Prajakta Dandekar
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Prajakta Dandekar has a total of 258 co-authors. Here are the top co-authors by number of shared publications:
- Ratnesh Jain
Department of Biological Sciences and Biotechnology, Institute of Chemical Technology, Mumbai, India
91 shared publications Ratnesh Jain
27 shared publicationsSathish Dyawanapelly
9 shared publicationsPadma V. Devarajan
Insitute of Chemical Technology, Deemed University, Elite Status and Centre of Excellence, Government of Maharashtra
8 shared publicationsAditya Narvekar
Department of Pharmaceutical Sciences and Technology, Institute of Chemical Technology, Mumbai, 400019, India
7 shared publicationsDeepa Chaturvedi
Department of Biological Sciences and Biotechnology, Institute of Chemical Technology, Mumbai, India
7 shared publications
Latest Publications
- 16 October 2026
- Published by Springer Nature in Bioprocess and Biosystems Engineering
- p. 1-13
Integrated dual carbon source and TCA intermediate supplementation in fed-batch fermentation of CHO cells for reduced lactate and ammonia accumulation and improved IgG1 monoclonal antibody titre
Chinese hamster ovary (CHO) cells are the workhorse of biopharmaceutical manufacturing, yet lactate and ammonia accumulation remain persistent bottlenecks that compromise cell viability, productivity, and product quality. To address this, we present an integrated feeding strategy systematically combining Ala-Gln, TCA intermediates, and glucose-galactose dual carbon feed evaluated head-to-head across four defined fed-batch conditions for CHO cultures producing an IgG1 monoclonal antibody (mAb). Conventional L-glutamine was replaced with L-alanyl-glutamine (Ala-Gln) to curb spontaneous ammonia release, while a customized “efficient feed mix” enriched with 2× TCA cycle intermediates and branched-chain amino acids combined with a glucose-galactose co-feed (2 mM glucose + 30 mM galactose) was introduced upon glucose depletion. Four fed-batch conditions were evaluated: a glutamine control (FB-01), Ala-Gln alone (FB-02), Ala-Gln with TCA intermediates (FB-03), and the complete integrated strategy (FB-04). FB-04 delivered an > 83% reduction in peak lactate (4.0 mM) and 80% reduction in ammonia (< 2.0 mM), sustained cell viability above 85% through day 11, and achieved a 93% higher mAb titre (1.72 g/L) with peak Viable count density (VCD) of 39 × 10⁶ cells/mL. Glycosylation profiles (19.0% galactosylation) remained aligned with innovator benchmarks. This study presents the first direct head-to-head benchmarking of Ala-Gln substitution, TCA intermediate supplementation, and galactose co-feeding in a single CHO fed-batch platform, demonstrating their combined metabolic and glycosylation benefits against a glutamine control.
- 16 October 2026
- Published by Springer Nature in Bioprocess and Biosystems Engineering
- p. 1-13
Integrated dual carbon source and TCA intermediate supplementation in fed-batch fermentation of CHO cells for reduced lactate and ammonia accumulation and improved IgG1 monoclonal antibody titre
Chinese hamster ovary (CHO) cells are the workhorse of biopharmaceutical manufacturing, yet lactate and ammonia accumulation remain persistent bottlenecks that compromise cell viability, productivity, and product quality. To address this, we present an integrated feeding strategy systematically combining Ala-Gln, TCA intermediates, and glucose-galactose dual carbon feed evaluated head-to-head across four defined fed-batch conditions for CHO cultures producing an IgG1 monoclonal antibody (mAb). Conventional L-glutamine was replaced with L-alanyl-glutamine (Ala-Gln) to curb spontaneous ammonia release, while a customized “efficient feed mix” enriched with 2× TCA cycle intermediates and branched-chain amino acids combined with a glucose-galactose co-feed (2 mM glucose + 30 mM galactose) was introduced upon glucose depletion. Four fed-batch conditions were evaluated: a glutamine control (FB-01), Ala-Gln alone (FB-02), Ala-Gln with TCA intermediates (FB-03), and the complete integrated strategy (FB-04). FB-04 delivered an > 83% reduction in peak lactate (4.0 mM) and 80% reduction in ammonia (< 2.0 mM), sustained cell viability above 85% through day 11, and achieved a 93% higher mAb titre (1.72 g/L) with peak Viable count density (VCD) of 39 × 10⁶ cells/mL. Glycosylation profiles (19.0% galactosylation) remained aligned with innovator benchmarks. This study presents the first direct head-to-head benchmarking of Ala-Gln substitution, TCA intermediate supplementation, and galactose co-feeding in a single CHO fed-batch platform, demonstrating their combined metabolic and glycosylation benefits against a glutamine control.
- 22 June 2026
- Published by Royal Society of Chemistry (RSC) in Analytical Methods
- Vol. 18 (31) , 6629-6645
Application of FT-IR spectroscopy as a non-invasive multi-attribute monitoring platform for critical quality attributes in monoclonal antibodies
FT-IR spectroscopy coupled with PCA enables rapid assessment of multiple monoclonal antibody critical quality attributes using a simple, low-complexity analytical workflow.
- 22 June 2026
- Published by Royal Society of Chemistry (RSC) in Analytical Methods
- Vol. 18 (31) , 6629-6645
Application of FT-IR spectroscopy as a non-invasive multi-attribute monitoring platform for critical quality attributes in monoclonal antibodies
FT-IR spectroscopy coupled with PCA enables rapid assessment of multiple monoclonal antibody critical quality attributes using a simple, low-complexity analytical workflow.
- 7 May 2026
- Published by Elsevier in International Journal of Pharmaceutics
- Vol. 698, 126950
Ionic liquids as synergistic stabilizers in biopharmaceuticals: controlling protein aggregation in formulation and processing
- 7 May 2026
- Published by Elsevier in International Journal of Pharmaceutics
- Vol. 698, 126950
Ionic liquids as synergistic stabilizers in biopharmaceuticals: controlling protein aggregation in formulation and processing
- 2 May 2026
- Published by Springer Nature in Molecular Biotechnology
- Vol. 68 (9) , 1-16
A CHO-Derived Matrix Attachment Region Enhances Transgene Dosage, SATB1 Recruitment, and Monoclonal Antibody Expression in a Dual-Promoter Vector System
The production of monoclonal antibodies (mAbs) in Chinese hamster ovary (CHO) cells is often affected by position-effect variegation and the gradual loss of transgene expression over time. Hence, we have designed a dual-promoter IgG expression vector and compared versions that either contained or lacked a CHO-derived matrix-attachment region (MAR). Stable CHO-S pools, cultured in serum-free conditions, revealed that the MAR-containing construct produced higher and more consistent antibody levels across ten passages, as confirmed by Western blot and Protein A Octet analysis. Product-quality analysis by size-exclusion chromatography and reducing SDS-PAGE confirmed formation of properly assembled, mainly monomeric antibodies in both cases. Quantitative PCR indicated greater transgene copy numbers in MAR pools (+ 48% for the light chain and + 71% for the heavy chain), and RT-qPCR showed roughly fourfold higher transcript levels for both chains relative to controls. Bioinformatic analysis revealed several SATB1 binding motifs within the MAR sequence, and ChIP-qPCR demonstrated SATB1 association with the MAR-linked transgene locus. Overall, the data suggested that a CHO-native MAR could enhance transgene dosage and transcriptional activity, while preserving product integrity, possibly through SATB1-mediated chromatin organization. Ongoing work includes chromatin-mark profiling and process-level productivity measurements to better define the impact of MAR-based vector design on biomanufacturing performance.
- 2 May 2026
- Published by Springer Nature in Molecular Biotechnology
- Vol. 68 (9) , 1-16
A CHO-Derived Matrix Attachment Region Enhances Transgene Dosage, SATB1 Recruitment, and Monoclonal Antibody Expression in a Dual-Promoter Vector System
The production of monoclonal antibodies (mAbs) in Chinese hamster ovary (CHO) cells is often affected by position-effect variegation and the gradual loss of transgene expression over time. Hence, we have designed a dual-promoter IgG expression vector and compared versions that either contained or lacked a CHO-derived matrix-attachment region (MAR). Stable CHO-S pools, cultured in serum-free conditions, revealed that the MAR-containing construct produced higher and more consistent antibody levels across ten passages, as confirmed by Western blot and Protein A Octet analysis. Product-quality analysis by size-exclusion chromatography and reducing SDS-PAGE confirmed formation of properly assembled, mainly monomeric antibodies in both cases. Quantitative PCR indicated greater transgene copy numbers in MAR pools (+ 48% for the light chain and + 71% for the heavy chain), and RT-qPCR showed roughly fourfold higher transcript levels for both chains relative to controls. Bioinformatic analysis revealed several SATB1 binding motifs within the MAR sequence, and ChIP-qPCR demonstrated SATB1 association with the MAR-linked transgene locus. Overall, the data suggested that a CHO-native MAR could enhance transgene dosage and transcriptional activity, while preserving product integrity, possibly through SATB1-mediated chromatin organization. Ongoing work includes chromatin-mark profiling and process-level productivity measurements to better define the impact of MAR-based vector design on biomanufacturing performance.
- 17 March 2026
- Published by Elsevier in Biologicals
- Vol. 94, 101883
Antioxidant excipient–mediated stabilization preserves FcγRIIIa binding and ADCC activity of rituximab
- 17 March 2026
- Published by Elsevier in Biologicals
- Vol. 94, 101883
Antioxidant excipient–mediated stabilization preserves FcγRIIIa binding and ADCC activity of rituximab
- Open Access
- 6 December 2025
- Published by Springer Nature in International Journal of Peptide Research and Therapeutics
- Vol. 32 (1) , 4
Correction: Resisting Enzymatic Degradation: Synthesis, Characterization, and In-Vitro Bioassay of Vitamin-Conjugated Salmon Calcitonin Analogue
- 6 December 2025
- Published by Springer Nature in International Journal of Peptide Research and Therapeutics
- Vol. 32 (1) , 4
Open AccessCorrection: Resisting Enzymatic Degradation: Synthesis, Characterization, and In-Vitro Bioassay of Vitamin-Conjugated Salmon Calcitonin Analogue
- 5 December 2025
- Published by Springer Nature in Microfluidics and Nanofluidics
- Vol. 30 (1) , 6
In silico approach for validating organ-on-chips: exemplifying through a skin-on-chip device
- 5 December 2025
- Published by Springer Nature in Microfluidics and Nanofluidics
- Vol. 30 (1) , 6
In silico approach for validating organ-on-chips: exemplifying through a skin-on-chip device