Ping Shi
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Ping Shi has a total of 187 co-authors. Here are the top co-authors by number of shared publications:
Zhiwei Huang
College of Biological Science and Medical Engineering Donghua University Shanghai China
16 shared publications- Zhiwei Huang
Donghua University
14 shared publications Qiaoqiao Zheng
State Key Laboratory of Bioreactor Engineering East China University of Science and Technology Shanghai China
13 shared publicationsMing Li
State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, 200237, China
12 shared publicationsJian Wang
State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, P.R. China
10 shared publicationsJing Sun
Qinghai Key Laboratory of Qinghai‐Tibet Plateau Biological Resources Northwest Institute of Plateau Biology The Chinese Academy of Sciences Xining China
10 shared publications
Latest Publications
- Open Access
- 29 August 2026
- Published by Wiley in The FEBS Journal
The dual role of Rpt3 in protecting cells from proteotoxic damage
Disrupted protein homeostasis is a shared characteristic in ageing, obesity‐induced lipotoxicity and neurodegenerative diseases. The accumulation of misfolded or unfolded proteins within the cell triggers endoplasmic reticulum (ER) stress. In response, the unfolded protein response (UPR) and ER‐associated degradation (ERAD) pathways are activated. A key mechanism to alleviate intracellular protein aggregation involves ubiquitination of substrates and their subsequent degradation by the proteasome. The ubiquitin–proteasome system (UPS) is indispensable for cellular protein quality control, and its dysfunction contributes to various proteopathies. However, the crosstalk between the proteasome subunit Rpt3 and the Ire1‐Hac1 pathway appears to be rarely reported. In Saccharomyces cerevisiae , growth curve and spotting assay demonstrated that overexpression of Rpt3 reduced the sensitivity of ire1 Δ or hac1 Δ to ER stressors. The growth‐promoting effect of Rpt3 is not a common feature of the BASE subunits, as overexpression of Rpt6 failed to rescue the growth inhibition. Deletion of hac1 resulted in stoichiometric imbalance among proteasomal subunits, which may be key for Rpt3‐mediated rescue of hac1 Δ growth, as deletion of the proteasome transcriptional factor Rpn4 impedes Rpt3 from restoring the growth of hac1 Δ from ER stress. Overexpression of Rpt3 enhanced proteasome assembly and activity, reducing intracellular ubiquitin levels in hac1 Δ. Moreover, Rpt3 increased the protein level of Hac1, and its alleviation of proteotoxic stress was dependent on the collaboration of ubiquitinating enzymes and chaperones. Western blot and proteasome activity assay in human cells confirmed the cross‐species conservation of Rpt3 function. These results highlight a dual role for Rpt3 in proteostasis: beyond enhancing proteasomal activity, Rpt3 upregulates Hac1 protein abundance, thereby ensuring proteostasis maintenance.
- 29 August 2026
- Published by Wiley in The FEBS Journal
Open AccessThe dual role of Rpt3 in protecting cells from proteotoxic damage
Disrupted protein homeostasis is a shared characteristic in ageing, obesity‐induced lipotoxicity and neurodegenerative diseases. The accumulation of misfolded or unfolded proteins within the cell triggers endoplasmic reticulum (ER) stress. In response, the unfolded protein response (UPR) and ER‐associated degradation (ERAD) pathways are activated. A key mechanism to alleviate intracellular protein aggregation involves ubiquitination of substrates and their subsequent degradation by the proteasome. The ubiquitin–proteasome system (UPS) is indispensable for cellular protein quality control, and its dysfunction contributes to various proteopathies. However, the crosstalk between the proteasome subunit Rpt3 and the Ire1‐Hac1 pathway appears to be rarely reported. In Saccharomyces cerevisiae , growth curve and spotting assay demonstrated that overexpression of Rpt3 reduced the sensitivity of ire1 Δ or hac1 Δ to ER stressors. The growth‐promoting effect of Rpt3 is not a common feature of the BASE subunits, as overexpression of Rpt6 failed to rescue the growth inhibition. Deletion of hac1 resulted in stoichiometric imbalance among proteasomal subunits, which may be key for Rpt3‐mediated rescue of hac1 Δ growth, as deletion of the proteasome transcriptional factor Rpn4 impedes Rpt3 from restoring the growth of hac1 Δ from ER stress. Overexpression of Rpt3 enhanced proteasome assembly and activity, reducing intracellular ubiquitin levels in hac1 Δ. Moreover, Rpt3 increased the protein level of Hac1, and its alleviation of proteotoxic stress was dependent on the collaboration of ubiquitinating enzymes and chaperones. Western blot and proteasome activity assay in human cells confirmed the cross‐species conservation of Rpt3 function. These results highlight a dual role for Rpt3 in proteostasis: beyond enhancing proteasomal activity, Rpt3 upregulates Hac1 protein abundance, thereby ensuring proteostasis maintenance.
- Open Access
- 17 June 2026
- Published by Elsevier in Redox Biology
- Vol. 95, 104258
Clioquinol inactivates thiamine pyrophosphate by increasing cellular oxidative stress
- 17 June 2026
- Published by Elsevier in Redox Biology
- Vol. 95, 104258
Open AccessClioquinol inactivates thiamine pyrophosphate by increasing cellular oxidative stress
- Open Access
- 1 June 2026
- Published by Royal Society of Chemistry (RSC) in Chemical Science
- Vol. 17 (28) , 13884-13898
Hydroxyl-radical-specific cascade photogeneration for oxygen-chain photocatalytic therapy
This work presents a LQM core that, for the first time, allows in situ ˙OH-specific photogeneration from H 2 O. This breakthrough in O 2 -independent photocatalytic therapy is enabled via a “H 2 O–O 2 –˙OH” oxygen-chain cascade pathway.
- 1 June 2026
- Published by Royal Society of Chemistry (RSC) in Chemical Science
- Vol. 17 (28) , 13884-13898
Open AccessHydroxyl-radical-specific cascade photogeneration for oxygen-chain photocatalytic therapy
This work presents a LQM core that, for the first time, allows in situ ˙OH-specific photogeneration from H 2 O. This breakthrough in O 2 -independent photocatalytic therapy is enabled via a “H 2 O–O 2 –˙OH” oxygen-chain cascade pathway.
- 16 February 2026
- Published by Elsevier in Molecular and Cellular Neuroscience
- Vol. 136, 104074
4-MEC potentially triggers CAV1 via the BDNF-TrkB signaling pathway
- 16 February 2026
- Published by Elsevier in Molecular and Cellular Neuroscience
- Vol. 136, 104074
4-MEC potentially triggers CAV1 via the BDNF-TrkB signaling pathway
- 14 January 2026
- Published by American Chemical Society (ACS) in ACS Applied Bio Materials
- Vol. 9 (3) , 1352-1364
PEGylated Graphene Oxide as a Nanocarrier Assists Alpha Lipoic Acid Mitigating Hypoxia Induced Mitochondrial Dysfunction
Due to its hydrophilicity and biocompatibility, PEGylated graphene oxide (GO-PEG) has been reported as a potential nanocarrier for anticancer therapeutic agents. Alpha lipoic acid (α-LA), a cofactor in multienzyme complexes, plays a central role in mitochondrial energy metabolism. In this study, we first observed that GO-PEG could rapidly enter rat cardiomyocyte H9C2 cells and colocalize with mitochondria by confocal laser microscopy using Rhodamine B (RhB) as a probe. Next, α-LA was loaded onto GO-PEG-RhB through π-π stacking and hydrophobic interactions, forming a GO-PEG-RhB/α-LA complex with a 21.4% loading rate and 42.8% encapsulation efficiency. In vitro assays showed that GO-PEG-RhB/α-LA significantly mitigated mitochondrial dysfunction compared with free α-LA in a hypoxia-induced H9C2 cell model treated with CoCl2 via the regulation of mitochondrial dynamics and biogenesis signaling pathways. GO-PEG-RhB/α-LA clearly showed better mitochondrial targeting and α-LA release in mitochondria than free α-LA. After oral administration in a hypoxia-induced mouse model, GO-PEG-RhB/α-LA again showed a better recovery effect on hypoxia-induced mitochondrial dysfunction than free α-LA. Taken together, our data demonstrate the feasibility of GO-PEG as a nanocarrier for mitochondrial-targeted drugs. This work broadens the application of graphene-based nanocarriers in biomedical fields.
- 14 January 2026
- Published by American Chemical Society (ACS) in ACS Applied Bio Materials
- Vol. 9 (3) , 1352-1364
PEGylated Graphene Oxide as a Nanocarrier Assists Alpha Lipoic Acid Mitigating Hypoxia Induced Mitochondrial Dysfunction
Due to its hydrophilicity and biocompatibility, PEGylated graphene oxide (GO-PEG) has been reported as a potential nanocarrier for anticancer therapeutic agents. Alpha lipoic acid (α-LA), a cofactor in multienzyme complexes, plays a central role in mitochondrial energy metabolism. In this study, we first observed that GO-PEG could rapidly enter rat cardiomyocyte H9C2 cells and colocalize with mitochondria by confocal laser microscopy using Rhodamine B (RhB) as a probe. Next, α-LA was loaded onto GO-PEG-RhB through π-π stacking and hydrophobic interactions, forming a GO-PEG-RhB/α-LA complex with a 21.4% loading rate and 42.8% encapsulation efficiency. In vitro assays showed that GO-PEG-RhB/α-LA significantly mitigated mitochondrial dysfunction compared with free α-LA in a hypoxia-induced H9C2 cell model treated with CoCl2 via the regulation of mitochondrial dynamics and biogenesis signaling pathways. GO-PEG-RhB/α-LA clearly showed better mitochondrial targeting and α-LA release in mitochondria than free α-LA. After oral administration in a hypoxia-induced mouse model, GO-PEG-RhB/α-LA again showed a better recovery effect on hypoxia-induced mitochondrial dysfunction than free α-LA. Taken together, our data demonstrate the feasibility of GO-PEG as a nanocarrier for mitochondrial-targeted drugs. This work broadens the application of graphene-based nanocarriers in biomedical fields.
- Open Access
- 24 July 2025
- Published by Open Exploration Publishing in Exploration of Drug Science
- Vol. 3, 1008121
Study on bioactivities of Morinda citrifolia L. fruit hydroalcoholic extracts and detection of novel phytoconstituents by UPLC-Q-exactive orbitrap-tandem mass spectrum analysis
Aim: The objective of this study is to ascertain the antimicrobial and anticancer properties of dry Morinda citrifolia L. (noni) pulp hydroalcoholic extracts. Methods: In this study, dry noni samples were immersed in hydro-alcoholic solvents, ethanol (EtOH) and methanol (MeOH). Using the intelligent-flash extractor (KBE-I5) and freeze-vacuum dryer, noni ethanol (NE) and noni methanol (NM) extracts were obtained for antimicrobial testing against bacterial and fungal strains via disc diffusion assay. Cell viability was assessed using the cell counting kit-8 (CCK-8) assay, acridine orange (AO) staining, and western blotting to evaluate anticancer effects on human cancer cells. Novel phytoconstituents were identified using dual-mode ultra-performance liquid chromatography quadrupole exactive orbitrap-tandem mass spectrometer (UPLC-Q-exactive orbitrap-MS/MS) analysis. Results: Extraction yielded 16.8% for NE and 25.8% for NM. NE minimum inhibitory concentrations (MICs) against Escherichia coli (EC), Saccharomyces cerevisiae (SC), Staphylococcus aureus (SA), and Streptococcus thermophilus (ST) being 177, 52, 388, and 283 mg/mL. NM MICs values were 105, 47, 312, and 135 mg/mL, respectively. Anticancer half inhibitory concentrations (IC50s) for NE against human colon adenocarcinoma cell (HT-29) and human bladder cancer cell lines (UMUC-3) were 758 and 899 µg/mL. For NM, IC50s were 1,231 (HT-29) and 1,173 (UMUC-3) µg/mL. Cell death indicators include organelle deformities, AO fluorescence, and autophagy protein expression. In dual ion-scan mode UPLC analysis, 17 distinct phytoconstituents were identified, including 2-Hydroxycinnamic acid, 4-Hydroxycinnamic acid, and riboflavin, known for treating cancer, metabolic dysfunctions, and COVID-19. The 14 constituents were discovered in noni fruit for the first time. Conclusions: Noni fruit extracts show antimicrobial/anticancer activity and therapeutic potential, establishing noni fruit as a promising food and medicinal source based on composition.
- 24 July 2025
- Published by Open Exploration Publishing in Exploration of Drug Science
- Vol. 3, 1008121
Open AccessStudy on bioactivities of Morinda citrifolia L. fruit hydroalcoholic extracts and detection of novel phytoconstituents by UPLC-Q-exactive orbitrap-tandem mass spectrum analysis
Aim: The objective of this study is to ascertain the antimicrobial and anticancer properties of dry Morinda citrifolia L. (noni) pulp hydroalcoholic extracts. Methods: In this study, dry noni samples were immersed in hydro-alcoholic solvents, ethanol (EtOH) and methanol (MeOH). Using the intelligent-flash extractor (KBE-I5) and freeze-vacuum dryer, noni ethanol (NE) and noni methanol (NM) extracts were obtained for antimicrobial testing against bacterial and fungal strains via disc diffusion assay. Cell viability was assessed using the cell counting kit-8 (CCK-8) assay, acridine orange (AO) staining, and western blotting to evaluate anticancer effects on human cancer cells. Novel phytoconstituents were identified using dual-mode ultra-performance liquid chromatography quadrupole exactive orbitrap-tandem mass spectrometer (UPLC-Q-exactive orbitrap-MS/MS) analysis. Results: Extraction yielded 16.8% for NE and 25.8% for NM. NE minimum inhibitory concentrations (MICs) against Escherichia coli (EC), Saccharomyces cerevisiae (SC), Staphylococcus aureus (SA), and Streptococcus thermophilus (ST) being 177, 52, 388, and 283 mg/mL. NM MICs values were 105, 47, 312, and 135 mg/mL, respectively. Anticancer half inhibitory concentrations (IC50s) for NE against human colon adenocarcinoma cell (HT-29) and human bladder cancer cell lines (UMUC-3) were 758 and 899 µg/mL. For NM, IC50s were 1,231 (HT-29) and 1,173 (UMUC-3) µg/mL. Cell death indicators include organelle deformities, AO fluorescence, and autophagy protein expression. In dual ion-scan mode UPLC analysis, 17 distinct phytoconstituents were identified, including 2-Hydroxycinnamic acid, 4-Hydroxycinnamic acid, and riboflavin, known for treating cancer, metabolic dysfunctions, and COVID-19. The 14 constituents were discovered in noni fruit for the first time. Conclusions: Noni fruit extracts show antimicrobial/anticancer activity and therapeutic potential, establishing noni fruit as a promising food and medicinal source based on composition.
- 26 November 2024
- Published by Elsevier in Journal of Pharmaceutical and Biomedical Analysis
- Vol. 255, 116566
Identification and pharmacological properties of 2-(1H-indazole-3-carboxamido)-3,3-dimethylbutanoate (MDMB-INACA), N-(1-amino-3,3-dimethyl-1-oxobutan-2-yl)-1H-indazole-3-carboxamide (ADB-INACA), and N-(1-amino-3,3-dimethyl-1-oxobutan-2-yl)-1-hexyl-1H-indazole-3-carboxamide (ADB-HINACA)
- 26 November 2024
- Published by Elsevier in Journal of Pharmaceutical and Biomedical Analysis
- Vol. 255, 116566
Identification and pharmacological properties of 2-(1H-indazole-3-carboxamido)-3,3-dimethylbutanoate (MDMB-INACA), N-(1-amino-3,3-dimethyl-1-oxobutan-2-yl)-1H-indazole-3-carboxamide (ADB-INACA), and N-(1-amino-3,3-dimethyl-1-oxobutan-2-yl)-1-hexyl-1H-indazole-3-carboxamide (ADB-HINACA)
- 7 September 2024
- Published by Elsevier in Research in Microbiology
- Vol. 175 (8) , 104245
BSC2 modulates AmB resistance via the maintenance of intracellular sodium/potassium ion homeostasis in Saccharomyces cerevisiae
- 7 September 2024
- Published by Elsevier in Research in Microbiology
- Vol. 175 (8) , 104245
BSC2 modulates AmB resistance via the maintenance of intracellular sodium/potassium ion homeostasis in Saccharomyces cerevisiae
- 11 June 2024
- Published by Wiley in Biotechnology Journal
- Vol. 19 (6) , e2300662
Clioquinol rescues yeast cells from Aβ42 toxicity via the inhibition of oxidative damage
Alzheimer's disease (AD), the most common form of dementia, has gotten considerable attention. Previous studies have demonstrated that clioquinol (CQ) as a metal chelator is a potential drug for the treatment of AD. However, the mode of action of CQ in AD is still unclear. In our study, the antioxidant effects of CQ on yeast cells expressing Aβ42 were investigated. We found that CQ could reduce Aβ42 toxicity by alleviating reactive oxygen species (ROS) generation and lipid peroxidation level in yeast cells. These alterations were mainly attributable to the increased reduced glutathione (GSH) content and independent of activities of superoxide dismutase (SOD) and/or catalase (CAT). CQ could affect antioxidant enzyme activity by altering the transcription level of related genes. Interestingly, it was noted for the first time that CQ could combine with antioxidant enzymes to reduce their enzymatic activities by molecular docking and circular dichroism spectroscopy. In addition, CQ restored Aβ42‐mediated disruption of GSH homeostasis via regulating YAP1 expression to protect cells against oxidative stress. Our findings not only improve the current understanding of the mechanism of CQ as a potential drug for AD treatment but also provide ideas for subsequent drug research and development.
- 11 June 2024
- Published by Wiley in Biotechnology Journal
- Vol. 19 (6) , e2300662
Clioquinol rescues yeast cells from Aβ42 toxicity via the inhibition of oxidative damage
Alzheimer's disease (AD), the most common form of dementia, has gotten considerable attention. Previous studies have demonstrated that clioquinol (CQ) as a metal chelator is a potential drug for the treatment of AD. However, the mode of action of CQ in AD is still unclear. In our study, the antioxidant effects of CQ on yeast cells expressing Aβ42 were investigated. We found that CQ could reduce Aβ42 toxicity by alleviating reactive oxygen species (ROS) generation and lipid peroxidation level in yeast cells. These alterations were mainly attributable to the increased reduced glutathione (GSH) content and independent of activities of superoxide dismutase (SOD) and/or catalase (CAT). CQ could affect antioxidant enzyme activity by altering the transcription level of related genes. Interestingly, it was noted for the first time that CQ could combine with antioxidant enzymes to reduce their enzymatic activities by molecular docking and circular dichroism spectroscopy. In addition, CQ restored Aβ42‐mediated disruption of GSH homeostasis via regulating YAP1 expression to protect cells against oxidative stress. Our findings not only improve the current understanding of the mechanism of CQ as a potential drug for AD treatment but also provide ideas for subsequent drug research and development.
- 1 June 2024
- Published by Elsevier in Gene Reports
- Vol. 36
A four-gene model for prognostic prediction in bladder urothelial carcinoma
- 1 June 2024
- Published by Elsevier in Gene Reports
- Vol. 36
A four-gene model for prognostic prediction in bladder urothelial carcinoma