Pankaj Dubey
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Pankaj Dubey has a total of 18 co-authors. Here are the top co-authors by number of shared publications:
- Krishanu Ray
Tata Institute of Fundamental Research 1 Department of Biological Sciences Mumbai 400005
6 shared publications - Tushna Kapoor
Department of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra 400005, India
3 shared publications Seema Shirolikar
Department of Biological Sciences, Tata Institute of Fundamental Research, Mumbai 400005, India
2 shared publications- Seema Shirolikar
Tata Institute of Fundamental Research, Mumbai, India
2 shared publications - Subhojit Roy
University of California, San Diego
2 shared publications Archan Ganguly
Department of Neurosciences, University of California, San Diego, La Jolla, CA 4
1 shared publication
Latest Publications
- Open Access
- 15 December 2021
- Published by Elsevier in STAR Protocols
- Vol. 3 (1) , 101020
Time-lapse imaging of Drosophila testis for monitoring actin dynamics and sperm release
- 15 December 2021
- Published by Elsevier in STAR Protocols
- Vol. 3 (1) , 101020
Open AccessTime-lapse imaging of Drosophila testis for monitoring actin dynamics and sperm release
- Open Access
Nanoscale indentation of plasma membrane establishes a contractile actomyosin scaffold through selective activation of the Amphiphysin-Rho1-Dia/DAAM and Rok pathway
Nanoscale bending of plasma membrane increases cell adhesion, induces cell-signalling, triggers F-actin assembly and endocytosis in tissue-cultured cells. The underlying mechanisms are not very well understood. Here, we show that stretching the plasma membrane of somatic cyst cell around rigid spermatid heads generates a stable, tubular endomembrane scaffold supported by contractile actomyosin. The structure resembles an actin-basket covering the bundle of spermatid heads. Genetic analysis suggests that the actomyosin organisation is nucleated exclusively by the Formins, Diaphanous and DAAM, downstream of Rho1, recruited by the Bin-Amphiphysin-Rvs (BAR)-domain protein, Amphiphysin, around the spermatid heads. Actomyosin activity at the actin-basket gathers the spermatid heads into a compact bundle and resists the invasion of the somatic cell by the intruding spermatids. These observations revealed a new response mechanism of nanoscale bending of the plasma membrane, which generates a novel cell adhesion strategy through active clamping. Highlights: Stretching the plasma membrane around a spermatid head recruits Amphiphysin and Rho1. Rho1 activation triggers F-actin assembly in situ through Diaphanous and DAAM. Rho1-Rok activation assembles actomyosin scaffold around the folded plasma membrane. Contractile actomyosin enables plasma membrane to clamp onto the spermatid head. Author summary: Sperm released from the somatic enclosure is essential for male fertility. During differentiation, the somatic cell membrane, associated with dense F-actin scaffold, tightly hold each spermatid head before release. Kapoor et al., showed that the bending and stretching of the plasma membrane trigger the assembly of an actomyosin scaffold around the bent membrane, which clamps the spermatids together preventing the premature release and somatic cell penetration. This finding provides new insight into the molecular networks activated by mechanical bending of the plasma membrane.
Open AccessNanoscale indentation of plasma membrane establishes a contractile actomyosin scaffold through selective activation of the Amphiphysin-Rho1-Dia/DAAM and Rok pathway
Nanoscale bending of plasma membrane increases cell adhesion, induces cell-signalling, triggers F-actin assembly and endocytosis in tissue-cultured cells. The underlying mechanisms are not very well understood. Here, we show that stretching the plasma membrane of somatic cyst cell around rigid spermatid heads generates a stable, tubular endomembrane scaffold supported by contractile actomyosin. The structure resembles an actin-basket covering the bundle of spermatid heads. Genetic analysis suggests that the actomyosin organisation is nucleated exclusively by the Formins, Diaphanous and DAAM, downstream of Rho1, recruited by the Bin-Amphiphysin-Rvs (BAR)-domain protein, Amphiphysin, around the spermatid heads. Actomyosin activity at the actin-basket gathers the spermatid heads into a compact bundle and resists the invasion of the somatic cell by the intruding spermatids. These observations revealed a new response mechanism of nanoscale bending of the plasma membrane, which generates a novel cell adhesion strategy through active clamping. Highlights: Stretching the plasma membrane around a spermatid head recruits Amphiphysin and Rho1. Rho1 activation triggers F-actin assembly in situ through Diaphanous and DAAM. Rho1-Rok activation assembles actomyosin scaffold around the folded plasma membrane. Contractile actomyosin enables plasma membrane to clamp onto the spermatid head. Author summary: Sperm released from the somatic enclosure is essential for male fertility. During differentiation, the somatic cell membrane, associated with dense F-actin scaffold, tightly hold each spermatid head before release. Kapoor et al., showed that the bending and stretching of the plasma membrane trigger the assembly of an actomyosin scaffold around the bent membrane, which clamps the spermatids together preventing the premature release and somatic cell penetration. This finding provides new insight into the molecular networks activated by mechanical bending of the plasma membrane.
- Open Access
- 1 January 2019
- Published by The Company of Biologists in Biology Open
- Vol. 8 (2) , bio036939
Atypical septate junctions maintain the somatic enclosure around maturing spermatids and prevent premature sperm release inDrosophilatestis
Tight junctions prevent paracellular flow and maintain cell polarity in an epithelium. These junctions are also required for maintaining the blood-testis barrier, which is essential for sperm differentiation. Septate junctions in insects are orthologous to the tight junctions. In Drosophila testis, major septate junction components co-localize at the interface of germline and somatic cells initially, and then condense between the two somatic cells in a cyst after germline meiosis. Their localization is extensively remodeled in subsequent stages. We find that characteristic septate junctions are formed between the somatic cyst cells at the elongated spermatid stage. Consistent with previous reports, knockdown of essential junctional components – Discs-large-1 and Neurexin-IV – during the early stages disrupted sperm differentiation beyond the spermatocyte stage. Knockdown of these proteins during the final stages of spermatid maturation caused premature release of spermatids inside the testes, resulting in partial loss of male fertility. These results indicate the importance of maintaining the integrity of the somatic enclosure during spermatid coiling and release in Drosophila testis. It also highlights the functional similarity with the tight junction proteins during mammalian spermatogenesis. This article has an associated First Person interview with the first author of the paper.
- 1 January 2019
- Published by The Company of Biologists in Biology Open
- Vol. 8 (2) , bio036939
Open AccessAtypical septate junctions maintain the somatic enclosure around maturing spermatids and prevent premature sperm release inDrosophilatestis
Tight junctions prevent paracellular flow and maintain cell polarity in an epithelium. These junctions are also required for maintaining the blood-testis barrier, which is essential for sperm differentiation. Septate junctions in insects are orthologous to the tight junctions. In Drosophila testis, major septate junction components co-localize at the interface of germline and somatic cells initially, and then condense between the two somatic cells in a cyst after germline meiosis. Their localization is extensively remodeled in subsequent stages. We find that characteristic septate junctions are formed between the somatic cyst cells at the elongated spermatid stage. Consistent with previous reports, knockdown of essential junctional components – Discs-large-1 and Neurexin-IV – during the early stages disrupted sperm differentiation beyond the spermatocyte stage. Knockdown of these proteins during the final stages of spermatid maturation caused premature release of spermatids inside the testes, resulting in partial loss of male fertility. These results indicate the importance of maintaining the integrity of the somatic enclosure during spermatid coiling and release in Drosophila testis. It also highlights the functional similarity with the tight junction proteins during mammalian spermatogenesis. This article has an associated First Person interview with the first author of the paper.
- Open Access
- 6 November 2018
- Published by Rockefeller University Press in Journal of Cell Biology
- Vol. 218 (1) , 112-124
Processive flow by biased polymerization mediates the slow axonal transport of actin
Classic pulse-chase studies have shown that actin is conveyed in slow axonal transport, but the mechanistic basis for this movement is unknown. Recently, we reported that axonal actin was surprisingly dynamic, with focal assembly/disassembly events (“actin hotspots”) and elongating polymers along the axon shaft (“actin trails”). Using a combination of live imaging, superresolution microscopy, and modeling, in this study, we explore how these dynamic structures can lead to processive transport of actin. We found relatively more actin trails elongated anterogradely as well as an overall slow, anterogradely biased flow of actin in axon shafts. Starting with first principles of monomer/filament assembly and incorporating imaging data, we generated a quantitative model simulating axonal hotspots and trails. Our simulations predict that the axonal actin dynamics indeed lead to a slow anterogradely biased flow of the population. Collectively, the data point to a surprising scenario where local assembly and biased polymerization generate the slow axonal transport of actin without involvement of microtubules (MTs) or MT-based motors. Mechanistically distinct from polymer sliding, this might be a general strategy to convey highly dynamic cytoskeletal cargoes.
- 6 November 2018
- Published by Rockefeller University Press in Journal of Cell Biology
- Vol. 218 (1) , 112-124
Open AccessProcessive flow by biased polymerization mediates the slow axonal transport of actin
Classic pulse-chase studies have shown that actin is conveyed in slow axonal transport, but the mechanistic basis for this movement is unknown. Recently, we reported that axonal actin was surprisingly dynamic, with focal assembly/disassembly events (“actin hotspots”) and elongating polymers along the axon shaft (“actin trails”). Using a combination of live imaging, superresolution microscopy, and modeling, in this study, we explore how these dynamic structures can lead to processive transport of actin. We found relatively more actin trails elongated anterogradely as well as an overall slow, anterogradely biased flow of actin in axon shafts. Starting with first principles of monomer/filament assembly and incorporating imaging data, we generated a quantitative model simulating axonal hotspots and trails. Our simulations predict that the axonal actin dynamics indeed lead to a slow anterogradely biased flow of the population. Collectively, the data point to a surprising scenario where local assembly and biased polymerization generate the slow axonal transport of actin without involvement of microtubules (MTs) or MT-based motors. Mechanistically distinct from polymer sliding, this might be a general strategy to convey highly dynamic cytoskeletal cargoes.
- 1 August 2018
- Published by Elsevier in Current Opinion in Neurobiology
- Vol. 51, 163-167
Actin Assemblies in the Axon Shaft – some Open Questions
- 1 August 2018
- Published by Elsevier in Current Opinion in Neurobiology
- Vol. 51, 163-167
Actin Assemblies in the Axon Shaft – some Open Questions
- Open Access
Atypical septate junctions maintain the somatic enclosure around maturing spermatids and prevent premature sperm release in Drosophila testis
Tight junctions prevent the paracellular flow and maintain cell polarity in an epithelium. These are also essential for maintaining the blood-testis-barrier involved in regulating sperm differentiation. Septate junctions are orthologous to the tight junctions in insects. In Drosophila testis, major septate junction components co-localize at the interface of germline and somatic cells initially and then condense between the two somatic cells in a cyst after germline meiosis. Their localization is extensively remodeled in subsequent stages. We find that characteristic septate junctions are formed between the somatic cyst cells at the elongated spermatid stage. Consistent with the previous reports, knockdown of essential junctional components, Discs-large-1 and Neurexin-IV, in the somatic cyst cells, during the early stages, disrupted sperm differentiation beyond the spermatocyte stage. Somatic knockdown of these proteins during the final stages of spermatid maturation caused premature release of spermatids inside the testes, resulting in partial loss of male fertility. These results indicate the importance of maintaining mechanical integrity of the somatic enclosure during spermatid coiling and release in Drosophila testis. It also highlights the functional similarity with the tight junction proteins during spermatogenesis in mammalian testes. Summary statement: Dubey et al., showed that septate junctions stitch the somatic enclosure around maturing spermatids in Drosophila testis. Maintaining the integrity of this junction is essential for proper release of spermatids.
Open AccessAtypical septate junctions maintain the somatic enclosure around maturing spermatids and prevent premature sperm release in Drosophila testis
Tight junctions prevent the paracellular flow and maintain cell polarity in an epithelium. These are also essential for maintaining the blood-testis-barrier involved in regulating sperm differentiation. Septate junctions are orthologous to the tight junctions in insects. In Drosophila testis, major septate junction components co-localize at the interface of germline and somatic cells initially and then condense between the two somatic cells in a cyst after germline meiosis. Their localization is extensively remodeled in subsequent stages. We find that characteristic septate junctions are formed between the somatic cyst cells at the elongated spermatid stage. Consistent with the previous reports, knockdown of essential junctional components, Discs-large-1 and Neurexin-IV, in the somatic cyst cells, during the early stages, disrupted sperm differentiation beyond the spermatocyte stage. Somatic knockdown of these proteins during the final stages of spermatid maturation caused premature release of spermatids inside the testes, resulting in partial loss of male fertility. These results indicate the importance of maintaining mechanical integrity of the somatic enclosure during spermatid coiling and release in Drosophila testis. It also highlights the functional similarity with the tight junction proteins during spermatogenesis in mammalian testes. Summary statement: Dubey et al., showed that septate junctions stitch the somatic enclosure around maturing spermatids in Drosophila testis. Maintaining the integrity of this junction is essential for proper release of spermatids.
- 3 November 2017
- Published by Springer Nature in Nature Reviews Neuroscience
- Vol. 18 (12) , 713-726
The nano-architecture of the axonal cytoskeleton
The corporeal beauty of the neuronal cytoskeleton has captured the imagination of generations of scientists. One of the easiest cellular structures to visualize by light microscopy, its existence has been known for well over 100 years, yet we have only recently begun to fully appreciate its intricacy and diversity. Recent studies combining new probes with super-resolution microscopy and live imaging have revealed surprising details about the axonal cytoskeleton and, in particular, have discovered previously unknown actin-based structures. Along with traditional electron microscopy, these newer techniques offer a nanoscale view of the axonal cytoskeleton, which is important for our understanding of neuronal form and function, and lay the foundation for future studies. In this Review, we summarize existing concepts in the field and highlight contemporary discoveries that have fundamentally altered our perception of the axonal cytoskeleton.
- 3 November 2017
- Published by Springer Nature in Nature Reviews Neuroscience
- Vol. 18 (12) , 713-726
The nano-architecture of the axonal cytoskeleton
The corporeal beauty of the neuronal cytoskeleton has captured the imagination of generations of scientists. One of the easiest cellular structures to visualize by light microscopy, its existence has been known for well over 100 years, yet we have only recently begun to fully appreciate its intricacy and diversity. Recent studies combining new probes with super-resolution microscopy and live imaging have revealed surprising details about the axonal cytoskeleton and, in particular, have discovered previously unknown actin-based structures. Along with traditional electron microscopy, these newer techniques offer a nanoscale view of the axonal cytoskeleton, which is important for our understanding of neuronal form and function, and lay the foundation for future studies. In this Review, we summarize existing concepts in the field and highlight contemporary discoveries that have fundamentally altered our perception of the axonal cytoskeleton.
- 1 September 2016
- Published by Elsevier in Developmental Cell
- Vol. 38 (5) , 507-521
Localized, Reactive F-Actin Dynamics Prevents Abnormal Somatic Cell Penetration by Mature Spermatids
- 1 September 2016
- Published by Elsevier in Developmental Cell
- Vol. 38 (5) , 507-521
Localized, Reactive F-Actin Dynamics Prevents Abnormal Somatic Cell Penetration by Mature Spermatids
- 10 May 2016
- Published by Springer Nature in Journal of Biosciences
- Vol. 41 (2) , 219-227
A conditional Orco requirement in the somatic cyst cells for maintaining spermatids in a tight bundle in Drosophila testis
Odorant receptors (OR) heterodimerizes with the OR co-receptor (Orco), forming specific odorant-gated cation channels, which are key to odor reception at the olfactory sensory neurons (OSN). Mammalian ORs are expressed in many other tissues, including testis. However, their biological implications are yet to be fully ascertained. In the mosquito, Orco is localized along the sperm tail and is indicated to maintain fidelity. Here, we show that orco expresses in Drosophila testis. The levels are higher in the somatic cyst cells. The orco-null mutants are perfectly fertile at 25°C. At 28°C, the coiled spermatid bundles are severely disrupted. The loss of Orco also disrupts the actin cap, which forms inside the head cyst cell at the rostral ends of the spermatid nuclei after coiling, and plays a key role in preventing the abnormal release of spermatids from the cyst enclosure. Both the defects are rescued by the somatic cyst cell-specific expression of the UAS-orco transgene. These results highlight a novel role of Orco in the somatic tissue during sperm release.
- 10 May 2016
- Published by Springer Nature in Journal of Biosciences
- Vol. 41 (2) , 219-227
A conditional Orco requirement in the somatic cyst cells for maintaining spermatids in a tight bundle in Drosophila testis
Odorant receptors (OR) heterodimerizes with the OR co-receptor (Orco), forming specific odorant-gated cation channels, which are key to odor reception at the olfactory sensory neurons (OSN). Mammalian ORs are expressed in many other tissues, including testis. However, their biological implications are yet to be fully ascertained. In the mosquito, Orco is localized along the sperm tail and is indicated to maintain fidelity. Here, we show that orco expresses in Drosophila testis. The levels are higher in the somatic cyst cells. The orco-null mutants are perfectly fertile at 25°C. At 28°C, the coiled spermatid bundles are severely disrupted. The loss of Orco also disrupts the actin cap, which forms inside the head cyst cell at the rostral ends of the spermatid nuclei after coiling, and plays a key role in preventing the abnormal release of spermatids from the cyst enclosure. Both the defects are rescued by the somatic cyst cell-specific expression of the UAS-orco transgene. These results highlight a novel role of Orco in the somatic tissue during sperm release.