Shahrokh Khanizadeh
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Shahrokh Khanizadeh has a total of 317 co-authors. Here are the top co-authors by number of shared publications:
- Marie Thérèse Charles
Department of Biology, Université de Sherbrooke, Sherbrooke, QC, Canada
24 shared publications Yvon Groleau
Agriculture and Agri-Food Canada, Horticultural Research and Development Centre, 430 Gouin Blvd., St-Jean-sur-Richelieu, Quebec, Canada J3B 3E6
18 shared publicationsOdile Carisse
Horticulture Research and Development Centre, Agriculture and Agri-Food Canada , 430 Gouin Blvd, St-Jean-sur-Richelieu, QC, Canada , J3B 3E6
16 shared publicationsClaudine Dubé
15 shared publicationsRong Tsao
Agriculture and Agri-Food Canada, Food Research Centre , 93 Stone Road West, Guelph, ON, Canada , N1G 5C9
13 shared publicationsAudrey Levasseur
Agriculture and Agri-Food Canada (AAFC) , Horticultural Research and Development Center (CRDH) , St-Jean-sur-Richelieu, Quebec, Canada
12 shared publications
Latest Publications
- 5 November 2026
- Published by Elsevier in Plant Science
- Vol. 375
PbMYB57 positively mediates glucose-responsive lignification in pear
- 5 November 2026
- Published by Elsevier in Plant Science
- Vol. 375
PbMYB57 positively mediates glucose-responsive lignification in pear
- Open Access
- 15 October 2026
- Published by Wiley in Plant Biotechnology Journal
PbSnRK1 ‐Mediated Phosphorylation of PbTCP13 Regulates Glucose‐Responsive Lignin Biosynthesis via PbMYB11 During Pear Stone Cell Formation
Stone cell lignification is a key determinant of pear fruit texture and commercial quality, and this process has been reported to be tightly coupled to cellular glucose availability. However, how glucose dose‐dependently targets transcription factor phosphorylation during lignin biosynthesis remains largely unknown. Using yeast two‐hybrid library screening and phosphorylation assays, we found that PbSnRK1, a glucose‐responsive kinase, interacts with and directly phosphorylates PbTCP13, thereby participating in the regulation of stone cell lignification. PbSnRK1 serves as an energy‐status sensor linking glucose signalling to biphasic regulation of lignin metabolism in pear. Under low‐glucose conditions, activated PbSnRK1 phosphorylates the transcription factor PbTCP13 at Ser265, targeting it for 26S proteasome‐mediated degradation and thereby derepressing PbMYB11‐ PbCCR1 cascade associated with lignin biosynthesis. Under high‐glucose conditions, suppressed PbSnRK1 kinase activity results in PbTCP13 protein accumulation, which restricts excessive lignification by both repressing PbCCR1 transcription and physically interacting with PbMYB11 to inhibit its transactivation capacity. This PbSnRK1‐PbTCP13‐PbMYB11 cascade, balanced by glucose concentration, acts as a molecular switch that activates stone cell formation and lignification at low‐glucose levels during early fruit development, while restricting excessive lignification at high‐glucose levels during later stages, providing new mechanistic insights into energy‐coupled secondary wall metabolism in fleshy fruits.
- 15 October 2026
- Published by Wiley in Plant Biotechnology Journal
Open AccessPbSnRK1 ‐Mediated Phosphorylation of PbTCP13 Regulates Glucose‐Responsive Lignin Biosynthesis via PbMYB11 During Pear Stone Cell Formation
Stone cell lignification is a key determinant of pear fruit texture and commercial quality, and this process has been reported to be tightly coupled to cellular glucose availability. However, how glucose dose‐dependently targets transcription factor phosphorylation during lignin biosynthesis remains largely unknown. Using yeast two‐hybrid library screening and phosphorylation assays, we found that PbSnRK1, a glucose‐responsive kinase, interacts with and directly phosphorylates PbTCP13, thereby participating in the regulation of stone cell lignification. PbSnRK1 serves as an energy‐status sensor linking glucose signalling to biphasic regulation of lignin metabolism in pear. Under low‐glucose conditions, activated PbSnRK1 phosphorylates the transcription factor PbTCP13 at Ser265, targeting it for 26S proteasome‐mediated degradation and thereby derepressing PbMYB11‐ PbCCR1 cascade associated with lignin biosynthesis. Under high‐glucose conditions, suppressed PbSnRK1 kinase activity results in PbTCP13 protein accumulation, which restricts excessive lignification by both repressing PbCCR1 transcription and physically interacting with PbMYB11 to inhibit its transactivation capacity. This PbSnRK1‐PbTCP13‐PbMYB11 cascade, balanced by glucose concentration, acts as a molecular switch that activates stone cell formation and lignification at low‐glucose levels during early fruit development, while restricting excessive lignification at high‐glucose levels during later stages, providing new mechanistic insights into energy‐coupled secondary wall metabolism in fleshy fruits.
- Open Access
- 15 September 2026
- Published by Elsevier in Journal of Agriculture and Food Research
- Vol. 31
A PpbZIP4-PpHCT32 regulatory module underlying lignification and stone cell formation in pear fruit
- 15 September 2026
- Published by Elsevier in Journal of Agriculture and Food Research
- Vol. 31
Open AccessA PpbZIP4-PpHCT32 regulatory module underlying lignification and stone cell formation in pear fruit
- Open Access
- 18 August 2026
- Published by Elsevier in Scientia Horticulturae
- Vol. 366
Highly efficient protoplast isolation, fusion and PEG-mediated transient transformation system of pear
- 18 August 2026
- Published by Elsevier in Scientia Horticulturae
- Vol. 366
Open AccessHighly efficient protoplast isolation, fusion and PEG-mediated transient transformation system of pear
- Open Access
- 16 July 2026
- Published by Elsevier in SSRN Electronic Journal
A bZIP4-HCT32 regulatory module underlying lignification and stone cell formation in pear fruit
Fruit texture is a critical determinant of pear fruit quality, consumer acceptance, and market value during both commercialization and postharvest storage. Excessive lignification during fruit development leads to the formation of abundant stone cells, resulting in a coarse texture and reduced eating quality. However, the molecular mechanisms underlying cultivar-dependent variation in stone cell content remain largely unclear. In this study, two pear cultivars with contrasting stone cell contents, Pyrus bretschneideri ’Dangshansu’ and Pyrus pyrifolia ’Kosui’, were used to investigate the transcriptional regulation of lignification and stone cell formation during fruit development. Comparative transcriptome analyses across multiple developmental stages identified a large number of differentially expressed genes between the two cultivars, particularly during the critical period of stone cell formation. Functional enrichment analyses revealed that these genes were mainly associated with phenylpropanoid biosynthesis, secondary cell wall formation, and lignin metabolic processes. Weighted gene co-expression network analysis (WGCNA) further identified stone cell-associated modules and key candidate regulators involved in lignification. Among these candidates, a previously uncharacterized bZIP transcription factor, bZIP4, was identified as a potential regulator of stone cell development. Functional analyses demonstrated that overexpression of bZIP4 significantly promoted lignin deposition and stone cell accumulation in pear callus, transiently transformed pear fruit, and transgenic Arabidopsis plants. Molecular assays showed that bZIP4 directly binds to the promoter of HCT32 and activates its transcription. Consistently, overexpression of HCT32 also resulted in enhanced lignin accumulation and increased stone cell content. Collectively, these findings reveal that the bZIP4-HCT32 regulatory module positively regulates lignification and stone cell formation during pear fruit development. This study provides new insights into the molecular basis of fruit texture formation and identifies promising targets for reducing stone cell content, thereby contributing to the genetic improvement of pear fruit quality and potentially enhancing postharvest performance.
- 16 July 2026
- Published by Elsevier in SSRN Electronic Journal
Open AccessA bZIP4-HCT32 regulatory module underlying lignification and stone cell formation in pear fruit
Fruit texture is a critical determinant of pear fruit quality, consumer acceptance, and market value during both commercialization and postharvest storage. Excessive lignification during fruit development leads to the formation of abundant stone cells, resulting in a coarse texture and reduced eating quality. However, the molecular mechanisms underlying cultivar-dependent variation in stone cell content remain largely unclear. In this study, two pear cultivars with contrasting stone cell contents, Pyrus bretschneideri ’Dangshansu’ and Pyrus pyrifolia ’Kosui’, were used to investigate the transcriptional regulation of lignification and stone cell formation during fruit development. Comparative transcriptome analyses across multiple developmental stages identified a large number of differentially expressed genes between the two cultivars, particularly during the critical period of stone cell formation. Functional enrichment analyses revealed that these genes were mainly associated with phenylpropanoid biosynthesis, secondary cell wall formation, and lignin metabolic processes. Weighted gene co-expression network analysis (WGCNA) further identified stone cell-associated modules and key candidate regulators involved in lignification. Among these candidates, a previously uncharacterized bZIP transcription factor, bZIP4, was identified as a potential regulator of stone cell development. Functional analyses demonstrated that overexpression of bZIP4 significantly promoted lignin deposition and stone cell accumulation in pear callus, transiently transformed pear fruit, and transgenic Arabidopsis plants. Molecular assays showed that bZIP4 directly binds to the promoter of HCT32 and activates its transcription. Consistently, overexpression of HCT32 also resulted in enhanced lignin accumulation and increased stone cell content. Collectively, these findings reveal that the bZIP4-HCT32 regulatory module positively regulates lignification and stone cell formation during pear fruit development. This study provides new insights into the molecular basis of fruit texture formation and identifies promising targets for reducing stone cell content, thereby contributing to the genetic improvement of pear fruit quality and potentially enhancing postharvest performance.
- 19 January 2023
- Published by Wiley in The Plant Journal
- Vol. 113 (3) , 626-642
Multi‐omics analyses reveal stone cell distribution pattern in pear fruit
SUMMARY: Stone cells are the brachysclereid cells in pear (Pyrus) fruit, consisting almost entirely of lignified secondary cell walls. They are distributed mainly near the fruit core and spread radially in the whole fruit. However, the development of stone cells has not been comprehensively characterized, and little is known about the regulation of stone cell formation at the transcriptomic, proteomic, and metabolomic levels. In the present study, we performed phenomic analysis on the stone cells and their associated vascular bundles distributed near the fruit cores. Transcriptomic, proteomic, and metabolomic analyses revealed a significant positive regulation of biological processes which contribute to the lignification and lignin deposition in stone cells near the fruit core, including sucrose metabolism and phenylalanine, tyrosine, tryptophan, and phenylalanine biosynthesis. We found many metabolites generated from the phenylpropanoid pathway contributing to the cell wall formation of stone cells near the fruit core. Furthermore, we identified a key transcription factor, PbbZIP48, which was highly expressed near the fruit core and was shown to regulate lignin biosynthesis in stone cells. In conclusion, the present study provides insight into the mechanism of lignified stone cell formation near the pear fruit core at multiple levels.
- 19 January 2023
- Published by Wiley in The Plant Journal
- Vol. 113 (3) , 626-642
Multi‐omics analyses reveal stone cell distribution pattern in pear fruit
SUMMARY: Stone cells are the brachysclereid cells in pear (Pyrus) fruit, consisting almost entirely of lignified secondary cell walls. They are distributed mainly near the fruit core and spread radially in the whole fruit. However, the development of stone cells has not been comprehensively characterized, and little is known about the regulation of stone cell formation at the transcriptomic, proteomic, and metabolomic levels. In the present study, we performed phenomic analysis on the stone cells and their associated vascular bundles distributed near the fruit cores. Transcriptomic, proteomic, and metabolomic analyses revealed a significant positive regulation of biological processes which contribute to the lignification and lignin deposition in stone cells near the fruit core, including sucrose metabolism and phenylalanine, tyrosine, tryptophan, and phenylalanine biosynthesis. We found many metabolites generated from the phenylpropanoid pathway contributing to the cell wall formation of stone cells near the fruit core. Furthermore, we identified a key transcription factor, PbbZIP48, which was highly expressed near the fruit core and was shown to regulate lignin biosynthesis in stone cells. In conclusion, the present study provides insight into the mechanism of lignified stone cell formation near the pear fruit core at multiple levels.
- 12 June 2020
- Published by Springer Nature in Acta Physiologiae Plantarum
- Vol. 42 (7) , 1-14
Candidate proteins involved in the calyx abscission process of ‘Kuerlexiangli’ (Pyrus sinkiangensis Yu) identified by iTRAQ analysis
- 12 June 2020
- Published by Springer Nature in Acta Physiologiae Plantarum
- Vol. 42 (7) , 1-14
Candidate proteins involved in the calyx abscission process of ‘Kuerlexiangli’ (Pyrus sinkiangensis Yu) identified by iTRAQ analysis
- Open Access
- 15 November 2017
- Published by Canadian Center of Science and Education in Journal of Agricultural Science
- Vol. 9 (12) , p30
Effect of Selected Plant Growth Regulators on Yield and Stem Height of Spring Wheat in Ontario
Lodging is an important limiting factor in wheat because it affects growth, yield and grain quality. Plant growth regulators (PGRs) are often used to restrain elongation of internodes, improve lodging traits, and protect yield potentials. An experiment was set up in the greenhouse at the Ottawa Research and Development Centre (ORDC) to study the effect of the selected PGRs (Manipulator, the active ingredient of which is chlormequat; and Palisade, the active ingredient of which is trinexapac-ethyl) on yield, stem height and morphological traits in six spring wheat cultivars (AC Carberry, AAC Scotia, Hoffman, Fuzion, FL62R1, and AW725). Both PGRs reduced plant height and caused a 6% to 48% reduction in the length of the second basal internode. The mixture of the two PGRs had a synergistic affect and made the stem shorter. The application of PGRs significantly reduced lodging, increased stem diameter, thickness, filling degree, and stem strength, and increased leaf relative chlorophyll content. However, application of PGRs significantly reduced grain yield, and the combination of the two PGRs (Manipulator and Palisade) had a synergistic effect and lowered the yield. In general, the effect of Palisade was more evident than that of Manipulator.
- 15 November 2017
- Published by Canadian Center of Science and Education in Journal of Agricultural Science
- Vol. 9 (12) , p30
Open AccessEffect of Selected Plant Growth Regulators on Yield and Stem Height of Spring Wheat in Ontario
Lodging is an important limiting factor in wheat because it affects growth, yield and grain quality. Plant growth regulators (PGRs) are often used to restrain elongation of internodes, improve lodging traits, and protect yield potentials. An experiment was set up in the greenhouse at the Ottawa Research and Development Centre (ORDC) to study the effect of the selected PGRs (Manipulator, the active ingredient of which is chlormequat; and Palisade, the active ingredient of which is trinexapac-ethyl) on yield, stem height and morphological traits in six spring wheat cultivars (AC Carberry, AAC Scotia, Hoffman, Fuzion, FL62R1, and AW725). Both PGRs reduced plant height and caused a 6% to 48% reduction in the length of the second basal internode. The mixture of the two PGRs had a synergistic affect and made the stem shorter. The application of PGRs significantly reduced lodging, increased stem diameter, thickness, filling degree, and stem strength, and increased leaf relative chlorophyll content. However, application of PGRs significantly reduced grain yield, and the combination of the two PGRs (Manipulator and Palisade) had a synergistic effect and lowered the yield. In general, the effect of Palisade was more evident than that of Manipulator.
- Open Access
- 15 August 2017
- Published by Canadian Center of Science and Education in Journal of Agricultural Science
- Vol. 9 (9) , p1
Low Temperature Storage and in vitro Pollen Germination of Selected Spring Wheat Accessions
The study was conducted to evaluate in vitro pollen germination of 50 spring wheat (Triticum aestivum L.) accessions at three storage temperatures (23 °C, 5 °C, and -20 °C). Germination of the mature pollen was measured right after harvest (0 time), and 24, 48, and 72 h after storage (HAS). Differences in fresh pollen germination between accessions were significant and ranged from 21.15% to 1.09%. Pollen germination was the lowest at 24 h at room temperature. The pollens of 24 wheat accessions (AAC Scotia, AW636, AW725, AW780, AW804, AW822, AW823, Brookfield, BRS Pardela, ECSW05, ECSW38, ECSW48, ECSW49, ECSW69, Hoffman, Kleos, Major, Nass, 12NQW-237, 12NQW-413, 12NQW-414, 12NQW-436, 12NQW-754, and 12BW0374) were viable after 24 h when they were stored at 5 °C. Sub-zero temperature did not prolong pollen viability.
- 15 August 2017
- Published by Canadian Center of Science and Education in Journal of Agricultural Science
- Vol. 9 (9) , p1
Open AccessLow Temperature Storage and in vitro Pollen Germination of Selected Spring Wheat Accessions
The study was conducted to evaluate in vitro pollen germination of 50 spring wheat (Triticum aestivum L.) accessions at three storage temperatures (23 °C, 5 °C, and -20 °C). Germination of the mature pollen was measured right after harvest (0 time), and 24, 48, and 72 h after storage (HAS). Differences in fresh pollen germination between accessions were significant and ranged from 21.15% to 1.09%. Pollen germination was the lowest at 24 h at room temperature. The pollens of 24 wheat accessions (AAC Scotia, AW636, AW725, AW780, AW804, AW822, AW823, Brookfield, BRS Pardela, ECSW05, ECSW38, ECSW48, ECSW49, ECSW69, Hoffman, Kleos, Major, Nass, 12NQW-237, 12NQW-413, 12NQW-414, 12NQW-436, 12NQW-754, and 12BW0374) were viable after 24 h when they were stored at 5 °C. Sub-zero temperature did not prolong pollen viability.
- Open Access
- 15 March 2017
- Published by IntechOpen
The Effect of Production Systems on Strawberry Quality
The Effect of Production Systems on Strawberry Quality | InTechOpen, Published on: 2017-03-15. Authors: Li Fan, Claudine Dubé and Shahrokh Khanizadeh
- 15 March 2017
- Published by IntechOpen
Open AccessThe Effect of Production Systems on Strawberry Quality
The Effect of Production Systems on Strawberry Quality | InTechOpen, Published on: 2017-03-15. Authors: Li Fan, Claudine Dubé and Shahrokh Khanizadeh