Naoya Kumagai
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Naoya Kumagai has a total of 110 co-authors. Here are the top co-authors by number of shared publications:
- Masakatsu Shibasaki
Institute of Microbial Chemistry (BIKAKEN), 3-14-23 Kamiosaki, Shinagawa-ku, Tokyo 141-0021, Japan
114 shared publications - Hidetoshi Noda
Institute of Microbial Chemistry (BIKAKEN), Tokyo 3-14-23 Kamiosaki Shinagawa-ku Tokyo 141-0021 Japan
17 shared publications - Wei Xu
School of Pharmacy, Nantong University, 9 Seyuan Road, Nantong, Jiangsu Province, 226001, China
8 shared publications Lennart Brewitz
Institute of Microbial Chemistry (BIKAKEN) Tokyo Kamiosaki 3‐14‐23, Shinagawa‐ku 141‐0021 Tokyo Japan
7 shared publications- Ryosuke Tsutsumi
Graduate School of Pharmaceutical Sciences, Keio University, 1-5-30 Shibakoen, Minato-ku, Tokyo 105-8512, Japan
7 shared publications Shaoquan Lin
Institute of Microbial Chemistry (BIKAKEN), Tokyo, 3-14-23 Kamiosaki, Shinagawa-ku, Tokyo 141-0021, Japan.
7 shared publications
Latest Publications
- Open Access
- 7 October 2026
- Published by Royal Society of Chemistry (RSC) in Organic & Biomolecular Chemistry
- Vol. 24 (38) , 7886-7891
Intramolecular hydrogen bonding topology modulates fluorescence in C4N4 fluorophores
Substituent-dependent intramolecular hydrogen-bonding topology modulates fluorescence in compact C4N4 fluorophores and enables an acetylation-responsive turn-on probe.
- 7 October 2026
- Published by Royal Society of Chemistry (RSC) in Organic & Biomolecular Chemistry
- Vol. 24 (38) , 7886-7891
Open AccessIntramolecular hydrogen bonding topology modulates fluorescence in C4N4 fluorophores
Substituent-dependent intramolecular hydrogen-bonding topology modulates fluorescence in compact C4N4 fluorophores and enables an acetylation-responsive turn-on probe.
- 21 July 2026
- Published by Georg Thieme Verlag KG in Synlett
Catalyst-Controlled Chemoselective Transformation of Cyanopyridines over Cyanoarenes Enabled by a DATB–Phenothiazine Hybrid Photocatalyst
A catalyst-dependent chemoselective photoredox reaction of cyanopyridines and cyanoarenes with N-aryl tertiary amines is described. In competitive reactions under visible-light irradiation, a conventional iridium photocatalyst preferentially promoted coupling of the cyanoarene component, whereas phenothiazine-based catalyst systems, including a DATB–phenothiazine hybrid, favored formation of cyanopyridine-derived products. The cyanopyridine-selective product distribution was observed across several combinations of amines, cyanopyridines, and competing cyanoarenes. These results show that the identity of the photocatalyst can govern the relative substrate preference of closely related cyano(hetero)arene acceptors in photoredox catalysis.
- 21 July 2026
- Published by Georg Thieme Verlag KG in Synlett
Catalyst-Controlled Chemoselective Transformation of Cyanopyridines over Cyanoarenes Enabled by a DATB–Phenothiazine Hybrid Photocatalyst
A catalyst-dependent chemoselective photoredox reaction of cyanopyridines and cyanoarenes with N-aryl tertiary amines is described. In competitive reactions under visible-light irradiation, a conventional iridium photocatalyst preferentially promoted coupling of the cyanoarene component, whereas phenothiazine-based catalyst systems, including a DATB–phenothiazine hybrid, favored formation of cyanopyridine-derived products. The cyanopyridine-selective product distribution was observed across several combinations of amines, cyanopyridines, and competing cyanoarenes. These results show that the identity of the photocatalyst can govern the relative substrate preference of closely related cyano(hetero)arene acceptors in photoredox catalysis.
- Open Access
- 29 May 2026
- Published by American Chemical Society (ACS) in JACS Au
- Vol. 6 (6) , 3527-3535
Quinoline-Directed Folding in Anilide–Quinoline Hybrids: Length-Controlled Three-Dimensional Conformational Diversity
Quinoline-based aromatic oligoamide foldamers composed of anilide (A) and quinoline (Q) units, in which amide-bond formation at the quinoline 8-position provides access to cyclic and acyclic architectures, exhibit distinct folding behaviors. The cyclic series A(n)Q(n) (n = 2–6) was obtained by one-pot cyclooligomerization or by stepwise assembly followed by intramolecular amidation. Structural analyses revealed a pronounced ring-size dependence of conformation and symmetry, ranging from symmetric macrocycles to unsymmetric, partially helical folds. In particular, the hexamer A6Q6 exhibits an unusual two-state conformational equilibrium in solution and was isolated in the solid state as both a partially helical unsymmetric conformer and a highly symmetric S 6 cubic conformer featuring a hydrophobic internal cavity. In parallel, the corresponding acyclic oligomers NH 2 -A(n)Q(n)-CO 2 H (n = 3–6) adopt well-defined helical structures in the solid state and retain compact folded conformations in solution, as supported by NMR, H/D-exchange, and NOE analyses. The helical fold generates a confined cavity comparable in size to that of a 12-membered ring. These findings establish anilide–quinoline hybrids as a versatile platform for size-programmed macrocycles, stable aromatic helices, and functional foldamer architectures.
- 29 May 2026
- Published by American Chemical Society (ACS) in JACS Au
- Vol. 6 (6) , 3527-3535
Open AccessQuinoline-Directed Folding in Anilide–Quinoline Hybrids: Length-Controlled Three-Dimensional Conformational Diversity
Quinoline-based aromatic oligoamide foldamers composed of anilide (A) and quinoline (Q) units, in which amide-bond formation at the quinoline 8-position provides access to cyclic and acyclic architectures, exhibit distinct folding behaviors. The cyclic series A(n)Q(n) (n = 2–6) was obtained by one-pot cyclooligomerization or by stepwise assembly followed by intramolecular amidation. Structural analyses revealed a pronounced ring-size dependence of conformation and symmetry, ranging from symmetric macrocycles to unsymmetric, partially helical folds. In particular, the hexamer A6Q6 exhibits an unusual two-state conformational equilibrium in solution and was isolated in the solid state as both a partially helical unsymmetric conformer and a highly symmetric S 6 cubic conformer featuring a hydrophobic internal cavity. In parallel, the corresponding acyclic oligomers NH 2 -A(n)Q(n)-CO 2 H (n = 3–6) adopt well-defined helical structures in the solid state and retain compact folded conformations in solution, as supported by NMR, H/D-exchange, and NOE analyses. The helical fold generates a confined cavity comparable in size to that of a 12-membered ring. These findings establish anilide–quinoline hybrids as a versatile platform for size-programmed macrocycles, stable aromatic helices, and functional foldamer architectures.
- Open Access
- 21 February 2026
- Published by Wiley in Chemistry – A European Journal
- Vol. 32 (18) , e03491
Revisiting C4N4 Fluorophore: Theoretical Elucidation of the Origin of Fluorescent Properties of 2,5‐Diaminopyrimidines and Strategic Applications to Pd Detection
Compact organic fluorophores are attractive scaffolds for probe design, yet their emission is often compromised by efficient nonradiative decay. Here, we introduce 2,5‐diaminopyrimidine‐based C4N4 as an intrinsically emissive, exceptionally small platform, which remains bright without extended π‐conjugation. Systematic substitution at 4,6‐positions with alkyl, alkenyl, and alkynyl groups reveals robust emission for alkyl and alkynyl derivatives, and a striking bimodality for alkenyls. TDDFT combined with ES/SC‐AFIR mapped the S 1 → S 0 internal‐conversion landscape, providing a rationale for substituent‐dependent relaxation behavior. Manipulation at the 5‐position allowed for independent trigger‐responsive emission behavior. This orthogonal design, where the 4,6‐substituted C4N4 core serves as the fluorophore and the 5‐position operates as ON/OFF gate, enabled the development of turn‐on probes for Pd 2+ .
- 21 February 2026
- Published by Wiley in Chemistry – A European Journal
- Vol. 32 (18) , e03491
Open AccessRevisiting C4N4 Fluorophore: Theoretical Elucidation of the Origin of Fluorescent Properties of 2,5‐Diaminopyrimidines and Strategic Applications to Pd Detection
Compact organic fluorophores are attractive scaffolds for probe design, yet their emission is often compromised by efficient nonradiative decay. Here, we introduce 2,5‐diaminopyrimidine‐based C4N4 as an intrinsically emissive, exceptionally small platform, which remains bright without extended π‐conjugation. Systematic substitution at 4,6‐positions with alkyl, alkenyl, and alkynyl groups reveals robust emission for alkyl and alkynyl derivatives, and a striking bimodality for alkenyls. TDDFT combined with ES/SC‐AFIR mapped the S 1 → S 0 internal‐conversion landscape, providing a rationale for substituent‐dependent relaxation behavior. Manipulation at the 5‐position allowed for independent trigger‐responsive emission behavior. This orthogonal design, where the 4,6‐substituted C4N4 core serves as the fluorophore and the 5‐position operates as ON/OFF gate, enabled the development of turn‐on probes for Pd 2+ .
- 16 February 2026
- Published by American Chemical Society (ACS) in Chemistry of Materials
- Vol. 38 (5) , 2453-2463
TriQuinazoline and Related Quinoline/Quinazoline Cyclic Trimers: Unified Synthesis, Planar Discotic Architecture, and Proton Dynamics in an Atomic-Scale Cavity
- 16 February 2026
- Published by American Chemical Society (ACS) in Chemistry of Materials
- Vol. 38 (5) , 2453-2463
TriQuinazoline and Related Quinoline/Quinazoline Cyclic Trimers: Unified Synthesis, Planar Discotic Architecture, and Proton Dynamics in an Atomic-Scale Cavity
- Open Access
- 30 January 2026
- Published by Oxford University Press (OUP) in Chemistry Letters
- Vol. 55 (2)
Insights into coordination and (semi-)rigidity in the molecular design of bicyclic heterocycle frameworks
Macrocyclic compounds, exhibiting unique properties arising from their large-ring frameworks, have captivated the attention of organic chemists over the last few decades. These molecules serve specific functions across disciplines, including synthetic chemistry, materials science, and biology. Representative molecules in this category, including crown ethers, calix[n]arenes, and porphyrinoids composed of ether/phenol/pyrrole subunits, exhibit unparalleled structural and functional diversity. In contrast, macrocycles exploiting quinoline/quinazoline as key building blocks to construct specific macrocyclic architectures have received limited attention and are much less explored. In this Highlight Review, we summarize our recent advances in oligo-quinoline/quinazoline macrocycles. Emphasis is focused on synthetic strategies, structural features, and emerging applications in organometallic, supramolecular, and photophysical chemistry. We anticipate that these collective results will guide new molecular designs within the broader family of heterocycle-based macrocycles.
- 30 January 2026
- Published by Oxford University Press (OUP) in Chemistry Letters
- Vol. 55 (2)
Open AccessInsights into coordination and (semi-)rigidity in the molecular design of bicyclic heterocycle frameworks
Macrocyclic compounds, exhibiting unique properties arising from their large-ring frameworks, have captivated the attention of organic chemists over the last few decades. These molecules serve specific functions across disciplines, including synthetic chemistry, materials science, and biology. Representative molecules in this category, including crown ethers, calix[n]arenes, and porphyrinoids composed of ether/phenol/pyrrole subunits, exhibit unparalleled structural and functional diversity. In contrast, macrocycles exploiting quinoline/quinazoline as key building blocks to construct specific macrocyclic architectures have received limited attention and are much less explored. In this Highlight Review, we summarize our recent advances in oligo-quinoline/quinazoline macrocycles. Emphasis is focused on synthetic strategies, structural features, and emerging applications in organometallic, supramolecular, and photophysical chemistry. We anticipate that these collective results will guide new molecular designs within the broader family of heterocycle-based macrocycles.
- 22 September 2025
- Published by American Chemical Society (ACS) in Organic Letters
- Vol. 27 (39) , 10937-10942
DiazaChrysenes (DC): Nitrogen-Containing π-Extended Molecules for Photocatalytic C–H Amination
We report a new class of nitrogen-containing π-extended heterocycles, DiazaChrysenes (DCs), and their dimeric analogues (dDCs) as metal-free photocatalysts for C-H amination. DCs featuring a quinolino[1,2-c]quinazolin-5-ium core were synthesized via electrophilic amide activation and arylation. The resulting compounds displayed tunable photophysical and redox properties, with CF3-substituted DCs enabling the C-H amination of arenes with azoles under visible light and aerobic conditions, achieving yields up to 85%. The reaction tolerated a range of arene and azole substrates without requiring metal salts or additives. In contrast, dDCs exhibited diminished activity, likely due to their extended π-curvature. Computational studies, including NCI, ACID, and NICS analyses, revealed locally aromatic but electronically isolated π-systems and deshielded central 8-membered cores. This work highlights the utility of DC scaffolds as synthetically accessible and redox-tunable organic photocatalysts.
- 22 September 2025
- Published by American Chemical Society (ACS) in Organic Letters
- Vol. 27 (39) , 10937-10942
DiazaChrysenes (DC): Nitrogen-Containing π-Extended Molecules for Photocatalytic C–H Amination
We report a new class of nitrogen-containing π-extended heterocycles, DiazaChrysenes (DCs), and their dimeric analogues (dDCs) as metal-free photocatalysts for C-H amination. DCs featuring a quinolino[1,2-c]quinazolin-5-ium core were synthesized via electrophilic amide activation and arylation. The resulting compounds displayed tunable photophysical and redox properties, with CF3-substituted DCs enabling the C-H amination of arenes with azoles under visible light and aerobic conditions, achieving yields up to 85%. The reaction tolerated a range of arene and azole substrates without requiring metal salts or additives. In contrast, dDCs exhibited diminished activity, likely due to their extended π-curvature. Computational studies, including NCI, ACID, and NICS analyses, revealed locally aromatic but electronically isolated π-systems and deshielded central 8-membered cores. This work highlights the utility of DC scaffolds as synthetically accessible and redox-tunable organic photocatalysts.
- Open Access
- 21 July 2025
- Published by Wiley in Chemistry – An Asian Journal
- Vol. 20 (17) , e00429
Enlarged‐TriQuinoline (Enl‐TQ): Disparity in Chemical Behaviors by Geometric Scaling of the Trimeric Quinoline Ring System
TriQuinoline (TQ), a quasi‐planar cyclic quinoline trimer concatenated at the 2,8‐positions in a head‐to‐tail arrangement, strongly captures a proton at the 12‐membered inner cycle and exhibits unusual physicochemical properties, including unexpected water solubility and the ability to engage in complexation with other π‐conjugated molecules. In this study, we designed and synthesized its expanded analog, coined Enlarged‐TriQuinoline (Enl‐TQ), in which three alkyne units are embedded between three quinoline units to acquire an expanded planar 18‐membered ring system. DFT calculations and X‐ray crystallographic analysis revealed its planar architecture with three inwardly facing pyridinic nitrogen atoms. Despite its structural similarity to TQ, Enl‐TQ displayed distinct host capability and photophysical characteristics.
- 21 July 2025
- Published by Wiley in Chemistry – An Asian Journal
- Vol. 20 (17) , e00429
Open AccessEnlarged‐TriQuinoline (Enl‐TQ): Disparity in Chemical Behaviors by Geometric Scaling of the Trimeric Quinoline Ring System
TriQuinoline (TQ), a quasi‐planar cyclic quinoline trimer concatenated at the 2,8‐positions in a head‐to‐tail arrangement, strongly captures a proton at the 12‐membered inner cycle and exhibits unusual physicochemical properties, including unexpected water solubility and the ability to engage in complexation with other π‐conjugated molecules. In this study, we designed and synthesized its expanded analog, coined Enlarged‐TriQuinoline (Enl‐TQ), in which three alkyne units are embedded between three quinoline units to acquire an expanded planar 18‐membered ring system. DFT calculations and X‐ray crystallographic analysis revealed its planar architecture with three inwardly facing pyridinic nitrogen atoms. Despite its structural similarity to TQ, Enl‐TQ displayed distinct host capability and photophysical characteristics.
- Open Access
- 20 May 2025
- Published by Royal Society of Chemistry (RSC) in Chemical Science
- Vol. 16 (24) , 10714-10721
iso-TEtraQuinoline (i-TEQ): an inherently chiral N4 macrocyclic quinoline tetramer
TEtraQuinoline (TEQ) exhibits head-to-tail connectivity of four quinoline units, affording an achiral S4 symmetric architecture. We re-designed and synthesized iso-TEtraQuinoline (i-TEQ), an inherently chiral D2-symmetric head-to-head tetramer.
- 20 May 2025
- Published by Royal Society of Chemistry (RSC) in Chemical Science
- Vol. 16 (24) , 10714-10721
Open Accessiso-TEtraQuinoline (i-TEQ): an inherently chiral N4 macrocyclic quinoline tetramer
TEtraQuinoline (TEQ) exhibits head-to-tail connectivity of four quinoline units, affording an achiral S4 symmetric architecture. We re-designed and synthesized iso-TEtraQuinoline (i-TEQ), an inherently chiral D2-symmetric head-to-head tetramer.