybrid HSE). Across the pressure range of 100-1000 GPa, the demixing temperatures are typically ~ 2000 K lower than previous ab initio simulations using small system sizes, and this discrepancy is larger than the estimated error from the chosen density functionals, machine learning potentials, neglect of nuclear quantum effects, and statistical uncertainties. Fitting the H/He mixing free energy to a Redlich-Kister regular solution model rationalizes the thermodynamic driving force for phase separation, and provides a predictive representation of the boundary. Comparing with current planetary interior profiles indicates that helium rain is plausible in Saturn but unlikely in the warmer interior of Jupiter. Our results narrow the uncertainty in the H/He immiscibility boundary and provide inputs for planetary models that couple demixing, heat transport, and composition gradients in gas giants.
- 12 February 2026
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 164 (6)
Long-range electrostatics for machine learning interatomic potentials is easier than we thought
The lack of long-range electrostatics is a key limitation of modern machine learning interatomic potentials (MLIPs), hindering reliable applications to interfaces, charge-transfer reactions, polar and ionic materials, and biomolecules. In this Perspective, we distill two design principles behind the Latent Ewald Summation framework, which can capture long-range interactions, charges, and electrical response just by learning from standard energy and force training data: (i) use a Coulomb functional form with environment-dependent charges to capture electrostatic interactions, and (ii) avoid explicit training on ambiguous density functional theory partial charges. When both principles are satisfied, substantial flexibility remains: essentially any short-range MLIP can be augmented; charge equilibration schemes can be added when desired; dipoles and Born effective charges can be inferred or fine-tuned; and charge/spin-state embeddings or tensorial targets can be further incorporated. We also discuss current limitations and open challenges. Together, these minimal, physics-guided design rules suggest that incorporating long-range electrostatics into MLIPs is simpler and perhaps more broadly applicable than is commonly assumed.
- 12 February 2026
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 164 (6)
Long-range electrostatics for machine learning interatomic potentials is easier than we thought
The lack of long-range electrostatics is a key limitation of modern machine learning interatomic potentials (MLIPs), hindering reliable applications to interfaces, charge-transfer reactions, polar and ionic materials, and biomolecules. In this Perspective, we distill two design principles behind the Latent Ewald Summation framework, which can capture long-range interactions, charges, and electrical response just by learning from standard energy and force training data: (i) use a Coulomb functional form with environment-dependent charges to capture electrostatic interactions, and (ii) avoid explicit training on ambiguous density functional theory partial charges. When both principles are satisfied, substantial flexibility remains: essentially any short-range MLIP can be augmented; charge equilibration schemes can be added when desired; dipoles and Born effective charges can be inferred or fine-tuned; and charge/spin-state embeddings or tensorial targets can be further incorporated. We also discuss current limitations and open challenges. Together, these minimal, physics-guided design rules suggest that incorporating long-range electrostatics into MLIPs is simpler and perhaps more broadly applicable than is commonly assumed.
- Top Cited Papers
- 11 February 2026
- Published by Springer Nature in Nature Reviews Chemistry
- Vol. 10 (3) , 212-230
Foundation models for atomistic simulation of chemistry and materials
Conventional computational methods for modeling chemical and materials systems are limited by system size and timescale, forcing a trade-off between quantum-mechanical accuracy and the sampling needed for realistic observables. Large language and vision foundation models — pre-trained on massive datasets using transformer architectures — have revolutionized many fields. It is thus interesting to ask whether a foundation model — subject to suitable data, parameter scaling and training — could enable learned simulations of chemistry and materials. Here, we review the field of machine-learned interatomic potentials (MLIPs) and posit that scaling up large and diverse chemical and materials datasets and highly expressive architectures using advanced training strategies should result in models that are: more efficient, transferable, robust to out-of-distribution scenarios, and easier to fine-tune to a variety of downstream physical observables than models trained from scratch on small datasets corresponding to specific, targeted atomistic simulation tasks. We provide specific criteria for creating such large-scale MLIP foundation models, coordinated strategies for their development, evaluation and deployment, and highlight potential emergent capabilities that could transform predictive simulations in chemistry and materials science and accelerate discovery across multiple technological domains.
- 11 February 2026
- Published by Springer Nature in Nature Reviews Chemistry
- Vol. 10 (3) , 212-230
Top Cited PapersFoundation models for atomistic simulation of chemistry and materials
Conventional computational methods for modeling chemical and materials systems are limited by system size and timescale, forcing a trade-off between quantum-mechanical accuracy and the sampling needed for realistic observables. Large language and vision foundation models — pre-trained on massive datasets using transformer architectures — have revolutionized many fields. It is thus interesting to ask whether a foundation model — subject to suitable data, parameter scaling and training — could enable learned simulations of chemistry and materials. Here, we review the field of machine-learned interatomic potentials (MLIPs) and posit that scaling up large and diverse chemical and materials datasets and highly expressive architectures using advanced training strategies should result in models that are: more efficient, transferable, robust to out-of-distribution scenarios, and easier to fine-tune to a variety of downstream physical observables than models trained from scratch on small datasets corresponding to specific, targeted atomistic simulation tasks. We provide specific criteria for creating such large-scale MLIP foundation models, coordinated strategies for their development, evaluation and deployment, and highlight potential emergent capabilities that could transform predictive simulations in chemistry and materials science and accelerate discovery across multiple technological domains.
- Top Cited PapersOpen Access
- 22 December 2025
- Published by Springer Nature in npj Computational Materials
- Vol. 11 (1)
Machine learning interatomic potential can infer electrical response
Modeling the response of material and chemical systems to electric fields remains a longstanding challenge. Machine learning interatomic potentials (MLIPs) offer an efficient and scalable alternative to quantum mechanical methods, but do not by themselves incorporate electrical response. Here, we show that polarization and Born effective charge (BEC) tensors can be directly extracted from long-range MLIPs within the Latent Ewald Summation (LES) framework, solely by learning from energy and force data. Using this approach, we predict the infrared spectra of bulk water under zero or finite external electric fields, ionic conductivities of high-pressure superionic ice, and the phase transition and hysteresis in ferroelectric PbTiO 3 perovskite. This work thus extends the capability of MLIPs to predict electrical response –without training on charges or polarization or BECs– and enables accurate modeling of electric-field-driven processes in diverse systems at scale.
- 22 December 2025
- Published by Springer Nature in npj Computational Materials
- Vol. 11 (1)
Top Cited PapersOpen AccessMachine learning interatomic potential can infer electrical response
Modeling the response of material and chemical systems to electric fields remains a longstanding challenge. Machine learning interatomic potentials (MLIPs) offer an efficient and scalable alternative to quantum mechanical methods, but do not by themselves incorporate electrical response. Here, we show that polarization and Born effective charge (BEC) tensors can be directly extracted from long-range MLIPs within the Latent Ewald Summation (LES) framework, solely by learning from energy and force data. Using this approach, we predict the infrared spectra of bulk water under zero or finite external electric fields, ionic conductivities of high-pressure superionic ice, and the phase transition and hysteresis in ferroelectric PbTiO 3 perovskite. This work thus extends the capability of MLIPs to predict electrical response –without training on charges or polarization or BECs– and enables accurate modeling of electric-field-driven processes in diverse systems at scale.
- Open Access
Long-range electrostatics for machine learning interatomic potentials is easier than we thought
The lack of long-range electrostatics is a key limitation of modern machine learning interatomic potentials (MLIPs), hindering reliable applications to interfaces, charge-transfer reactions, polar and ionic materials, and biomolecules. In this Perspective, we distill two design principles behind the Latent Ewald Summation (LES) framework, which can capture long-range interactions, charges, and electrical response just by learning from standard energy and force training data: (i) use a Coulomb functional form with environment-dependent charges to capture electrostatic interactions, and (ii) avoid explicit training on ambiguous density functional theory (DFT) partial charges. When both principles are satisfied, substantial flexibility remains: essentially any short-range MLIP can be augmented; charge equilibration schemes can be added when desired; dipoles and Born effective charges can be inferred or finetuned; and charge/spin-state embeddings or tensorial targets can be further incorporated. We also discuss current limitations and open challenges. Together, these minimal, physics-guided design rules suggest that incorporating long-range electrostatics into MLIPs is simpler and perhaps more broadly applicable than is commonly assumed.
Open AccessLong-range electrostatics for machine learning interatomic potentials is easier than we thought
The lack of long-range electrostatics is a key limitation of modern machine learning interatomic potentials (MLIPs), hindering reliable applications to interfaces, charge-transfer reactions, polar and ionic materials, and biomolecules. In this Perspective, we distill two design principles behind the Latent Ewald Summation (LES) framework, which can capture long-range interactions, charges, and electrical response just by learning from standard energy and force training data: (i) use a Coulomb functional form with environment-dependent charges to capture electrostatic interactions, and (ii) avoid explicit training on ambiguous density functional theory (DFT) partial charges. When both principles are satisfied, substantial flexibility remains: essentially any short-range MLIP can be augmented; charge equilibration schemes can be added when desired; dipoles and Born effective charges can be inferred or finetuned; and charge/spin-state embeddings or tensorial targets can be further incorporated. We also discuss current limitations and open challenges. Together, these minimal, physics-guided design rules suggest that incorporating long-range electrostatics into MLIPs is simpler and perhaps more broadly applicable than is commonly assumed.
- Top Cited Papers
- 10 December 2025
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 21 (24) , 12709-12724
A Universal Augmentation Framework for Long-Range Electrostatics in Machine Learning Interatomic Potentials
Most current machine learning interatomic potentials (MLIPs) rely on short-range approximations, without explicit treatment of long-range electrostatics. To address this, we recently developed the Latent Ewald Summation (LES) method, which infers electrostatic interactions, polarization, and Born effective charges (BECs), just by learning from energy and force training data. Here, we present LES as a standalone library, compatible with any short-range MLIP, and demonstrate its integration with methods such as MACE, NequIP, Allegro, CACE, CHGNet, and UMA. We benchmark LES-enhanced models on distinct systems, including bulk water, polar dipeptides, and gold dimer adsorption on defective substrates, and show that LES not only captures correct electrostatics but also improves accuracy. Additionally, we scale LES to large and chemically diverse data by training MACELES-OFF on the SPICE set containing molecules and clusters, making a universal MLIP with electrostatics for organic systems, including biomolecules. MACELES-OFF is more accurate than its short-range counterpart (MACE-OFF) trained on the same data set, predicts dipoles and BECs reliably, and has better descriptions of bulk liquids. By enabling efficient long-range electrostatics without directly training on electrical properties, LES paves the way for electrostatic foundation MLIPs.
- 10 December 2025
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 21 (24) , 12709-12724
Top Cited PapersA Universal Augmentation Framework for Long-Range Electrostatics in Machine Learning Interatomic Potentials
Most current machine learning interatomic potentials (MLIPs) rely on short-range approximations, without explicit treatment of long-range electrostatics. To address this, we recently developed the Latent Ewald Summation (LES) method, which infers electrostatic interactions, polarization, and Born effective charges (BECs), just by learning from energy and force training data. Here, we present LES as a standalone library, compatible with any short-range MLIP, and demonstrate its integration with methods such as MACE, NequIP, Allegro, CACE, CHGNet, and UMA. We benchmark LES-enhanced models on distinct systems, including bulk water, polar dipeptides, and gold dimer adsorption on defective substrates, and show that LES not only captures correct electrostatics but also improves accuracy. Additionally, we scale LES to large and chemically diverse data by training MACELES-OFF on the SPICE set containing molecules and clusters, making a universal MLIP with electrostatics for organic systems, including biomolecules. MACELES-OFF is more accurate than its short-range counterpart (MACE-OFF) trained on the same data set, predicts dipoles and BECs reliably, and has better descriptions of bulk liquids. By enabling efficient long-range electrostatics without directly training on electrical properties, LES paves the way for electrostatic foundation MLIPs.
- Open Access
- 21 November 2025
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 122 (48)
Cartesian equivariant representations for learning and understanding molecular orbitals
Qualitative and quantitative orbital properties such as bonding/antibonding character, localization, and orbital energies are critical to how chemists understand reactivity, catalysis, and excited-state behavior. Despite this, representations of orbitals in deep learning models have been very underdeveloped relative to representations of molecular geometries and Hamiltonians. Here, we apply state-of-the-art equivariant deep learning architectures to the task of assigning global labels to orbitals, namely energies characterizations, given the molecular coefficients from Hartree–Fock or density functional theory. The architecture we have developed, the Cartesian Equivariant Orbital Network ( CEONET ), shows how molecular orbital coefficients are readily featurized as equivariant node features common to all graph-based machine-learned potentials. We find that CEONET performs well at predicting difficult quantitative labels such as the orbital energy and orbital entropy. Furthermore, we find that the CEONET representation provides an intuitive latent space for differentiating orbital character for the qualitative assignment of e.g. bonding or antibonding character. In addition to providing a useful representation for further integrating deep learning with electronic structure theory, we expect CEONET to be useful for automatizing and interpreting the results of advanced electronic structure methods such as complete active space self-consistent field theory. In particular, the ability of CEONET to infer multireference character via the orbital entropy paves the way toward the machine-learned selection of active spaces.
- 21 November 2025
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 122 (48)
Open AccessCartesian equivariant representations for learning and understanding molecular orbitals
Qualitative and quantitative orbital properties such as bonding/antibonding character, localization, and orbital energies are critical to how chemists understand reactivity, catalysis, and excited-state behavior. Despite this, representations of orbitals in deep learning models have been very underdeveloped relative to representations of molecular geometries and Hamiltonians. Here, we apply state-of-the-art equivariant deep learning architectures to the task of assigning global labels to orbitals, namely energies characterizations, given the molecular coefficients from Hartree–Fock or density functional theory. The architecture we have developed, the Cartesian Equivariant Orbital Network ( CEONET ), shows how molecular orbital coefficients are readily featurized as equivariant node features common to all graph-based machine-learned potentials. We find that CEONET performs well at predicting difficult quantitative labels such as the orbital energy and orbital entropy. Furthermore, we find that the CEONET representation provides an intuitive latent space for differentiating orbital character for the qualitative assignment of e.g. bonding or antibonding character. In addition to providing a useful representation for further integrating deep learning with electronic structure theory, we expect CEONET to be useful for automatizing and interpreting the results of advanced electronic structure methods such as complete active space self-consistent field theory. In particular, the ability of CEONET to infer multireference character via the orbital entropy paves the way toward the machine-learned selection of active spaces.
- 31 October 2025
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 21 (22) , 11427-11435
Scalable Multitemperature Free Energy Sampling of Classical Ising Spin States
Generative models have advanced significantly in sampling material systems with continuous variables, such as atomistic structures. However, their application to discrete variables, like atom types or spin states, remains underexplored. In this work, we introduce a discrete flow matching model, tailored for systems with discrete phase-space coordinates (e.g., the Ising model or a multicomponent system on a lattice). This approach enables a single model to sample free energy surfaces over a wide temperature range with minimal training overhead, and the model generation is scalable to larger lattice sizes than those in the training set. We demonstrate our approach on the 2D Ising model, showing efficient and reliable free energy sampling. These results highlight the potential of flow matching for low-cost, scalable free energy sampling in discrete systems and suggest promising extensions to alchemical degrees of freedom in crystalline materials. The codebase developed for this work is openly available at https://github.com/tuoping/alchemicalFES.
- 31 October 2025
- Published by American Chemical Society (ACS) in Journal of Chemical Theory and Computation
- Vol. 21 (22) , 11427-11435
Scalable Multitemperature Free Energy Sampling of Classical Ising Spin States
Generative models have advanced significantly in sampling material systems with continuous variables, such as atomistic structures. However, their application to discrete variables, like atom types or spin states, remains underexplored. In this work, we introduce a discrete flow matching model, tailored for systems with discrete phase-space coordinates (e.g., the Ising model or a multicomponent system on a lattice). This approach enables a single model to sample free energy surfaces over a wide temperature range with minimal training overhead, and the model generation is scalable to larger lattice sizes than those in the training set. We demonstrate our approach on the 2D Ising model, showing efficient and reliable free energy sampling. These results highlight the potential of flow matching for low-cost, scalable free energy sampling in discrete systems and suggest promising extensions to alchemical degrees of freedom in crystalline materials. The codebase developed for this work is openly available at https://github.com/tuoping/alchemicalFES.
- Open Access
- 6 October 2025
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 122 (41)
Lattice distortion leads to glassy thermal transport in crystalline Cs 3 Bi 2 I 6 Cl 3
The glassy thermal conductivities observed in crystalline inorganic perovskites such as Cs 3 Bi 2 I 6 Cl 3 are perplexing and lacking theoretical explanations. Here, we first experimentally measure its thermal transport behavior from 20 to 300 K, after synthesizing Cs 3 Bi 2 I 6 Cl 3 single crystals. Using path-integral molecular dynamics simulations driven by machine learning potentials, we reveal that Cs 3 Bi 2 I 6 Cl 3 has large lattice distortions at low temperatures, which may be related to the large atomic size mismatch. Employing the Wigner formulation of thermal transport, we reproduce the experimental thermal conductivities based on lattice-distorted structures. This study thus provides a framework for predicting and understanding glassy thermal transport in materials with strong lattice disorder.
- 6 October 2025
- Published by National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 122 (41)
Open AccessLattice distortion leads to glassy thermal transport in crystalline Cs 3 Bi 2 I 6 Cl 3
The glassy thermal conductivities observed in crystalline inorganic perovskites such as Cs 3 Bi 2 I 6 Cl 3 are perplexing and lacking theoretical explanations. Here, we first experimentally measure its thermal transport behavior from 20 to 300 K, after synthesizing Cs 3 Bi 2 I 6 Cl 3 single crystals. Using path-integral molecular dynamics simulations driven by machine learning potentials, we reveal that Cs 3 Bi 2 I 6 Cl 3 has large lattice distortions at low temperatures, which may be related to the large atomic size mismatch. Employing the Wigner formulation of thermal transport, we reproduce the experimental thermal conductivities based on lattice-distorted structures. This study thus provides a framework for predicting and understanding glassy thermal transport in materials with strong lattice disorder.